SNP Profiles of SPA 9 [COL]   View Data

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 Key

 1234567891011121314
_Input profile
GGTTACGGCTACCGAACTAAGGAACCTT
1._RUQ_235
____CC__TT__CC__CT____AGAC__
2._RUQ_235
____AC________AG________AC__
3._SPA_9_[COL]
CGATACGTCTACCCAGCTAAGGAGACCT
4._GC-01-099-5-16
CGATACGTCTACCCAGCTAAGGAGACCT
5._GC-01-099-5-16
CGATACGTCTACCCAGCTAAGGAGACCT
6._GC-01-099-5-16
CGATACGTCTACCCAGCTAAGGAGACCT
7._GC-01-099-5-16
CGATACGTCTACCCAGCTAAGGAGACCT
8._GC-01-099-5-16
CGATACGTCTACCCAGCTAAGGAGACCT
9._SPA_9_[COL]
CGATACGTCTACCCAGCTAAGGAGACCT
10._SPA_9_[COL]
CGATACGTCTACCCAGCTAAGGAGACCT
11._SPA_9_[COL]
CGATACGTCTACCCAGCTAAGGAGACCT
12._SPA_9_[COL]
CGATACGTCTACCCAGCTAAGGAGACCT
13._SPA_9_[COL]
CGATACGTCTACCCAGCTAAGGAGACCT
14._GC-01-099-5-16
CGATACGTCTACCCAGCTAAGGAGACCT
15._GC-01-099-5-16
CGATACGT__ACCCAGCTAAGGAGACCT
16._SPA_9_[COL]
CGATACGT__ACCCAGCTAAGGAGACCT
17._SPA_9_[COL]
CGATACGT__ACCCAGCTAAGGAGACCT
18._GC-01-099-5-16
CGATACGT__ACCCAGCTAAGGAGACCT
19._RUQ_235
CGATACGTCTACCCAGCTAAGGAGACCT
20._RUQ_235
CGAT__ACAGACGGAGAGAAGG__AC__
 1516171819202122232425262728
_Input profile
GGGGAACCAAGGCGCCCCGGAATTAGCC
1._RUQ_235
GTCG__TT__GGCG__________AA__
2._RUQ_235
__CGCC__AAGGCG__________AA__
3._SPA_9_[COL]
GTCGCCTTAAGGCGCTCTCGATCTAACT
4._GC-01-099-5-16
GTCGCCTTAAGGCGCTCTCGATCTAACT
5._GC-01-099-5-16
GTCGCCTTAAGGCGCTCTCGATCTAACT
6._GC-01-099-5-16
GTCGCCTTAAGGCGCTCTCGATCTAACT
7._GC-01-099-5-16
GTCGCCTTAAGGCGCTCTCGATCTAACT
8._GC-01-099-5-16
GTCGCCTTAAGGCGCTCTCGATCTAACT
9._SPA_9_[COL]
GTCGCCTTAAGGCGCTCTCGATCTAACT
10._SPA_9_[COL]
GTCGCCTTAAGGCGCTCTCGATCTAACT
11._SPA_9_[COL]
GTCGCCTTAAGGCGCTCTCGATCTAACT
12._SPA_9_[COL]
GTCGCCTTAAGGCGCTCTCGATCTAACT
13._SPA_9_[COL]
GTCGCCTTAAGGCGCTCTCGATCTAACT
14._GC-01-099-5-16
GTCGCCTTAAGGCGCTCTCGATCTAACT
15._GC-01-099-5-16
GTCGCCTTAAGGCGCTCTCGATCTAACT
16._SPA_9_[COL]
GTCGCCTTAAGGCGCTCTCGATCTAACT
17._SPA_9_[COL]
GTCGCCTTAAGGCGCTCTCGATCTAACT
18._GC-01-099-5-16
GTCGCCTTAAGGCGCTCTCGATCTAACT
19._RUQ_235
GTCGCCTTAAGGCGCTCTCGATCTAACT
20._RUQ_235
ACCGCCAA__CCCGAGAGCGATAGAAAG
 293031323334353637383940  
_Input profile
GGAACCCCGTTTACTTTTCGAACCX_XX_X
1._RUQ_235
________GT______TTCCAA__X_XX_X
2._RUQ_235
AG__CT__GT________CC____X_XX_X
3._SPA_9_[COL]
AGAACTCTGTCTACCTTTCCAACTX_XX_X
4._GC-01-099-5-16
AGAACTCTGTCTACCTTTCCAACTX_XX_X
5._GC-01-099-5-16
AGAACTCTGTCTACCTTTCCAACTX_XX_X
6._GC-01-099-5-16
AGAACTCTGTCTACCTTTCCAACTX_XX_X
7._GC-01-099-5-16
AGAACTCTGTCTACCTTTCCAACTX_XX_X
8._GC-01-099-5-16
AGAACTCTGTCTACCTTTCCAACTX_XX_X
9._SPA_9_[COL]
AGAACTCTGTCTACCTTTCCAACTX_XX_X
10._SPA_9_[COL]
AGAACTCTGTCTACCTTTCCAACTX_XX_X
11._SPA_9_[COL]
AGAACTCTGTCTACCTTTCCAACTX_XX_X
12._SPA_9_[COL]
AGAACTCTGTCTACCTTTCCAACTX_XX_X
13._SPA_9_[COL]
AGAACTCTGTCTACCTTTCCAACTX_XX_X
14._GC-01-099-5-16
AGAACTCTGTCTACCTTTCCAACTX_XX_X
15._GC-01-099-5-16
AGAACTCTGTCTACCTTTCCAACTX_XX_X
16._SPA_9_[COL]
AGAACTCTGTCTACCTTTCCAACTX_XX_X
17._SPA_9_[COL]
AGAACTCTGTCTACCTTTCCAACTX_XX_X
18._GC-01-099-5-16
AGAACTCTGTCTACCTTTCCAACTX_XX_X
19._RUQ_235
AGAACTCTGTCTACCTTTCCAGCTX_XX_X
20._RUQ_235
AGAA____ACAGACAGAAGGAAAGX_XX_X

Input profile: SPA_9_[COL]

 
International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: CAMPUS 2 X1 Y17
 Dapeng Zhang, 2016

1._SPA_9_[COL] RUQ_235

65.6 %
16 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

2._SPA_9_[COL] RUQ_235

65.4 %
13 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

3._SPA_9_[COL]

65 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1516 14 > F
 Dapeng Zhang, 2016

4._SPA_9_[COL] GC-01-099-5-16

65 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6 > FP4
 Mars, 2018

5._SPA_9_[COL] GC-01-099-5-16

65 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

6._SPA_9_[COL] GC-01-099-5-16

65 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

7._SPA_9_[COL] GC-01-099-5-16

65 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

8._SPA_9_[COL] GC-01-099-5-16

65 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

9._SPA_9_[COL]

65 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1516 6 > FP
 Dapeng Zhang, 2016

10._SPA_9_[COL]

65 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1516 1 > FP
 Dapeng Zhang, 2016

11._SPA_9_[COL]

65 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1516 5
 Dapeng Zhang, 2016

12._SPA_9_[COL]

65 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1516 3
 Dapeng Zhang, 2016

13._SPA_9_[COL]

65 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1516 2
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

14._SPA_9_[COL] GC-01-099-5-16

65 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14 > FP3
 Mars, 2018

15._SPA_9_[COL] GC-01-099-5-16

64.1 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

16._SPA_9_[COL]

64.1 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1516 9 > FP
 Dapeng Zhang, 2016

17._SPA_9_[COL]

64.1 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1516 4
 Dapeng Zhang, 2016

18._SPA_9_[COL] GC-01-099-5-16

64.1 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9 > FP2
 Mars, 2018

19._SPA_9_[COL] RUQ_235

63.8 %
40 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

20._SPA_9_[COL] RUQ_235

36.8 %
34 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 


  Key to SNP Markers

1TcSNP25 2TcSNP32 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP193 7TcSNP226 8TcSNP230 9TcSNP242 10TcSNP372
11TcSNP429 12TcSNP469 13TcSNP529 14TcSNP534 15TcSNP560
16TcSNP577 17TcSNP591 18TcSNP619 19TcSNP645 20TcSNP723
21TcSNP872 22TcSNP891 23TcSNP917 24TcSNP929 25TcSNP953
26TcSNP994 27TcSNP998 28TcSNP1060 29TcSNP1062 30TcSNP1075
31TcSNP1144 32TcSNP1165 33TcSNP1253 34TcSNP1270 35TcSNP1350
36TcSNP1414 37TcSNP1442 38TcSNP1458 39TcSNP1484 40TcSNP1520