SNP Profiles of UF 29   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
CGATCCGTCTACAACCATAAAGACCTGT
1._UF_29
CGATCCGTCTACAACCATAGAGACCTGT
2._UF_29
CGATCCGTCTACAACCATAG__ACCT__
3._GC-01-020-1-20
CGATCCGTCTACAACCAT__AGACCTGT
4._GC-01-020-1-20
CGATCCGTCTACAACCAT__AGACCTGT
5._UF_29
CGATCCGTCTACAACCAT__AGACCTGT
6._UF_29
CGATCCGTCTACAACCAT__AGACCTGT
7._UF_29
CGATCCGTCTACAACCATAGAGACCTGT
8._GC-01-020-1-20
CGATCCGTCTACAACCATAGAGACCTGT
9._GC-01-020-1-20
CGATCCGTCTACAACCATAGAGACCTGT
10._GC-01-020-1-20
CGATCCGTCTACAACCATAGAGACCTGT
11._GC-01-020-1-20
CGATCCGTCTACAACCATAGAGACCTGT
12._GC-01-020-1-20
CGATCCGTCTACAACCATAGAGACCTGT
13._GC-01-020-1-20
CGATCCGTCTACAACCATAGAGACCTGT
14._GC-01-020-1-20
CGATCCGTCTACAACCATAGAGACCTGT
15._GC-01-020-1-20
CGATCCGTCTACAACCATAGAGACCTGT
16._GC-01-020-1-20
CGATCCGTCTACAACCATAGAGACCTGT
17._GC-01-020-1-20
CGATCCGTCTACAACCATAGAGACCTGT
18._UF_29
CGATCCGTCTACAACCATAGAGACCTGT
19._UF_29
CGATCCGTCTACAACCATAGAGACCTGT
20._UF_29
CGATCCGTCTACAACCATAGAGACCTGT
21._UF_29
CGATCCGTCTACAACCATAGAGACCTGT
22._UF_29
CGATCCGTCTACAACCATAGAGACCTGT
23._UF_29
CGATCCGTCTACAACCATAGAGACCTGT
24._UF_29
CGATCCGTCTACAACCATAGAGACCTGT
25._UF_29
CGATCCGTCTACAACCATAGAGACCTGT
26._UF_29
CGATCCGTCTACAACCATAGAGACCTGT
27._GC-01-020-1-20
CGATCCGTCTACAACCATAGAGACCTGT
28._UF_29
CGATCCGTCTACAACCATAGAGACCTGT
29._UF_29_Fld#_20_Plt#_5
CGATCCACAGACAAGGATAG__AC__AC
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
CGACCTAAGGGGCTCTGGATTTAGCCAG
1._UF_29
CGACCTAAGGGGCTCTGGATTTAGCCAG
2._UF_29
CGACCTAAGGGGCTCTGG__TT____AG
3._GC-01-020-1-20
CGACCTAGGGGGCTCTGGATTTAGCCAG
4._GC-01-020-1-20
CGACCTAGGGGGCTCTGGATTTAGCCAG
5._UF_29
CGACCTAGGGGGCTCTGGATTTAGCCAG
6._UF_29
CGACCTAGGGGGCTCTGGATTTAGCCAG
7._UF_29
CGACCTAGGGGGCTCTGGATTTAGCCAG
8._GC-01-020-1-20
CGACCTAGGGGGCTCTGGATTTAGCCAG
9._GC-01-020-1-20
CGACCTAGGGGGCTCTGGATTTAGCCAG
10._GC-01-020-1-20
CGACCTAGGGGGCTCTGGATTTAGCCAG
11._GC-01-020-1-20
CGACCTAGGGGGCTCTGGATTTAGCCAG
12._GC-01-020-1-20
CGACCTAGGGGGCTCTGGATTTAGCCAG
13._GC-01-020-1-20
CGACCTAGGGGGCTCTGGATTTAGCCAG
14._GC-01-020-1-20
CGACCTAGGGGGCTCTGGATTTAGCCAG
15._GC-01-020-1-20
CGACCTAGGGGGCTCTGGATTTAGCCAG
16._GC-01-020-1-20
CGACCTAGGGGGCTCTGGATTTAGCCAG
17._GC-01-020-1-20
CGACCTAGGGGGCTCTGGATTTAGCCAG
18._UF_29
CGACCTAGGGGGCTCTGGATTTAGCCAG
19._UF_29
CGACCTAGGGGGCTCTGGATTTAGCCAG
20._UF_29
CGACCTAGGGGGCTCTGGATTTAGCCAG
21._UF_29
CGACCTAGGGGGCTCTGGATTTAGCCAG
22._UF_29
CGACCTAGGGGGCTCTGGATTTAGCCAG
23._UF_29
CGACCTAGGGGGCTCTGGATTTAGCCAG
24._UF_29
CGACCTAGGGGGCTCTGGATTTAGCCAG
25._UF_29
CGACCTAGGGGGCTCTGGATTTAGCCAG
26._UF_29
CGACCTAGGGGGCTCTGGATTTAGCCAG
27._GC-01-020-1-20
CGACCTAGGGGGCTCTGGATTTAGCCAG
28._UF_29
CGACCTAGGGGGCTCTGGATTTAGCCAG
29._UF_29_Fld#_20_Plt#_5
CGACAG__CCCCAGAGGGATAAAGGGAG
 29 30 31 32 33 34 35 36 37 38 39    
_Input profile
ATCTCCGTCTACCTCTCGAGCTX_XX_XX_X
1._UF_29
ATCTCCGTCTACCTCTCGAGCTX_XX_XX_X
2._UF_29
AT__CCGTCTACCTCTCGAG__X_XX_XX_X
3._GC-01-020-1-20
ATCTCCGTCTAACTCTCGAGCTX_XX_XX_X
4._GC-01-020-1-20
ATCTCCGTCTAACTCTCGAGCTX_XX_XX_X
5._UF_29
ATCTCCGTCTAACTCTCGAGCTX_XX_XX_X
6._UF_29
ATCTCCGTCTAACTCTCGAGCTX_XX_XX_X
7._UF_29
ATCTCCGTCTAACTCTCGAGCTX_XX_XX_X
8._GC-01-020-1-20
ATCTCCGTCTAACTCTCGAGCTX_XX_XX_X
9._GC-01-020-1-20
ATCTCCGTCTAACTCTCGAGCTX_XX_XX_X
10._GC-01-020-1-20
ATCTCCGTCTAACTCTCGAGCTX_XX_XX_X
11._GC-01-020-1-20
ATCTCCGTCTAACTCTCGAGCTX_XX_XX_X
12._GC-01-020-1-20
ATCTCCGTCTAACTCTCGAGCTX_XX_XX_X
13._GC-01-020-1-20
ATCTCCGTCTAACTCTCGAGCTX_XX_XX_X
14._GC-01-020-1-20
ATCTCCGTCTAACTCTCGAGCTX_XX_XX_X
15._GC-01-020-1-20
ATCTCCGTCTAACTCTCGAGCTX_XX_XX_X
16._GC-01-020-1-20
ATCTCCGTCTAACTCTCGAGCTX_XX_XX_X
17._GC-01-020-1-20
ATCTCCGTCTAACTCTCGAGCTX_XX_XX_X
18._UF_29
ATCTCCGTCTAACTCTCGAGCTX_XX_XX_X
19._UF_29
ATCTCCGTCTAACTCTCGAGCTX_XX_XX_X
20._UF_29
ATCTCCGTCTAACTCTCGAGCTX_XX_XX_X
21._UF_29
ATCTCCGTCTAACTCTCGAGCTX_XX_XX_X
22._UF_29
ATCTCCGTCTAACTCTCGAGCTX_XX_XX_X
23._UF_29
ATCTCCGTCTAACTCTCGAGCTX_XX_XX_X
24._UF_29
ATCTCCGTCTAACTCTCGAGCTX_XX_XX_X
25._UF_29
ATCTCCGTCTAACTCTCGAGCTX_XX_XX_X
26._UF_29
ATCTCCGTCTAACTCTCGAGCTX_XX_XX_X
27._GC-01-020-1-20
ATCTCCGT__AACTCTCGAGCTX_XX_XX_X
28._UF_29
ATCTCCGT__AACTCTCGAGCTX_XX_XX_X
29._UF_29_Fld#_20_Plt#_5
AT____ACAG__AGAGCGAGAGX_XX_XX_X

Input profile: UF_29

 
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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B F454 T8
 Dapeng Zhang, 2016

1._UF_29

98.7 %
39 shared markers

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

2._UF_29

98.4 %
32 shared markers

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

3._UF_29 GC-01-020-1-20

97.4 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

4._UF_29 GC-01-020-1-20

97.4 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9 > FP1
 Mars, 2018

5._UF_29

97.4 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1115 9 > FP
 Dapeng Zhang, 2016

6._UF_29

97.4 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1115 12
 Dapeng Zhang, 2016

7._UF_29

96.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1115 6 > FP
 Dapeng Zhang, 2016

8._UF_29 GC-01-020-1-20

96.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

9._UF_29 GC-01-020-1-20

96.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15
 Mars, 2018

10._UF_29 GC-01-020-1-20

96.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14 > FP3
 Mars, 2018

11._UF_29 GC-01-020-1-20

96.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

12._UF_29 GC-01-020-1-20

96.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

13._UF_29 GC-01-020-1-20

96.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

14._UF_29 GC-01-020-1-20

96.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

15._UF_29 GC-01-020-1-20

96.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6 > FP4
 Mars, 2018

16._UF_29 GC-01-020-1-20

96.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP2
 Mars, 2018

17._UF_29 GC-01-020-1-20

96.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

18._UF_29

96.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1115 4 > FP
 Dapeng Zhang, 2016

19._UF_29

96.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1115 14 > F
 Dapeng Zhang, 2016

20._UF_29

96.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1115 16
 Dapeng Zhang, 2016

21._UF_29

96.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1115 15
 Dapeng Zhang, 2016

22._UF_29

96.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1115 13
 Dapeng Zhang, 2016

23._UF_29

96.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1115 10
 Dapeng Zhang, 2016

24._UF_29

96.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1115 8
 Dapeng Zhang, 2016

25._UF_29

96.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1115 7
 Dapeng Zhang, 2016

26._UF_29

96.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1115 3
 Dapeng Zhang, 2016

27._UF_29 GC-01-020-1-20

96.1 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

28._UF_29

96.1 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1115 2
 Dapeng Zhang, 2016

29._UF_29 UF_29_Fld#_20_Plt#_5

50 %
33 shared markers

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USDA-TARS, United States of America
Location: Field: 20, Tree: 5
Notes: TARS_Cacao_collection
 Mars, 2018

 

  Key to SNP Markers

1TcSNP25 2TcSNP32 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP193 7TcSNP230 8TcSNP242 9TcSNP372 10TcSNP429
11TcSNP469 12TcSNP529 13TcSNP534 14TcSNP560 15TcSNP577
16TcSNP591 17TcSNP619 18TcSNP645 19TcSNP723 20TcSNP872
21TcSNP891 22TcSNP917 23TcSNP929 24TcSNP953 25TcSNP994
26TcSNP998 27TcSNP1060 28TcSNP1062 29TcSNP1075 30TcSNP1144
31TcSNP1165 32TcSNP1253 33TcSNP1270 34TcSNP1350 35TcSNP1414
36TcSNP1442 37TcSNP1458 38TcSNP1484 39TcSNP1520