SNP Profiles of EET 272 [ECU]   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
CCAACCTTTTAATTTTCCCCAAGGCTAG
1._POUND_7_/B___
CCAACCTTTTAATTTTCCCCAAGGCTAG
2._POUND_7_/B___
CCAACCTTTTAATTTTCCCCAAGGCTAG
3._POUND_7_/B___
CCAACCTTTTAATTTTCCCCAAGGCTAG
4._POUND_7_/B___
CCAACCTTTTAATTTTCCCCAAGGCTAG
5._POUND_7_/B___
CCAACCTTTTAATTTTCCCCAAGGCTAG
6._POUND_7_/B___
CCAACCTTTTAATTTTCCCCAAGGCTAG
7._POUND_7_/B___
CCAACCTTTTAATTTTCCCCAAGGCTAG
8._POUND_7_/B___
CCAACCTTTTAATTTTCCCCAAGGCTAG
9._POUND_7_/B___
CCAACCTTTTAATTTTCCCCAAGGCTAG
10._POUND_7_/B___
CCAACCTTTTAATTTTCCCCAAGGCTAG
11._POUND_7_/B___
CCAACCTTTTAATTTTCCCCAAGGCTAG
12._POUND_7_/B___
CCAACCTTTTAATTTTCCCCAAGGCTAG
13._POUND_7_/B___
CCAACCTTTTAATTTTCCCCAAGGCTAG
14._POUND_7_/B___
CCAACCTTTTAATTTTCCCCAAGGCTAG
15._POUND_7_/B___
CCAACCTTTTAATTTTCCCCAAGGCTAG
16._POUND_7_/B___
CCAACCTTTTAATTTTCCCCAAGGCTAG
17._POUND_7_/B___
__AACCTT______TT________CTAG
18._POUND_7_/B___
____CC________TT__CC__GG__AG
19._POUND_7_/B___
____CC________TT__CC__GG__AG
20._POUND_7_/B___
CCAGCCTTTTAATTTTCCCCAAGGCTAG
21._POUND_7_/B___
GGAAGGAAAAAAAAAA____AAGGAGAG
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
CTAAGGCTCTCCGGAACTAAGGGTCTCC
1._POUND_7_/B___
CTAAGGCTCTCCGGAACTAAGGGTCTCC
2._POUND_7_/B___
CTAAGGCTCTCCGGAACTAAGGGTCTCC
3._POUND_7_/B___
CTAAGGCTCTCCGGAACTAAGGGTCTCC
4._POUND_7_/B___
CTAAGGCTCTCCGGAACTAAGGGTCTCC
5._POUND_7_/B___
CTAAGGCTCTCCGGAACTAAGGGTCTCC
6._POUND_7_/B___
CTAAGGCTCTCCGGAACTAAGGGTCTCC
7._POUND_7_/B___
CTAAGGCTCTCCGGAACTAAGGGTCTCC
8._POUND_7_/B___
CTAAGGCTCTCCGGAACTAAGGGTCTCC
9._POUND_7_/B___
CTAAGGCTCTCCGGAACTAAGGGTCTCC
10._POUND_7_/B___
CTAAGGCTCTCCGGAACTAAGGGTCTCC
11._POUND_7_/B___
CTAAGGCTCTCCGGAACTAAGGGTCTCC
12._POUND_7_/B___
CTAAGGCTCTCCGGAACTAAGGGTCTCC
13._POUND_7_/B___
CTAAGGCTCTCCGGAACTAAGGGTCTCC
14._POUND_7_/B___
CTAAGGCTCTCCGGAACTAAGGGTCTCC
15._POUND_7_/B___
CTAAGGCTCTCCGGAACTAAGGGTCTCC
16._POUND_7_/B___
CTAAGGCTCTCCGGAACTAAGGGTCTCC
17._POUND_7_/B___
__________CCGG__CTAAGGGTCTCC
18._POUND_7_/B___
__________CCGGAA__AAGG______
19._POUND_7_/B___
__________CCGGAA__AAGG______
20._POUND_7_/B___
CTAAGGCTCTCCGGAACTAAGGGTCTCC
21._POUND_7_/B___
AGAAGGAGAGGGCC__AGAAGGAC__CC
 29 30 31 32 33 34 35 36 37 38 39 40   
_Input profile
AAGGAACTAACCAACTGGACTTGGX_XX_X
1._POUND_7_/B___
AAGGAACTAACCAACTGGACTTGGX_XX_X
2._POUND_7_/B___
AAGGAACTAACCAACTGGACTTGGX_XX_X
3._POUND_7_/B___
AAGGAACTAACCAACTGGACTTGGX_XX_X
4._POUND_7_/B___
AAGGAACTAACCAACTGGACTTGGX_XX_X
5._POUND_7_/B___
AAGGAACTAACCAACTGGACTTGGX_XX_X
6._POUND_7_/B___
AAGGAACTAACCAACTGGACTTGGX_XX_X
7._POUND_7_/B___
AAGGAACTAACCAACTGGACTTGGX_XX_X
8._POUND_7_/B___
AAGGAACTAACCAACTGGACTTGGX_XX_X
9._POUND_7_/B___
AAGGAACTAACCAACTGGACTTGGX_XX_X
10._POUND_7_/B___
AAGGAACTAACCAACTGGACTTGGX_XX_X
11._POUND_7_/B___
AAGGAACTAACCAACTGGACTTGGX_XX_X
12._POUND_7_/B___
AAGGAACTAACCAACTGGACTTGGX_XX_X
13._POUND_7_/B___
AAGGAACTAACCAACTGGACTTGGX_XX_X
14._POUND_7_/B___
AAGGAACTAACCAACTGGACTTGGX_XX_X
15._POUND_7_/B___
AAGGAACTAACCAACTGGACTTGGX_XX_X
16._POUND_7_/B___
AAGGAACTAACCAACTGGACTTGGX_XX_X
17._POUND_7_/B___
AA__AACTAACCAACTGGAC____X_XX_X
18._POUND_7_/B___
________AA________AC____X_XX_X
19._POUND_7_/B___
________AA________AC____X_XX_X
20._POUND_7_/B___
AAGGAACTAACCAACTGGACTTGGX_XX_X
21._POUND_7_/B___
__GGAAAGAAGGAAAGCCACTTGGX_XX_X

Input profile: POUND_7_/B

 
Mars Center for Cocoa Science, Brazil
Location: 1611 10 > F
 Dapeng Zhang, 2016

1._POUND_7_/B

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1611 3
 Dapeng Zhang, 2016

2._POUND_7_/B GC-01-114-6-11

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

3._POUND_7_/B GC-01-114-6-11

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

4._POUND_7_/B GC-01-114-6-11

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

5._POUND_7_/B

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1611 4 > FP
 Dapeng Zhang, 2016

6._POUND_7_/B

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1611 11 > F
 Dapeng Zhang, 2016

7._POUND_7_/B

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1611 1 > FP
 Dapeng Zhang, 2016

8._POUND_7_/B

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1611 13
 Dapeng Zhang, 2016

9._POUND_7_/B

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1611 9
 Dapeng Zhang, 2016

10._POUND_7_/B

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1611 2
 Dapeng Zhang, 2016

11._POUND_7_/B GC-01-114-6-11

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP3
 Mars, 2018

12._POUND_7_/B GC-01-114-6-11

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

13._POUND_7_/B GC-01-114-6-11

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10 > FP2
 Mars, 2018

14._POUND_7_/B GC-01-114-6-11

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11 > FP4
 Mars, 2018

15._POUND_7_/B GC-01-114-6-11

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

16._POUND_7_/B

identical
40 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B F407 T3
 Dapeng Zhang, 2016

17._POUND_7_/B RUQ_24

identical
23 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

18._POUND_7_/B RUQ_24

identical
12 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

19._POUND_7_/B RUQ_24B

identical
12 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

20._POUND_7_/B RUQ_24

98.8 %
40 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

21._POUND_7_/B RUQ_24

48.6 %
35 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP998 15TcSNP994
16TcSNP953 17TcSNP929 18TcSNP917 19TcSNP891 20TcSNP872
21TcSNP723 22TcSNP645 23TcSNP619 24TcSNP591 25TcSNP577
26TcSNP560 27TcSNP534 28TcSNP529 29TcSNP469 30TcSNP429
31TcSNP372 32TcSNP242 33TcSNP230 34TcSNP226 35TcSNP193
36TcSNP151 37TcSNP150 38TcSNP144 39TcSNP32 40TcSNP25