SNP Profiles of UF 667 View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	GG	AT	AC	GT	CT	AC	CG	AG	CT	AT	GG	AG	CC	CT
1._GC-01-029-2-06	GG	AT	AC	GT	CT	AC	CG	AG	CT	AT	GG	AG	CC	CT
2._UF_667	GG	AT	AC	GT	CT	AC	CG	AG	CT	AT	GG	AG	CC	CT
3._UF_667	GG	AT	AC	GT	CT	AC	CG	AG	CT	AT	GG	AG	CC	CT
4._UF_667	GG	AT	AC	GT	CT	AC	CG	AG	CT	AT	GG	AG	CC	CT
5._GC-01-029-2-06	GG	AT	AC	GT	CT	AC	CG	AG	CT	AT	GG	AG	CC	CT
6._GC-01-029-2-06	GG	AT	AC	GT	CT	AC	CG	AG	CT	AT	GG	AG	CC	CT
7._GC-01-029-2-06	GG	AT	AC	GT	CT	AC	CG	AG	CT	AT	GG	AG	CC	CT
8._UF_667	GG	AT	AC	GT	CT	AC	CG	AG	CT	AT	GG	AG	CC	CT
9._GC-01-029-2-06	GG	AT	AC	GT	CT	AC	CG	AG	CT	AT	GG	AG	CC	CT
10._UF_667	GG	AT	AC	GT	CT	AC	__	AG	CT	AT	GG	AG	CC	CT
11._UF_667	GG	AT	AC	GT	CT	AC	CG	AG	CT	AT	GG	AG	CC	CT
12._GC-01-029-2-06	GG	AT	AC	GT	CT	AC	CG	AG	CT	AT	GG	AG	CC	CT
13._GC-01-029-2-06	GG	AT	AC	GT	CT	AC	__	AG	CT	AT	GG	AG	CC	CT
14._UF_667	GG	AT	AC	GT	CT	AC	CG	AG	CT	AT	GG	AG	CC	CT
15._RUQ_55	GG	AT	AC	GT	CT	AC	CG	AG	CT	AT	GG	AG	CC	CT
16._UF_667	GG	AT	AC	GT	CT	AC	CG	AG	CT	AT	GG	AG	CC	CT
17._RUQ_55	__	__	AC	GT	CT	AC	CG	AG	CT	AT	__	AG	CC	CT
18._UF_667	GG	AT	AC	GT	CT	AC	GG	AG	CT	AT	GG	AG	CC	CT
19._RUQ_55	__	__	AC	__	__	__	__	AG	__	__	__	__	AC	__
20._UF_667	GG	AT	AC	GT	CT	AA	CC	AG	CC	AA	GG	AG	AA	CC
21._GC-01-29-2-6	GG	AT	AC	AC	AG	AC	CG	AG	AG	AT	GG	__	CC	__
22._RUQ_55	GG	AT	AC	AC	AG	AC	CG	AG	AG	AT	GG	__	CC	__
23._UF_667_Fld#_119_Plt#_1	GG	AT	CC	AC	AA	AA	GG	AA	AG	AT	GG	__	AC	__

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	GT	CC	AC	CT	GG	GT	CG	CC	TT	GG	AA	CT	AG	CT
1._GC-01-029-2-06	GT	CC	AC	CT	GG	GT	CG	CC	TT	GG	AA	CT	AG	CT
2._UF_667	GT	CC	AC	CT	GG	GT	CG	CC	TT	GG	AA	CT	AG	CT
3._UF_667	GT	CC	AC	CT	GG	GT	CG	CC	TT	GG	AA	CT	AG	CT
4._UF_667	GT	CC	AC	CT	GG	GT	CG	CC	TT	GG	AA	CT	AG	CT
5._GC-01-029-2-06	GT	CC	AC	CT	GG	GT	CG	CC	TT	GG	AA	CT	AG	CT
6._GC-01-029-2-06	GT	CC	AC	CT	GG	GT	CG	CC	TT	GG	AA	CT	AG	CT
7._GC-01-029-2-06	GT	CC	AC	CT	GG	GT	CG	CC	TT	GG	AA	CT	AG	CT
8._UF_667	GT	CC	AC	CT	GG	GT	CG	CC	TT	GG	AA	CT	AG	__
9._GC-01-029-2-06	GT	CC	AC	CT	GG	GT	CG	CC	TT	GG	AA	CT	AG	__
10._UF_667	GT	CC	AC	CT	GG	GT	CG	CC	TT	GG	AA	CT	AG	CT
11._UF_667	GT	CC	AC	CT	GG	GT	CG	CC	TT	GG	AA	CT	AG	__
12._GC-01-029-2-06	GT	CC	AC	CT	GG	GT	CG	CC	TT	GG	AA	CT	AG	__
13._GC-01-029-2-06	GT	CC	AC	CT	GG	GT	CG	CC	TT	GG	AA	CT	AG	CT
14._UF_667	GT	CC	AC	CT	AG	GT	CG	CC	TT	GG	AA	CT	AG	CT
15._RUQ_55	GT	CC	AC	CT	AG	GT	CG	CC	TT	GG	AA	CT	AG	CT
16._UF_667	GT	CC	AC	CT	AG	GT	CG	CC	TT	GG	AA	CT	AG	CT
17._RUQ_55	GT	CC	AA	CT	__	GT	CG	CC	__	__	__	__	AG	CT
18._UF_667	GT	CC	AC	CT	AG	GT	CG	CC	TT	GG	AA	CT	AG	CT
19._RUQ_55	__	CC	AC	__	AG	GT	CG	__	__	__	__	__	AG	__
20._UF_667	GG	CG	CC	TT	AA	GG	GG	CC	CT	CG	AA	CC	AG	CC
21._GC-01-29-2-6	AC	CC	AC	AG	__	AC	CG	GG	AA	GG	AA	AG	AG	AG
22._RUQ_55	AC	CC	AC	AG	__	AC	CG	GG	AA	GG	AA	AG	AG	AG
23._UF_667_Fld#_119_Plt#_1	AC	CG	AC	AA	__	CC	GG	AG	AG	GG	AT	AA	AA	GG

	29	30	31	32	33	34	35	36	37	38	39	40
_Input profile	AA	AA	CT	CT	GT	CC	AA	TT	CT	CG	AG	CT	X_X	X_X
1._GC-01-029-2-06	AA	AA	CT	CT	GT	CC	AA	TT	CT	CG	AG	CT	X_X	X_X
2._UF_667	AA	AA	CT	CT	GT	CC	AA	TT	CT	CG	AG	CT	X_X	X_X
3._UF_667	AA	AA	CT	CT	GT	CC	AA	TT	CT	CG	AG	CT	X_X	X_X
4._UF_667	AA	AA	CT	CT	GT	CC	AA	TT	CT	CG	AG	CT	X_X	X_X
5._GC-01-029-2-06	AA	AA	CT	CT	GT	CC	AA	TT	CT	CG	AG	CT	X_X	X_X
6._GC-01-029-2-06	AA	AA	CT	CT	GT	CC	AA	TT	CT	CG	AG	CT	X_X	X_X
7._GC-01-029-2-06	AA	AA	CT	CT	GT	CC	AA	TT	CT	CG	AG	CT	X_X	X_X
8._UF_667	AA	AA	CT	CT	GT	CC	AA	TT	CT	CG	AG	CT	X_X	X_X
9._GC-01-029-2-06	AA	AA	CT	CT	GT	CC	AA	TT	CT	CG	AG	CT	X_X	X_X
10._UF_667	AA	AA	CT	CT	GT	CC	AA	TT	CT	CG	AG	CT	X_X	X_X
11._UF_667	AA	AA	CT	CT	GT	CC	AA	TT	CT	CG	AG	CT	X_X	X_X
12._GC-01-029-2-06	AA	AA	CT	CT	GT	CC	AA	TT	CT	CG	AG	CT	X_X	X_X
13._GC-01-029-2-06	AA	AA	CT	CT	GT	CC	AA	TT	CT	CG	AG	CT	X_X	X_X
14._UF_667	AA	AA	CT	CT	GT	CC	AA	TT	CT	CG	AG	CT	X_X	X_X
15._RUQ_55	AA	AA	CT	CT	GT	CC	AA	TT	CT	CG	AG	CT	X_X	X_X
16._UF_667	AA	AA	CT	CT	GT	CC	AA	TT	CT	CG	AG	CT	X_X	X_X
17._RUQ_55	__	__	__	__	GT	__	__	__	CT	CG	AG	__	X_X	X_X
18._UF_667	AA	AA	CT	CT	GT	CC	AA	TT	CT	CG	AG	CT	X_X	X_X
19._RUQ_55	AA	__	CT	__	GT	__	__	__	__	CG	__	__	X_X	X_X
20._UF_667	GG	AA	CC	CC	TT	TT	CC	TT	CT	CG	GG	CC	X_X	X_X
21._GC-01-29-2-6	AA	AA	__	__	AA	GG	AA	AA	AG	CG	AG	AG	X_X	X_X
22._RUQ_55	AA	AA	__	__	AA	GG	AA	AA	AG	CG	AG	AG	X_X	X_X
23._UF_667_Fld#_119_Plt#_1	AG	AA	__	__	AA	AG	AC	AG	AG	CC	AG	GG	X_X	X_X

Input profile: UF_667

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Mars Center for Cocoa Science, Brazil

Location: 1206 3

Dapeng Zhang, 2016

1._UF_667 GC-01-029-2-06

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

2._UF_667

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1206 5 > FP

Dapeng Zhang, 2016

3._UF_667

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1206 1 > FP

Dapeng Zhang, 2016

4._UF_667

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1206 10

Dapeng Zhang, 2016

5._UF_667 GC-01-029-2-06

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

6._UF_667 GC-01-029-2-06

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5 > FP2

7._UF_667 GC-01-029-2-06

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 10

Notes: 10

8._UF_667

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1206 2

Dapeng Zhang, 2016

9._UF_667 GC-01-029-2-06

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

10._UF_667

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1206 11 > F

Dapeng Zhang, 2016

11._UF_667

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1206 7

Dapeng Zhang, 2016

12._UF_667 GC-01-029-2-06

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 7

Notes: 7

13._UF_667 GC-01-029-2-06

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 11

Notes: 11 > FP4

14._UF_667

98.8 %
40 shared markers

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica

Location: Cabiria

Dapeng Zhang, 2016

15._UF_667 RUQ_55

98.8 %
40 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

16._UF_667

98.8 %
40 shared markers

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Malaysian Cocoa Board (MCB), Malaysia

Location: C0244

Dapeng Zhang, 2016

17._UF_667 RUQ_55

97.9 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

18._UF_667

97.5 %
40 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 6B F466 T2

Dapeng Zhang, 2016

19._UF_667 RUQ_55

92.3 %
13 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

Population Assignment:

Ame
0.525 Cri
0.469

20._UF_667

62.5 %
40 shared markers

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Indonesian Coffee and Cocoa Research Institute (ICCRI), Indonesia

Location: KW 292 I-042

Dapeng Zhang, 2016

21._UF_667 GC-01-29-2-6

57.1 %
35 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Field: 1, Block: 2, Rep: 6, Tree: 1 > FP1

Notes: Brazil_Selections_Poss_grandparent

22._UF_667 RUQ_55

57.1 %
35 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

23._UF_667 UF_667_Fld#_119_Plt#_1

40 %
35 shared markers

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USDA-TARS, United States of America

Location: Field: 119, Tree: 1

Key to SNP Markers

Key to SNP Markers

1	TcSNP25	2	TcSNP32	3	TcSNP144	4	TcSNP150	5	TcSNP151
6	TcSNP193	7	TcSNP226	8	TcSNP230	9	TcSNP242	10	TcSNP372
11	TcSNP429	12	TcSNP469	13	TcSNP529	14	TcSNP534	15	TcSNP560
16	TcSNP577	17	TcSNP591	18	TcSNP619	19	TcSNP645	20	TcSNP723
21	TcSNP872	22	TcSNP891	23	TcSNP917	24	TcSNP929	25	TcSNP953
26	TcSNP994	27	TcSNP998	28	TcSNP1060	29	TcSNP1062	30	TcSNP1075
31	TcSNP1144	32	TcSNP1165	33	TcSNP1253	34	TcSNP1270	35	TcSNP1350
36	TcSNP1414	37	TcSNP1442	38	TcSNP1458	39	TcSNP1484	40	TcSNP1520