SNP Profiles of POUND 10 /B   View Data

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 Key

 1234567891011121314
_Input profile
CCAAGGTTTTTTTTCCCCAAGGCCGGTT
1._GC-01-115-6-12
CCAAGGTTTTTTTTCCCCAAGGCCGGTT
2._GC-01-115-6-12
CCAAGGTTTTTTTTCCCCAAGGCCGGTT
3._GC-01-115-6-12
CCAAGGTTTTTTTTCCCCAAGGCCGGTT
4._GC-08-162-4-05
CCAAGGTTTTTTTTCCCCAAGGCCGGTT
5._GC-08-163-4-06
CCAAGGTTTTTTTTCCCCAAGGCCGGTT
6._GC-08-163-4-06
CCAAGGTTTTTTTTCCCCAAGGCCGGTT
7._POUND_10_/B
CCAAGGTTTTTTTTCCCCAAGGCCGGTT
8._POUND_10_/B
CCAAGGTTTTTTTTCCCCAAGGCCGGTT
9._POUND_10_/B
CCAAGGTTTTTTTTCCCCAAGGCCGGTT
10._POUND_10_/B
CCAAGGTTTTTTTTCCCCAAGGCCGGTT
11._POUND_10_/B
CCAAGGTTTTTTTTCCCCAAGGCCGGTT
12._POUND_10_/B
CCAAGGTTTTTTTTCCCCAAGGCCGGTT
13._GC-01-115-6-12
CCAAGGTT__TTTTCCCCAAGGCCGGTT
14._POUND_10_/B
CCAAGGTT__TTTTCCCCAAGGCCGGTT
15._RUQ_1618
__AAGGTT____TT________CCGG__
16._RUQ_1618
CCAGGGTTTTTTTTCCCCAAGGCCGGTT
17._GC-08-162-4-05
CCAGCCTTCTTTGTCTCCAAGGCCAATT
18._POUND_10_/B
CCAGCCTTCTTTGTCTCCAAGGCCAATT
19._GC-01-115-6-12
CCAGCCTTCTTTGTCTCCAAGGCCAATT
20._GC-01-115-6-12
CCAGCCTTCTTTGTCTCCAAGGCCAATT
21._GC-08-162-4-05
CCAGCCTTCTTTGTCTCCAAGGCCAATT
22._POUND_10_/B
CCAGCCTTCTTTGTCTCCAAGGCCAATT
23._GC-08-162-4-05
CCAGCCTTCTTTGTCTCCAAGGCCAATT
24._GC-08-162-4-05
CCAGCCTTCTTTGTCTCCAAGGCCAATT
25._GC-08-162-4-05
CCAGCCTTCTTTGTCTCCAAGGCCAATT
26._GC-08-162-4-05
CCAGCCTTCTTTGTCTCCAAGGCCAATT
27._POUND_10_/B
CCAGCCTTCTTTGTCTCCAAGGCCAATT
28._POUND_10_/B
CCAGCCTTCTTTGTCTCCAAGGCCAATT
29._POUND_10_/B
CCAGCCTTCTTTGTCTCCAAGGCCAATT
30._POUND_10_/B
CCAGCCTTCTTTGTCTCCAAGGCCAATT
31._POUND_10_/B
CCAGCCTTCTTTGTCTCCAAGGCCAATT
32._POUND_10_/B
CCAGCCTTCTTTGTCTCCAAGGCCAATT
33._POUND_10_/B
CCAGCCTTCTTTGTCTCCAAGGCCAATT
34._GC-08-162-4-05
CCAGCCTTCTTTGTCTCCAAGGCCAATT
35._POUND_10_/B
CTAGGGCTCTCCTTCCCTAAAACCAGCT
36._GC-08-163-4-06
CTAGGGCTCTCCTTCCCTAAAACCAGCT
 1516171819202122232425262728
_Input profile
AAGGTTTTCGGGAACCAAGGTTCCCCAA
1._GC-01-115-6-12
AAGGTTTTCGGGAACCAAGGTTCCCCAA
2._GC-01-115-6-12
AAGGTTTTCGGGAACCAAGGTTCCCCAA
3._GC-01-115-6-12
AAGGTTTTCGGGAACCAAGGTTCCCCAA
4._GC-08-162-4-05
AAGGTTTTCGGGAACCAAGGTTCCCCAA
5._GC-08-163-4-06
AAGGTTTTCGGGAACCAAGGTTCCCCAA
6._GC-08-163-4-06
AAGGTTTTCGGGAACCAAGGTTCCCCAA
7._POUND_10_/B
AAGGTTTTCGGGAACCAAGGTTCCCCAA
8._POUND_10_/B
AAGGTTTTCGGGAACCAAGGTTCCCCAA
9._POUND_10_/B
AAGGTTTTCGGGAACCAAGGTTCCCCAA
10._POUND_10_/B
AAGGTTTTCGGGAACCAAGGTTCCCCAA
11._POUND_10_/B
AAGGTTTTCGGGAACCAAGGTTCCCCAA
12._POUND_10_/B
AAGGTTTTCGGGAACCAAGGTTCCCCAA
13._GC-01-115-6-12
AAGGTTTTCGGGAACCAAGGTTCCCCAA
14._POUND_10_/B
AAGGTTTTCGGGAACCAAGGTTCCCCAA
15._RUQ_1618
______TTCGGG__CCAAGGTTCCCCAA
16._RUQ_1618
AAGGTTTTCGGGAACCAAGGTTCCCCAA
17._GC-08-162-4-05
AACGCTCTCGGGAACTACGGGGCTACAG
18._POUND_10_/B
AACGCTCTCGGGAACTACGGGGCTACAG
19._GC-01-115-6-12
AACGCTCTCGGGAACTACGGGGCTACAG
20._GC-01-115-6-12
AACGCTCTCGGGAACTACGGGGCTACAG
21._GC-08-162-4-05
AACGCTCTCGGGAACTACGGGGCTACAG
22._POUND_10_/B
AACGCTCTCGGGAACTACGGGGCTACAG
23._GC-08-162-4-05
AACGCTCTCGGGAACTACGGGGCTACAG
24._GC-08-162-4-05
AACGCTCTCGGGAACTACGGGGCTACAG
25._GC-08-162-4-05
AACGCTCTCGGGAACTACGGGGCTACAG
26._GC-08-162-4-05
AACGCTCTCGGGAACTACGGGGCTACAG
27._POUND_10_/B
AACGCTCTCGGGAACTACGGGGCTACAG
28._POUND_10_/B
AACGCTCTCGGGAACTACGGGGCTACAG
29._POUND_10_/B
AACGCTCTCGGGAACTACGGGGCTACAG
30._POUND_10_/B
AACGCTCTCGGGAACTACGGGGCTACAG
31._POUND_10_/B
AACGCTCTCGGGAACTACGGGGCTACAG
32._POUND_10_/B
AACGCTCTCGGGAACTACGGGGCTACAG
33._POUND_10_/B
AACGCTCTCGGGAACTACGGGGCTACAG
34._GC-08-162-4-05
AACGCTCTCGGGAACTACGGGGCTACAG
35._POUND_10_/B
ATCGCTCCCGGGAGTTAACGGTCTCCAA
36._GC-08-163-4-06
ATCGCTCCCGGGAGTTAACGGTCTCCAA
 2930313233343536373839   
_Input profile
GGAACCGGCCAACCGGAATTGGX_XX_XX_X
1._GC-01-115-6-12
GGAACCGGCCAACCGGAATTGGX_XX_XX_X
2._GC-01-115-6-12
GGAACCGGCCAACCGGAATTGGX_XX_XX_X
3._GC-01-115-6-12
GGAACCGGCCAACCGGAATTGGX_XX_XX_X
4._GC-08-162-4-05
GGAACCGGCCAACCGGAATTGGX_XX_XX_X
5._GC-08-163-4-06
GGAACCGGCCAACCGGAATTGGX_XX_XX_X
6._GC-08-163-4-06
GGAACCGGCCAACCGGAATTGGX_XX_XX_X
7._POUND_10_/B
GGAACCGGCCAACCGGAATTGGX_XX_XX_X
8._POUND_10_/B
GGAACCGGCCAACCGGAATTGGX_XX_XX_X
9._POUND_10_/B
GGAACCGGCCAACCGGAATTGGX_XX_XX_X
10._POUND_10_/B
GGAACCGGCCAACCGGAATTGGX_XX_XX_X
11._POUND_10_/B
GGAACCGGCCAACCGGAATTGGX_XX_XX_X
12._POUND_10_/B
GGAACCGGCCAACCGGAATTGGX_XX_XX_X
13._GC-01-115-6-12
GGAACCGGCCAACCGGAATTGGX_XX_XX_X
14._POUND_10_/B
GGAACCGGCCAACCGGAATTGGX_XX_XX_X
15._RUQ_1618
__AACCGGCCAACCGGAA____X_XX_XX_X
16._RUQ_1618
GGAACCGGCCAACCGGAATTGGX_XX_XX_X
17._GC-08-162-4-05
GGAACTAGCCCCCTGTACATGGX_XX_XX_X
18._POUND_10_/B
GGAACTAGCCCCCTGTACATGGX_XX_XX_X
19._GC-01-115-6-12
GGAACTAGCCCCCTGTACATGGX_XX_XX_X
20._GC-01-115-6-12
GGAACTAGCCCCCTGTACATGGX_XX_XX_X
21._GC-08-162-4-05
GGAACTAGCCCCCTGTACATGGX_XX_XX_X
22._POUND_10_/B
GGAACTAGCCCCCTGTACATGGX_XX_XX_X
23._GC-08-162-4-05
GGAACTAGCCCCCTGTACATGGX_XX_XX_X
24._GC-08-162-4-05
GGAACTAGCCCCCTGTACATGGX_XX_XX_X
25._GC-08-162-4-05
GGAACTAGCCCCCTGTACATGGX_XX_XX_X
26._GC-08-162-4-05
GGAACTAGCCCCCTGTACATGGX_XX_XX_X
27._POUND_10_/B
GGAACTAGCCCCCTGTACATGGX_XX_XX_X
28._POUND_10_/B
GGAACTAGCCCCCTGTACATGGX_XX_XX_X
29._POUND_10_/B
GGAACTAGCCCCCTGTACATGGX_XX_XX_X
30._POUND_10_/B
GGAACTAGCCCCCTGTACATGGX_XX_XX_X
31._POUND_10_/B
GGAACTAGCCCCCTGTACATGGX_XX_XX_X
32._POUND_10_/B
GGAACTAGCCCCCTGTACATGGX_XX_XX_X
33._POUND_10_/B
GG__CTAGCCCCCTGTACATGGX_XX_XX_X
34._GC-08-162-4-05
GG__CTAGCCCCCTGTACATGGX_XX_XX_X
35._POUND_10_/B
GGAACCAACCACCTGTCCATCGX_XX_XX_X
36._GC-08-163-4-06
GGAACCAACCACCTGTCCATCGX_XX_XX_X

Input profile: POUND_10_/B

 
Mars Center for Cocoa Science, Brazil
Location: 1612 11 > F
 Dapeng Zhang, 2016

1._POUND_10_/B GC-01-115-6-12

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP2
 Mars, 2018

2._POUND_10_/B GC-01-115-6-12

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP4
 Mars, 2018

3._POUND_10_/B GC-01-115-6-12

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11 > FP3
 Mars, 2018

4._POUND_10_/B GC-08-162-4-05

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

5._POUND_10_/B GC-08-163-4-06

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

6._POUND_10_/B GC-08-163-4-06

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

7._POUND_10_/B

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1612 1 > FP
 Dapeng Zhang, 2016

8._POUND_10_/B

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1612 3 > FP
 Dapeng Zhang, 2016

9._POUND_10_/B

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8405 7
 Dapeng Zhang, 2016

10._POUND_10_/B

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8406 2
 Dapeng Zhang, 2016

11._POUND_10_/B

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8406 10
 Dapeng Zhang, 2016

12._POUND_10_/B

identical
39 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B F429 T13
 Dapeng Zhang, 2016

13._POUND_10_/B GC-01-115-6-12

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

14._POUND_10_/B

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1612 9
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

15._POUND_10_/B RUQ_1618

identical
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

16._POUND_10_/B RUQ_1618

98.7 %
39 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

17._POUND_10_/B GC-08-162-4-05

66.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

18._POUND_10_/B

66.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8405 10
 Dapeng Zhang, 2016

19._POUND_10_/B GC-01-115-6-12

66.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP1
 Mars, 2018

20._POUND_10_/B GC-01-115-6-12

66.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

21._POUND_10_/B GC-08-162-4-05

66.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

22._POUND_10_/B

66.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8405 8
 Dapeng Zhang, 2016

23._POUND_10_/B GC-08-162-4-05

66.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

24._POUND_10_/B GC-08-162-4-05

66.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

25._POUND_10_/B GC-08-162-4-05

66.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

26._POUND_10_/B GC-08-162-4-05

66.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

27._POUND_10_/B

66.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8405 6
 Dapeng Zhang, 2016

28._POUND_10_/B

66.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1612 10
 Dapeng Zhang, 2016

29._POUND_10_/B

66.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1612 2 > FP
 Dapeng Zhang, 2016

30._POUND_10_/B

66.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8405 2
 Dapeng Zhang, 2016

31._POUND_10_/B

66.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8405 4
 Dapeng Zhang, 2016

32._POUND_10_/B

66.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8405 5
 Dapeng Zhang, 2016

33._POUND_10_/B

65.8 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8405 11
 Dapeng Zhang, 2016

34._POUND_10_/B GC-08-162-4-05

65.8 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

35._POUND_10_/B

60.3 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8406 7
 Dapeng Zhang, 2016

36._POUND_10_/B GC-08-163-4-06

60.3 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1270 7TcSNP1253 8TcSNP1165 9TcSNP1144 10TcSNP1075
11TcSNP1062 12TcSNP1060 13TcSNP998 14TcSNP994 15TcSNP953
16TcSNP929 17TcSNP917 18TcSNP891 19TcSNP872 20TcSNP723
21TcSNP645 22TcSNP619 23TcSNP591 24TcSNP577 25TcSNP560
26TcSNP534 27TcSNP529 28TcSNP469 29TcSNP429 30TcSNP372
31TcSNP242 32TcSNP230 33TcSNP226 34TcSNP193 35TcSNP151
36TcSNP150 37TcSNP144 38TcSNP32 39TcSNP25