SNP Profiles of POUND 18 View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	CC	AA	CG	TT	CT	CC	TT	GT	CC	CC	AA	GG	CC	AA
1._POUND_18	CC	AA	CG	TT	CT	CC	TT	GT	CC	CC	AA	GG	CC	AA
2._GC-08-064-1-86	CC	AA	CG	TT	CT	CC	TT	GT	CC	CC	AA	GG	CC	AA
3._GC-08-064-1-86	CC	AA	CG	TT	CT	CC	TT	GT	CC	CC	AA	GG	CC	AA
4._GC-08-064-1-86	CC	AA	CG	TT	CT	CC	TT	GT	CC	CC	AA	GG	CC	AA
5._GC-08-064-1-86	CC	AA	CG	TT	CT	CC	TT	GT	CC	CC	AA	GG	CC	AA
6._GC-08-064-1-86	CC	AA	CG	TT	CT	CC	TT	GT	CC	CC	AA	GG	CC	AA
7._POUND_18	CC	AA	CG	TT	CT	CC	TT	GT	CC	CC	AA	GG	CC	AA
8._POUND_18	CC	AA	CG	TT	CT	CC	TT	GT	CC	CC	AA	GG	CC	AA
9._POUND_18	CC	AA	CG	TT	CT	CC	TT	GT	CC	CC	AA	GG	CC	AA
10._POUND_18	CC	AA	CG	TT	CT	CC	TT	GT	CC	CC	AA	GG	CC	AA
11._POUND_18	CC	AA	CG	TT	CT	CC	TT	GT	CC	CC	AA	GG	CC	AA
12._POUND_18	CC	AA	CG	TT	CT	CC	TT	GT	CC	CC	AA	GG	CC	AA
13._POUND_18	CC	AA	CG	TT	CT	CC	TT	GT	CC	CC	AA	GG	CC	AA
14._POUND_18	CC	AA	CG	TT	CT	CC	TT	GT	CC	CC	AA	GG	CC	AA
15._GC-08-064-1-86	CC	AA	CG	TT	CT	CC	TT	GT	CC	CC	AA	GG	CC	AA
16._GC-08-064-1-86	CC	AA	CG	TT	CT	CC	TT	GT	CC	CC	AA	GG	CC	AA
17._GC-08-064-1-86	CC	AA	CG	TT	CT	CC	TT	GT	CC	CC	AA	GG	CC	AA
18._GC-08-064-1-86	CC	AA	CG	TT	CT	CC	TT	GT	CC	CC	AA	GG	CC	AA
19._RUQ_874B	__	__	CG	__	__	__	__	GT	__	CC	__	GG	__	AA
20._RUQ_874	__	__	CG	__	__	__	__	GT	__	CC	__	GG	__	AA
21._RUQ_874	__	AA	CG	TT	__	__	__	GT	__	__	__	__	CC	AA
22._RUQ_874	CC	AG	CG	TT	CT	CC	TT	GT	CC	CC	AA	GG	CC	AA
23._GC-08-64-1-86	GG	AA	CG	AA	AG	CC	AA	AC	__	__	AA	GG	GG	AA
24._RUQ_874	GG	AA	CG	AA	AG	CC	AA	AC	__	__	AA	GG	GG	AA

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	TT	AA	GG	CC	CT	CC	GG	AA	CC	AC	GG	GT	CT	AC
1._POUND_18	TT	AA	GG	CC	CT	CC	GG	AA	CC	AC	GG	GT	CT	AC
2._GC-08-064-1-86	TT	AA	GG	CC	CT	CC	GG	AA	CC	AC	GG	GT	CT	AC
3._GC-08-064-1-86	TT	AA	GG	CC	CT	CC	GG	AA	CC	AC	GG	GT	CT	AC
4._GC-08-064-1-86	TT	AA	GG	CC	CT	CC	GG	AA	CC	AC	GG	GT	CT	AC
5._GC-08-064-1-86	TT	AA	GG	CC	CT	CC	GG	AA	CC	AC	GG	GT	CT	AC
6._GC-08-064-1-86	TT	AA	GG	CC	CT	CC	GG	AA	CC	AC	GG	GT	CT	AC
7._POUND_18	TT	AA	GG	CC	CT	CC	GG	AA	CC	AC	GG	GT	CT	AC
8._POUND_18	TT	AA	GG	CC	CT	CC	GG	AA	CC	AC	GG	GT	CT	AC
9._POUND_18	TT	AA	GG	CC	CT	CC	GG	AA	CC	AC	GG	GT	CT	AC
10._POUND_18	TT	AA	GG	CC	CT	CC	GG	AA	CC	AC	GG	GT	CT	AC
11._POUND_18	TT	AA	GG	CC	CT	CC	GG	AA	CC	AC	GG	GT	CT	AC
12._POUND_18	TT	AA	GG	CC	CT	CC	GG	AA	CC	AC	GG	GT	CT	AC
13._POUND_18	TT	AA	GG	CC	CT	CC	GG	AA	CC	AC	GG	GT	CT	AC
14._POUND_18	TT	AA	GG	CC	CT	CC	GG	AA	CC	AC	GG	GT	CT	AC
15._GC-08-064-1-86	TT	AA	GG	CC	CT	CC	GG	AA	CC	AC	GG	GT	CT	AC
16._GC-08-064-1-86	TT	AA	GG	CC	CT	CC	GG	AA	CC	AC	GG	GT	CT	AC
17._GC-08-064-1-86	TT	AA	GG	CC	CT	CC	GG	AA	CC	AC	GG	GT	CT	AC
18._GC-08-064-1-86	TT	AA	GG	CC	CT	CC	GG	AA	CC	AC	GG	GT	CT	AC
19._RUQ_874B	__	__	__	__	__	CC	GG	AA	__	AC	GG	__	__	AC
20._RUQ_874	__	__	__	__	__	CC	GG	AA	__	AC	GG	__	__	AC
21._RUQ_874	__	__	__	__	TT	CC	GG	__	CC	AC	GG	GT	CT	AC
22._RUQ_874	TT	AA	GG	CC	CT	CC	GG	AA	CC	AC	GG	GT	CT	AC
23._GC-08-64-1-86	AA	AA	GG	GG	AG	GG	CC	__	GG	AC	GG	AC	__	AC
24._RUQ_874	AA	AA	GG	GG	AG	GG	CC	__	GG	AC	GG	AC	__	AC

	29	30	31	32	33	34	35	36	37	38	39
_Input profile	AA	GG	AA	CT	AA	CC	CT	GT	AC	TT	GG	X_X	X_X	X_X
1._POUND_18	AA	GG	AA	CT	AA	CC	CT	GT	AC	TT	GG	X_X	X_X	X_X
2._GC-08-064-1-86	AA	GG	AA	CT	AA	CC	CT	GT	AC	TT	GG	X_X	X_X	X_X
3._GC-08-064-1-86	AA	GG	AA	CT	AA	CC	CT	GT	AC	TT	GG	X_X	X_X	X_X
4._GC-08-064-1-86	AA	GG	AA	CT	AA	CC	CT	GT	AC	TT	GG	X_X	X_X	X_X
5._GC-08-064-1-86	AA	GG	AA	CT	AA	CC	CT	GT	AC	TT	GG	X_X	X_X	X_X
6._GC-08-064-1-86	AA	GG	AA	CT	AA	CC	CT	GT	AC	TT	GG	X_X	X_X	X_X
7._POUND_18	AA	GG	AA	CT	AA	CC	CT	GT	AC	TT	GG	X_X	X_X	X_X
8._POUND_18	AA	GG	AA	CT	AA	CC	CT	GT	AC	TT	GG	X_X	X_X	X_X
9._POUND_18	AA	GG	AA	CT	AA	CC	CT	GT	AC	TT	GG	X_X	X_X	X_X
10._POUND_18	AA	GG	AA	CT	AA	CC	CT	GT	AC	TT	GG	X_X	X_X	X_X
11._POUND_18	AA	GG	AA	CT	AA	CC	CT	GT	AC	TT	GG	X_X	X_X	X_X
12._POUND_18	AA	GG	AA	CT	AA	CC	CT	GT	AC	TT	GG	X_X	X_X	X_X
13._POUND_18	AA	GG	AA	CT	AA	CC	CT	GT	AC	TT	GG	X_X	X_X	X_X
14._POUND_18	AA	GG	AA	CT	AA	CC	CT	GT	AC	TT	GG	X_X	X_X	X_X
15._GC-08-064-1-86	AA	GG	AA	CT	AA	CC	CT	GT	AC	TT	GG	X_X	X_X	X_X
16._GC-08-064-1-86	AA	GG	AA	CT	AA	CC	CT	GT	AC	TT	GG	X_X	X_X	X_X
17._GC-08-064-1-86	AA	GG	AA	CT	AA	CC	CT	GT	AC	TT	GG	X_X	X_X	X_X
18._GC-08-064-1-86	AA	GG	AA	CT	AA	CC	CT	GT	AC	TT	GG	X_X	X_X	X_X
19._RUQ_874B	__	__	__	__	AA	__	__	__	AC	__	__	X_X	X_X	X_X
20._RUQ_874	__	__	__	__	AA	__	__	__	AC	__	__	X_X	X_X	X_X
21._RUQ_874	AA	__	AA	CT	AA	CC	CT	GT	AC	__	__	X_X	X_X	X_X
22._RUQ_874	AA	AG	AA	CT	AA	CC	CT	GT	AC	TT	GG	X_X	X_X	X_X
23._GC-08-64-1-86	__	GG	AA	AG	AA	CC	AG	AC	AC	TT	GG	X_X	X_X	X_X
24._RUQ_874	__	GG	AA	AG	AA	CC	AG	AC	AC	TT	GG	X_X	X_X	X_X

Input profile: POUND_18

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 6B F447 T2

Dapeng Zhang, 2016

1._POUND_18

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8186 7

Dapeng Zhang, 2016

2._POUND_18 GC-08-064-1-86

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: 6

3._POUND_18 GC-08-064-1-86

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

4._POUND_18 GC-08-064-1-86

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

5._POUND_18 GC-08-064-1-86

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2 > FP2

6._POUND_18 GC-08-064-1-86

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1

7._POUND_18

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8186 2 > FP

Dapeng Zhang, 2016

8._POUND_18

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8186 12

Dapeng Zhang, 2016

9._POUND_18

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8186 11

Dapeng Zhang, 2016

10._POUND_18

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8186 9

Dapeng Zhang, 2016

11._POUND_18

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8186 6

Dapeng Zhang, 2016

12._POUND_18

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8186 4

Dapeng Zhang, 2016

13._POUND_18

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8186 3

Dapeng Zhang, 2016

14._POUND_18

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8186 1

Dapeng Zhang, 2016

15._POUND_18 GC-08-064-1-86

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 7

Notes: 7

16._POUND_18 GC-08-064-1-86

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 9

Notes: 9

17._POUND_18 GC-08-064-1-86

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 11

Notes: 11

18._POUND_18 GC-08-064-1-86

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 12

Notes: 12

19._POUND_18 RUQ_874B

identical
13 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

20._POUND_18 RUQ_874

identical
13 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

Population Assignment:

21._POUND_18 RUQ_874

97.8 %
23 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

22._POUND_18 RUQ_874

97.4 %
39 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

23._POUND_18 GC-08-64-1-86

52.9 %
34 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Field: 8, Block: 1, Rep: 86, Tree: 1

Notes: MCCS_Structure_refs_above_0.9membership

24._POUND_18 RUQ_874

52.9 %
34 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

Key to SNP Markers

Key to SNP Markers

1	TcSNP1520	2	TcSNP1484	3	TcSNP1458	4	TcSNP1442	5	TcSNP1414
6	TcSNP1350	7	TcSNP1270	8	TcSNP1253	9	TcSNP1165	10	TcSNP1144
11	TcSNP1075	12	TcSNP1062	13	TcSNP1060	14	TcSNP998	15	TcSNP994
16	TcSNP953	17	TcSNP929	18	TcSNP917	19	TcSNP891	20	TcSNP872
21	TcSNP723	22	TcSNP645	23	TcSNP619	24	TcSNP591	25	TcSNP577
26	TcSNP560	27	TcSNP534	28	TcSNP529	29	TcSNP469	30	TcSNP429
31	TcSNP372	32	TcSNP242	33	TcSNP230	34	TcSNP193	35	TcSNP151
36	TcSNP150	37	TcSNP144	38	TcSNP32	39	TcSNP25