SNP Profiles of UF 29   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
CGATCCGTCTACAACCATAGACCTCGAC
1._UF_29___
CGATCCGTCTACAACCATAGACCTCGAC
2._UF_29___
CGATCCGTCTACAACCATAAACCTCGAC
3._UF_29___
CGATCCGTCTACAACCATAGACCTCGAC
4._UF_29___
CGATCCGTCTACAACCATAGACCTCGAC
5._UF_29___
CGATCCGTCTACAACCATAGACCTCGAC
6._UF_29___
CGATCCGTCTACAACCATAGACCTCGAC
7._UF_29___
CGATCCGTCTACAACCATAGACCTCGAC
8._UF_29___
CGATCCGTCTACAACCATAGACCTCGAC
9._UF_29___
CGATCCGTCTACAACCATAGACCTCGAC
10._UF_29___
CGATCCGTCTACAACCATAGACCTCGAC
11._UF_29___
CGATCCGTCTACAACCATAGACCTCGAC
12._UF_29___
CGATCCGTCTACAACCATAGACCTCGAC
13._UF_29___
CGATCCGTCTACAACCATAGACCTCGAC
14._UF_29___
CGATCCGTCTACAACCATAGACCTCGAC
15._UF_29___
CGATCCGTCTACAACCATAGACCTCGAC
16._UF_29___
CGATCCGTCTACAACCATAGACCTCGAC
17._UF_29___
CGATCCGTCTACAACCATAGACCTCGAC
18._UF_29___
CGATCCGTCTACAACCATAGACCTCGAC
19._UF_29___
CGATCCGTCTACAACCATAGACCTCGAC
20._UF_29___
CGATCCGTCTACAACCATAGACCTCGAC
21._UF_29___
CGATCCGTCTACAACCATAGACCTCGAC
22._UF_29___
CGATCCGTCTACAACCATAGACCTCGAC
23._UF_29___
CGATCCGTCTACAACCAT__ACCTCGAC
24._UF_29___
CGATCCGTCTACAACCAT__ACCTCGAC
25._UF_29___
CGATCCGTCTACAACCATAGACCTCGAC
26._UF_29___
CGATCCGTCTACAACCAT__ACCTCGAC
27._UF_29___
CGATCCGTCTACAACCAT__ACCTCGAC
28._UF_29___
CGATCCGTCTACAACCATAGACCTCGAC
29._UF_29___
CGATCCACAGACAAGGATAGAC__CGAC
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
CTAAGGGGCTCTGGTTAGATCCGTCTAC
1._UF_29___
CTAAGGGGCTCTGGTTAGATCCGTCTAC
2._UF_29___
CTAAGGGGCTCTGGTTAGATCCGTCTAC
3._UF_29___
CTAGGGGGCTCTGGTTAGATCCGTCTAA
4._UF_29___
CTAGGGGGCTCTGGTTAGATCCGTCTAA
5._UF_29___
CTAGGGGGCTCTGGTTAGATCCGTCTAA
6._UF_29___
CTAGGGGGCTCTGGTTAGATCCGTCTAA
7._UF_29___
CTAGGGGGCTCTGGTTAGATCCGTCTAA
8._UF_29___
CTAGGGGGCTCTGGTTAGATCCGTCTAA
9._UF_29___
CTAGGGGGCTCTGGTTAGATCCGTCTAA
10._UF_29___
CTAGGGGGCTCTGGTTAGATCCGTCTAA
11._UF_29___
CTAGGGGGCTCTGGTTAGATCCGTCTAA
12._UF_29___
CTAGGGGGCTCTGGTTAGATCCGTCTAA
13._UF_29___
CTAGGGGGCTCTGGTTAGATCCGTCTAA
14._UF_29___
CTAGGGGGCTCTGGTTAGATCCGTCTAA
15._UF_29___
CTAGGGGGCTCTGGTTAGATCCGTCTAA
16._UF_29___
CTAGGGGGCTCTGGTTAGATCCGTCTAA
17._UF_29___
CTAGGGGGCTCTGGTTAGATCCGTCTAA
18._UF_29___
CTAGGGGGCTCTGGTTAGATCCGTCTAA
19._UF_29___
CTAGGGGGCTCTGGTTAGATCCGTCTAA
20._UF_29___
CTAGGGGGCTCTGGTTAGATCCGTCTAA
21._UF_29___
CTAGGGGGCTCTGGTTAGATCCGTCTAA
22._UF_29___
CTAGGGGGCTCTGGTTAGATCCGTCTAA
23._UF_29___
CTAGGGGGCTCTGGTTAGATCCGTCTAA
24._UF_29___
CTAGGGGGCTCTGGTTAGATCCGTCTAA
25._UF_29___
CTAGGGGGCTCTGGTTAGATCCGT__AA
26._UF_29___
CTAGGGGGCTCTGGTTAGATCCGTCTAA
27._UF_29___
CTAGGGGGCTCTGGTTAGATCCGTCTAA
28._UF_29___
CTAGGGGGCTCTGGTTAGATCCGT__AA
29._UF_29___
AG__CCCCAGAGGGAAAGAT__ACAG__
 29 30 31 32           
_Input profile
CTCTCGAGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
1._UF_29___
CTCTCGAGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
2._UF_29___
CTCTCGAGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
3._UF_29___
CTCTCGAGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
4._UF_29___
CTCTCGAGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
5._UF_29___
CTCTCGAGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
6._UF_29___
CTCTCGAGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
7._UF_29___
CTCTCGAGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
8._UF_29___
CTCTCGAGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
9._UF_29___
CTCTCGAGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
10._UF_29___
CTCTCGAGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
11._UF_29___
CTCTCGAGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
12._UF_29___
CTCTCGAGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
13._UF_29___
CTCTCGAGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
14._UF_29___
CTCTCGAGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
15._UF_29___
CTCTCGAGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
16._UF_29___
CTCTCGAGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
17._UF_29___
CTCTCGAGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
18._UF_29___
CTCTCGAGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
19._UF_29___
CTCTCGAGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
20._UF_29___
CTCTCGAGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
21._UF_29___
CTCTCGAGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
22._UF_29___
CTCTCGAGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
23._UF_29___
CTCTCGAGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
24._UF_29___
CTCTCGAGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
25._UF_29___
CTCTCGAGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
26._UF_29___
CTCTCGAGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
27._UF_29___
CTCTCGAGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
28._UF_29___
CTCTCGAGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
29._UF_29___
AGAGCGAGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X

Input profile: UF_29

 
Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

1._UF_29

identical
32 shared markers

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

2._UF_29

98.4 %
32 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B F454 T8
 Dapeng Zhang, 2016

3._UF_29

96.9 %
32 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1115 6 > FP
 Dapeng Zhang, 2016

4._UF_29 GC-01-020-1-20

96.9 %
32 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

5._UF_29 GC-01-020-1-20

96.9 %
32 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15
 Mars, 2018

6._UF_29 GC-01-020-1-20

96.9 %
32 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14 > FP3
 Mars, 2018

7._UF_29 GC-01-020-1-20

96.9 %
32 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

8._UF_29 GC-01-020-1-20

96.9 %
32 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

9._UF_29 GC-01-020-1-20

96.9 %
32 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

10._UF_29 GC-01-020-1-20

96.9 %
32 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

11._UF_29 GC-01-020-1-20

96.9 %
32 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6 > FP4
 Mars, 2018

12._UF_29 GC-01-020-1-20

96.9 %
32 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP2
 Mars, 2018

13._UF_29 GC-01-020-1-20

96.9 %
32 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

14._UF_29

96.9 %
32 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1115 4 > FP
 Dapeng Zhang, 2016

15._UF_29

96.9 %
32 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1115 14 > F
 Dapeng Zhang, 2016

16._UF_29

96.9 %
32 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1115 16
 Dapeng Zhang, 2016

17._UF_29

96.9 %
32 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1115 15
 Dapeng Zhang, 2016

18._UF_29

96.9 %
32 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1115 13
 Dapeng Zhang, 2016

19._UF_29

96.9 %
32 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1115 10
 Dapeng Zhang, 2016

20._UF_29

96.9 %
32 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1115 8
 Dapeng Zhang, 2016

21._UF_29

96.9 %
32 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1115 7
 Dapeng Zhang, 2016

22._UF_29

96.9 %
32 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1115 3
 Dapeng Zhang, 2016

23._UF_29 GC-01-020-1-20

96.8 %
31 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

24._UF_29 GC-01-020-1-20

96.8 %
31 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9 > FP1
 Mars, 2018

25._UF_29 GC-01-020-1-20

96.8 %
31 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

26._UF_29

96.8 %
31 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1115 9 > FP
 Dapeng Zhang, 2016

27._UF_29

96.8 %
31 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1115 12
 Dapeng Zhang, 2016

28._UF_29

96.8 %
31 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1115 2
 Dapeng Zhang, 2016

29._UF_29 UF_29_Fld#_20_Plt#_5

53.6 %
28 shared markers

USDA-TARS, United States of America
Location: Field: 20, Tree: 5
Notes: TARS_Cacao_collection
 Mars, 2018

 


  Key to SNP Markers

1TcSNP25 2TcSNP32 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP193 7TcSNP230 8TcSNP242 9TcSNP372 10TcSNP429
11TcSNP529 12TcSNP534 13TcSNP577 14TcSNP591 15TcSNP619
16TcSNP645 17TcSNP723 18TcSNP872 19TcSNP891 20TcSNP917
21TcSNP929 22TcSNP994 23TcSNP1062 24TcSNP1075 25TcSNP1165
26TcSNP1253 27TcSNP1270 28TcSNP1350 29TcSNP1414 30TcSNP1442
31TcSNP1458 32TcSNP1484