SNP Profiles of POUND 7 /B   View Data

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 Key

 1234567891011121314
_Input profile
CCAACCTTTTAATTTTCCCCAAGGCTAG
1._POUND_7_/B
CCAACCTTTTAATTTTCCCCAAGGCTAG
2._GC-01-114-6-11
CCAACCTTTTAATTTTCCCCAAGGCTAG
3._GC-01-114-6-11
CCAACCTTTTAATTTTCCCCAAGGCTAG
4._GC-01-114-6-11
CCAACCTTTTAATTTTCCCCAAGGCTAG
5._POUND_7_/B
CCAACCTTTTAATTTTCCCCAAGGCTAG
6._POUND_7_/B
CCAACCTTTTAATTTTCCCCAAGGCTAG
7._POUND_7_/B
CCAACCTTTTAATTTTCCCCAAGGCTAG
8._POUND_7_/B
CCAACCTTTTAATTTTCCCCAAGGCTAG
9._POUND_7_/B
CCAACCTTTTAATTTTCCCCAAGGCTAG
10._POUND_7_/B
CCAACCTTTTAATTTTCCCCAAGGCTAG
11._GC-01-114-6-11
CCAACCTTTTAATTTTCCCCAAGGCTAG
12._GC-01-114-6-11
CCAACCTTTTAATTTTCCCCAAGGCTAG
13._GC-01-114-6-11
CCAACCTTTTAATTTTCCCCAAGGCTAG
14._GC-01-114-6-11
CCAACCTTTTAATTTTCCCCAAGGCTAG
15._GC-01-114-6-11
CCAACCTTTTAATTTTCCCCAAGGCTAG
16._POUND_7_/B
CCAACCTTTTAATTTTCCCCAAGGCTAG
17._RUQ_24
__AACCTT______TT________CTAG
18._RUQ_24
____CC________TT__CC__GG__AG
19._RUQ_24B
____CC________TT__CC__GG__AG
20._RUQ_24
CCAGCCTTTTAATTTTCCCCAAGGCTAG
21._RUQ_24
GGAAGGAAAAAAAAAA____AAGGAGAG
 1516171819202122232425262728
_Input profile
CTAAGGCTCTCCGGAACTAAGGGTCTCC
1._POUND_7_/B
CTAAGGCTCTCCGGAACTAAGGGTCTCC
2._GC-01-114-6-11
CTAAGGCTCTCCGGAACTAAGGGTCTCC
3._GC-01-114-6-11
CTAAGGCTCTCCGGAACTAAGGGTCTCC
4._GC-01-114-6-11
CTAAGGCTCTCCGGAACTAAGGGTCTCC
5._POUND_7_/B
CTAAGGCTCTCCGGAACTAAGGGTCTCC
6._POUND_7_/B
CTAAGGCTCTCCGGAACTAAGGGTCTCC
7._POUND_7_/B
CTAAGGCTCTCCGGAACTAAGGGTCTCC
8._POUND_7_/B
CTAAGGCTCTCCGGAACTAAGGGTCTCC
9._POUND_7_/B
CTAAGGCTCTCCGGAACTAAGGGTCTCC
10._POUND_7_/B
CTAAGGCTCTCCGGAACTAAGGGTCTCC
11._GC-01-114-6-11
CTAAGGCTCTCCGGAACTAAGGGTCTCC
12._GC-01-114-6-11
CTAAGGCTCTCCGGAACTAAGGGTCTCC
13._GC-01-114-6-11
CTAAGGCTCTCCGGAACTAAGGGTCTCC
14._GC-01-114-6-11
CTAAGGCTCTCCGGAACTAAGGGTCTCC
15._GC-01-114-6-11
CTAAGGCTCTCCGGAACTAAGGGTCTCC
16._POUND_7_/B
CTAAGGCTCTCCGGAACTAAGGGTCTCC
17._RUQ_24
__________CCGG__CTAAGGGTCTCC
18._RUQ_24
__________CCGGAA__AAGG______
19._RUQ_24B
__________CCGGAA__AAGG______
20._RUQ_24
CTAAGGCTCTCCGGAACTAAGGGTCTCC
21._RUQ_24
AGAAGGAGAGGGCC__AGAAGGAC__CC
 293031323334353637383940  
_Input profile
AAGGAACTAACCAACTGGACTTGGX_XX_X
1._POUND_7_/B
AAGGAACTAACCAACTGGACTTGGX_XX_X
2._GC-01-114-6-11
AAGGAACTAACCAACTGGACTTGGX_XX_X
3._GC-01-114-6-11
AAGGAACTAACCAACTGGACTTGGX_XX_X
4._GC-01-114-6-11
AAGGAACTAACCAACTGGACTTGGX_XX_X
5._POUND_7_/B
AAGGAACTAACCAACTGGACTTGGX_XX_X
6._POUND_7_/B
AAGGAACTAACCAACTGGACTTGGX_XX_X
7._POUND_7_/B
AAGGAACTAACCAACTGGACTTGGX_XX_X
8._POUND_7_/B
AAGGAACTAACCAACTGGACTTGGX_XX_X
9._POUND_7_/B
AAGGAACTAACCAACTGGACTTGGX_XX_X
10._POUND_7_/B
AAGGAACTAACCAACTGGACTTGGX_XX_X
11._GC-01-114-6-11
AAGGAACTAACCAACTGGACTTGGX_XX_X
12._GC-01-114-6-11
AAGGAACTAACCAACTGGACTTGGX_XX_X
13._GC-01-114-6-11
AAGGAACTAACCAACTGGACTTGGX_XX_X
14._GC-01-114-6-11
AAGGAACTAACCAACTGGACTTGGX_XX_X
15._GC-01-114-6-11
AAGGAACTAACCAACTGGACTTGGX_XX_X
16._POUND_7_/B
AAGGAACTAACCAACTGGACTTGGX_XX_X
17._RUQ_24
AA__AACTAACCAACTGGAC____X_XX_X
18._RUQ_24
________AA________AC____X_XX_X
19._RUQ_24B
________AA________AC____X_XX_X
20._RUQ_24
AAGGAACTAACCAACTGGACTTGGX_XX_X
21._RUQ_24
__GGAAAGAAGGAAAGCCACTTGGX_XX_X

Input profile: POUND_7_/B

 
Mars Center for Cocoa Science, Brazil
Location: 1611 13
 Dapeng Zhang, 2016

1._POUND_7_/B

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1611 3
 Dapeng Zhang, 2016

2._POUND_7_/B GC-01-114-6-11

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

3._POUND_7_/B GC-01-114-6-11

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

4._POUND_7_/B GC-01-114-6-11

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

5._POUND_7_/B

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1611 4 > FP
 Dapeng Zhang, 2016

6._POUND_7_/B

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1611 11 > F
 Dapeng Zhang, 2016

7._POUND_7_/B

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1611 10 > F
 Dapeng Zhang, 2016

8._POUND_7_/B

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1611 1 > FP
 Dapeng Zhang, 2016

9._POUND_7_/B

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1611 9
 Dapeng Zhang, 2016

10._POUND_7_/B

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1611 2
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

11._POUND_7_/B GC-01-114-6-11

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP3
 Mars, 2018

12._POUND_7_/B GC-01-114-6-11

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

13._POUND_7_/B GC-01-114-6-11

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10 > FP2
 Mars, 2018

14._POUND_7_/B GC-01-114-6-11

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11 > FP4
 Mars, 2018

15._POUND_7_/B GC-01-114-6-11

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

16._POUND_7_/B

identical
40 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B F407 T3
 Dapeng Zhang, 2016

17._POUND_7_/B RUQ_24

identical
23 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

18._POUND_7_/B RUQ_24

identical
12 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

19._POUND_7_/B RUQ_24B

identical
12 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

20._POUND_7_/B RUQ_24

98.8 %
40 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

21._POUND_7_/B RUQ_24

48.6 %
35 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP998 15TcSNP994
16TcSNP953 17TcSNP929 18TcSNP917 19TcSNP891 20TcSNP872
21TcSNP723 22TcSNP645 23TcSNP619 24TcSNP591 25TcSNP577
26TcSNP560 27TcSNP534 28TcSNP529 29TcSNP469 30TcSNP429
31TcSNP372 32TcSNP242 33TcSNP230 34TcSNP226 35TcSNP193
36TcSNP151 37TcSNP150 38TcSNP144 39TcSNP32 40TcSNP25