SNP Profiles of UF 29   View Data

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 Key

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_Input profile
CGATCCGTCTACCCAACCATAGAGACCT
1._UF_29
CGATCCGTCTACCCAACCATAGAGACCT
2._GC-01-020-1-20
CGATCCGTCTACCCAACCATAGAGACCT
3._GC-01-020-1-20
CGATCCGTCTACCCAACCATAGAGACCT
4._GC-01-020-1-20
CGATCCGTCTACCCAACCATAGAGACCT
5._GC-01-020-1-20
CGATCCGTCTACCCAACCATAGAGACCT
6._GC-01-020-1-20
CGATCCGTCTACCCAACCATAGAGACCT
7._GC-01-020-1-20
CGATCCGTCTACCCAACCATAGAGACCT
8._GC-01-020-1-20
CGATCCGTCTACCCAACCATAGAGACCT
9._GC-01-020-1-20
CGATCCGTCTACCCAACCATAGAGACCT
10._GC-01-020-1-20
CGATCCGTCTACCCAACCATAGAGACCT
11._GC-01-020-1-20
CGATCCGTCTACCCAACCATAGAGACCT
12._UF_29
CGATCCGTCTACCCAACCATAGAGACCT
13._UF_29
CGATCCGTCTACCCAACCATAGAGACCT
14._UF_29
CGATCCGTCTACCCAACCATAGAGACCT
15._UF_29
CGATCCGTCTACCCAACCATAGAGACCT
16._UF_29
CGATCCGTCTACCCAACCATAGAGACCT
17._UF_29
CGATCCGTCTACCCAACCATAGAGACCT
18._UF_29
CGATCCGTCTACCCAACCATAGAGACCT
19._UF_29
CGATCCGTCTACCCAACCATAGAGACCT
20._GC-01-020-1-20
CGATCCGTCTACCCAACCAT__AGACCT
21._GC-01-020-1-20
CGATCCGTCTACCCAACCAT__AGACCT
22._GC-01-020-1-20
CGATCCGTCTACCCAACCATAGAGACCT
23._UF_29
CGATCCGTCTACCCAACCAT__AGACCT
24._UF_29
CGATCCGTCTACCCAACCAT__AGACCT
25._UF_29
CGATCCGTCTACCCAACCATAGAGACCT
26._UF_29
CGATCCGTCTACCCAACCATAGAGACCT
27._UF_29
CGATCCGTCTAC__AACCATAG__ACCT
28._UF_29
CGATCCGTCTAC__AACCATAAAGACCT
29._UF_29_Fld#_20_Plt#_5
CGATCCACAGACGGAAGGATAG__AC__
 1516171819202122232425262728
_Input profile
GTCGACCTAGGGGGCTCTGGATTTAGCC
1._UF_29
GTCGACCTAGGGGGCTCTGGATTTAGCC
2._GC-01-020-1-20
GTCGACCTAGGGGGCTCTGGATTTAGCC
3._GC-01-020-1-20
GTCGACCTAGGGGGCTCTGGATTTAGCC
4._GC-01-020-1-20
GTCGACCTAGGGGGCTCTGGATTTAGCC
5._GC-01-020-1-20
GTCGACCTAGGGGGCTCTGGATTTAGCC
6._GC-01-020-1-20
GTCGACCTAGGGGGCTCTGGATTTAGCC
7._GC-01-020-1-20
GTCGACCTAGGGGGCTCTGGATTTAGCC
8._GC-01-020-1-20
GTCGACCTAGGGGGCTCTGGATTTAGCC
9._GC-01-020-1-20
GTCGACCTAGGGGGCTCTGGATTTAGCC
10._GC-01-020-1-20
GTCGACCTAGGGGGCTCTGGATTTAGCC
11._GC-01-020-1-20
GTCGACCTAGGGGGCTCTGGATTTAGCC
12._UF_29
GTCGACCTAGGGGGCTCTGGATTTAGCC
13._UF_29
GTCGACCTAGGGGGCTCTGGATTTAGCC
14._UF_29
GTCGACCTAGGGGGCTCTGGATTTAGCC
15._UF_29
GTCGACCTAGGGGGCTCTGGATTTAGCC
16._UF_29
GTCGACCTAGGGGGCTCTGGATTTAGCC
17._UF_29
GTCGACCTAGGGGGCTCTGGATTTAGCC
18._UF_29
GTCGACCTAGGGGGCTCTGGATTTAGCC
19._UF_29
GTCGACCTAGGGGGCTCTGGATTTAGCC
20._GC-01-020-1-20
GTCGACCTAGGGGGCTCTGGATTTAGCC
21._GC-01-020-1-20
GTCGACCTAGGGGGCTCTGGATTTAGCC
22._GC-01-020-1-20
GTCGACCTAGGGGGCTCTGGATTTAGCC
23._UF_29
GTCGACCTAGGGGGCTCTGGATTTAGCC
24._UF_29
GTCGACCTAGGGGGCTCTGGATTTAGCC
25._UF_29
GTCGACCTAGGGGGCTCTGGATTTAGCC
26._UF_29
GTCGACCTAAGGGGCTCTGGATTTAGCC
27._UF_29
__CGACCTAAGGGGCTCTGG__TT____
28._UF_29
GTCGACCTAAGGGGCTCTGGATTTAGCC
29._UF_29_Fld#_20_Plt#_5
ACCGACAG__CCCCAGAGGGATAAAGGG
 293031323334353637383940  
_Input profile
AGATCTCCGTCTAACTCTCGAGCTX_XX_X
1._UF_29
AGATCTCCGTCTAACTCTCGAGCTX_XX_X
2._GC-01-020-1-20
AGATCTCCGTCTAACTCTCGAGCTX_XX_X
3._GC-01-020-1-20
AGATCTCCGTCTAACTCTCGAGCTX_XX_X
4._GC-01-020-1-20
AGATCTCCGTCTAACTCTCGAGCTX_XX_X
5._GC-01-020-1-20
AGATCTCCGTCTAACTCTCGAGCTX_XX_X
6._GC-01-020-1-20
AGATCTCCGTCTAACTCTCGAGCTX_XX_X
7._GC-01-020-1-20
AGATCTCCGTCTAACTCTCGAGCTX_XX_X
8._GC-01-020-1-20
AGATCTCCGTCTAACTCTCGAGCTX_XX_X
9._GC-01-020-1-20
AGATCTCCGTCTAACTCTCGAGCTX_XX_X
10._GC-01-020-1-20
AGATCTCCGTCTAACTCTCGAGCTX_XX_X
11._GC-01-020-1-20
AGATCTCCGTCTAACTCTCGAGCTX_XX_X
12._UF_29
AGATCTCCGTCTAACTCTCGAGCTX_XX_X
13._UF_29
AGATCTCCGTCTAACTCTCGAGCTX_XX_X
14._UF_29
AGATCTCCGTCTAACTCTCGAGCTX_XX_X
15._UF_29
AGATCTCCGTCTAACTCTCGAGCTX_XX_X
16._UF_29
AGATCTCCGTCTAACTCTCGAGCTX_XX_X
17._UF_29
AGATCTCCGTCTAACTCTCGAGCTX_XX_X
18._UF_29
AGATCTCCGTCTAACTCTCGAGCTX_XX_X
19._UF_29
AGATCTCCGTCTAACTCTCGAGCTX_XX_X
20._GC-01-020-1-20
AGATCTCCGTCTAACTCTCGAGCTX_XX_X
21._GC-01-020-1-20
AGATCTCCGTCTAACTCTCGAGCTX_XX_X
22._GC-01-020-1-20
AGATCTCCGT__AACTCTCGAGCTX_XX_X
23._UF_29
AGATCTCCGTCTAACTCTCGAGCTX_XX_X
24._UF_29
AGATCTCCGTCTAACTCTCGAGCTX_XX_X
25._UF_29
AGATCTCCGT__AACTCTCGAGCTX_XX_X
26._UF_29
AGATCTCCGTCTACCTCTCGAGCTX_XX_X
27._UF_29
AGAT__CCGTCTACCTCTCGAG__X_XX_X
28._UF_29
AGATCTCCGTCTACCTCTCGAGCTX_XX_X
29._UF_29_Fld#_20_Plt#_5
AGAT____ACAG__AGAGCGAGAGX_XX_X

Input profile: UF_29

 
Mars Center for Cocoa Science, Brazil
Location: 1115 14 > F
 Dapeng Zhang, 2016

1._UF_29

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1115 6 > FP
 Dapeng Zhang, 2016

2._UF_29 GC-01-020-1-20

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

3._UF_29 GC-01-020-1-20

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15
 Mars, 2018

4._UF_29 GC-01-020-1-20

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14 > FP3
 Mars, 2018

5._UF_29 GC-01-020-1-20

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

6._UF_29 GC-01-020-1-20

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

7._UF_29 GC-01-020-1-20

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

8._UF_29 GC-01-020-1-20

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

9._UF_29 GC-01-020-1-20

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6 > FP4
 Mars, 2018

10._UF_29 GC-01-020-1-20

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP2
 Mars, 2018

11._UF_29 GC-01-020-1-20

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

12._UF_29

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1115 4 > FP
 Dapeng Zhang, 2016

13._UF_29

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1115 16
 Dapeng Zhang, 2016

14._UF_29

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1115 15
 Dapeng Zhang, 2016

15._UF_29

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1115 13
 Dapeng Zhang, 2016

16._UF_29

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1115 10
 Dapeng Zhang, 2016

17._UF_29

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1115 8
 Dapeng Zhang, 2016

18._UF_29

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1115 7
 Dapeng Zhang, 2016

19._UF_29

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1115 3
 Dapeng Zhang, 2016

20._UF_29 GC-01-020-1-20

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

21._UF_29 GC-01-020-1-20

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9 > FP1
 Mars, 2018

22._UF_29 GC-01-020-1-20

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

23._UF_29

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1115 9 > FP
 Dapeng Zhang, 2016

24._UF_29

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1115 12
 Dapeng Zhang, 2016

25._UF_29

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1115 2
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

26._UF_29

97.5 %
40 shared markers

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

27._UF_29

96.9 %
32 shared markers

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

28._UF_29

96.2 %
39 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B F454 T8
 Dapeng Zhang, 2016

29._UF_29 UF_29_Fld#_20_Plt#_5

50 %
34 shared markers

USDA-TARS, United States of America
Location: Field: 20, Tree: 5
Notes: TARS_Cacao_collection
 Mars, 2018

 


  Key to SNP Markers

1TcSNP25 2TcSNP32 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP193 7TcSNP226 8TcSNP230 9TcSNP242 10TcSNP372
11TcSNP429 12TcSNP469 13TcSNP529 14TcSNP534 15TcSNP560
16TcSNP577 17TcSNP591 18TcSNP619 19TcSNP645 20TcSNP723
21TcSNP872 22TcSNP891 23TcSNP917 24TcSNP929 25TcSNP953
26TcSNP994 27TcSNP998 28TcSNP1060 29TcSNP1062 30TcSNP1075
31TcSNP1144 32TcSNP1165 33TcSNP1253 34TcSNP1270 35TcSNP1350
36TcSNP1414 37TcSNP1442 38TcSNP1458 39TcSNP1484 40TcSNP1520