SNP Profiles of POUND 10 /B   View Data

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 Key

 1234567891011121314
_Input profile
CCAAGGTTTTTTCCCCAAGGCCGGTTAA
1._GC-01-115-6-12
CCAAGGTTTTTTCCCCAAGGCCGGTTAA
2._GC-01-115-6-12
CCAAGGTTTTTTCCCCAAGGCCGGTTAA
3._GC-01-115-6-12
CCAAGGTTTTTTCCCCAAGGCCGGTTAA
4._GC-01-115-6-12
CCAAGGTTTTTTCCCCAAGGCCGGTTAA
5._GC-08-162-4-05
CCAAGGTTTTTTCCCCAAGGCCGGTTAA
6._GC-08-163-4-06
CCAAGGTTTTTTCCCCAAGGCCGGTTAA
7._GC-08-163-4-06
CCAAGGTTTTTTCCCCAAGGCCGGTTAA
8._POUND_10_/B
CCAAGGTTTTTTCCCCAAGGCCGGTTAA
9._POUND_10_/B
CCAAGGTTTTTTCCCCAAGGCCGGTTAA
10._POUND_10_/B
CCAAGGTTTTTTCCCCAAGGCCGGTTAA
11._POUND_10_/B
CCAAGGTTTTTTCCCCAAGGCCGGTTAA
12._POUND_10_/B
CCAAGGTTTTTTCCCCAAGGCCGGTTAA
13._POUND_10_/B
CCAAGGTTTTTTCCCCAAGGCCGGTTAA
14._POUND_10_/B
CCAAGGTTTTTTCCCCAAGGCCGGTTAA
15._RUQ_1618
__AAGGTT__TT________CCGG____
16._RUQ_1618
CCAGGGTTTTTTCCCCAAGGCCGGTTAA
17._GC-08-162-4-05
CCAGCCTTTTGTCTCCAAGGCCAATTAA
18._POUND_10_/B
CCAGCCTTTTGTCTCCAAGGCCAATTAA
19._GC-01-115-6-12
CCAGCCTTTTGTCTCCAAGGCCAATTAA
20._GC-01-115-6-12
CCAGCCTTTTGTCTCCAAGGCCAATTAA
21._GC-08-162-4-05
CCAGCCTTTTGTCTCCAAGGCCAATTAA
22._POUND_10_/B
CCAGCCTTTTGTCTCCAAGGCCAATTAA
23._GC-08-162-4-05
CCAGCCTTTTGTCTCCAAGGCCAATTAA
24._GC-08-162-4-05
CCAGCCTTTTGTCTCCAAGGCCAATTAA
25._GC-08-162-4-05
CCAGCCTTTTGTCTCCAAGGCCAATTAA
26._GC-08-162-4-05
CCAGCCTTTTGTCTCCAAGGCCAATTAA
27._POUND_10_/B
CCAGCCTTTTGTCTCCAAGGCCAATTAA
28._POUND_10_/B
CCAGCCTTTTGTCTCCAAGGCCAATTAA
29._POUND_10_/B
CCAGCCTTTTGTCTCCAAGGCCAATTAA
30._POUND_10_/B
CCAGCCTTTTGTCTCCAAGGCCAATTAA
31._POUND_10_/B
CCAGCCTTTTGTCTCCAAGGCCAATTAA
32._POUND_10_/B
CCAGCCTTTTGTCTCCAAGGCCAATTAA
33._POUND_10_/B
CCAGCCTTTTGTCTCCAAGGCCAATTAA
34._GC-08-162-4-05
CCAGCCTTTTGTCTCCAAGGCCAATTAA
35._POUND_10_/B
CTAGGGCTCCTTCCCTAAAACCAGCTAT
36._GC-08-163-4-06
CTAGGGCTCCTTCCCTAAAACCAGCTAT
 1516171819202122232425262728
_Input profile
GGTTTTCGGGAACCAAGGTTCCCCAAGG
1._GC-01-115-6-12
GGTTTTCGGGAACCAAGGTTCCCCAAGG
2._GC-01-115-6-12
GGTTTTCGGGAACCAAGGTTCCCCAAGG
3._GC-01-115-6-12
GGTTTTCGGGAACCAAGGTTCCCCAAGG
4._GC-01-115-6-12
GGTTTTCGGGAACCAAGGTTCCCCAAGG
5._GC-08-162-4-05
GGTTTTCGGGAACCAAGGTTCCCCAAGG
6._GC-08-163-4-06
GGTTTTCGGGAACCAAGGTTCCCCAAGG
7._GC-08-163-4-06
GGTTTTCGGGAACCAAGGTTCCCCAAGG
8._POUND_10_/B
GGTTTTCGGGAACCAAGGTTCCCCAAGG
9._POUND_10_/B
GGTTTTCGGGAACCAAGGTTCCCCAAGG
10._POUND_10_/B
GGTTTTCGGGAACCAAGGTTCCCCAAGG
11._POUND_10_/B
GGTTTTCGGGAACCAAGGTTCCCCAAGG
12._POUND_10_/B
GGTTTTCGGGAACCAAGGTTCCCCAAGG
13._POUND_10_/B
GGTTTTCGGGAACCAAGGTTCCCCAAGG
14._POUND_10_/B
GGTTTTCGGGAACCAAGGTTCCCCAAGG
15._RUQ_1618
____TTCGGG__CCAAGGTTCCCCAA__
16._RUQ_1618
GGTTTTCGGGAACCAAGGTTCCCCAAGG
17._GC-08-162-4-05
CGCTCTCGGGAACTACGGGGCTACAGGG
18._POUND_10_/B
CGCTCTCGGGAACTACGGGGCTACAGGG
19._GC-01-115-6-12
CGCTCTCGGGAACTACGGGGCTACAGGG
20._GC-01-115-6-12
CGCTCTCGGGAACTACGGGGCTACAGGG
21._GC-08-162-4-05
CGCTCTCGGGAACTACGGGGCTACAGGG
22._POUND_10_/B
CGCTCTCGGGAACTACGGGGCTACAGGG
23._GC-08-162-4-05
CGCTCTCGGGAACTACGGGGCTACAGGG
24._GC-08-162-4-05
CGCTCTCGGGAACTACGGGGCTACAGGG
25._GC-08-162-4-05
CGCTCTCGGGAACTACGGGGCTACAGGG
26._GC-08-162-4-05
CGCTCTCGGGAACTACGGGGCTACAGGG
27._POUND_10_/B
CGCTCTCGGGAACTACGGGGCTACAGGG
28._POUND_10_/B
CGCTCTCGGGAACTACGGGGCTACAGGG
29._POUND_10_/B
CGCTCTCGGGAACTACGGGGCTACAGGG
30._POUND_10_/B
CGCTCTCGGGAACTACGGGGCTACAGGG
31._POUND_10_/B
CGCTCTCGGGAACTACGGGGCTACAGGG
32._POUND_10_/B
CGCTCTCGGGAACTACGGGGCTACAGGG
33._POUND_10_/B
CGCTCTCGGGAACTACGGGGCTACAGGG
34._GC-08-162-4-05
CGCTCTCGGGAACTACGGGGCTACAGGG
35._POUND_10_/B
CGCTCCCGGGAGTTAACGGTCTCCAAGG
36._GC-08-163-4-06
CGCTCCCGGGAGTTAACGGTCTCCAAGG
 29303132333435363738    
_Input profile
AACCGGCCAACCGGAATTGGX_XX_XX_XX_X
1._GC-01-115-6-12
AACCGGCCAACCGGAATTGGX_XX_XX_XX_X
2._GC-01-115-6-12
AACCGGCCAACCGGAATTGGX_XX_XX_XX_X
3._GC-01-115-6-12
AACCGGCCAACCGGAATTGGX_XX_XX_XX_X
4._GC-01-115-6-12
AACCGGCCAACCGGAATTGGX_XX_XX_XX_X
5._GC-08-162-4-05
AACCGGCCAACCGGAATTGGX_XX_XX_XX_X
6._GC-08-163-4-06
AACCGGCCAACCGGAATTGGX_XX_XX_XX_X
7._GC-08-163-4-06
AACCGGCCAACCGGAATTGGX_XX_XX_XX_X
8._POUND_10_/B
AACCGGCCAACCGGAATTGGX_XX_XX_XX_X
9._POUND_10_/B
AACCGGCCAACCGGAATTGGX_XX_XX_XX_X
10._POUND_10_/B
AACCGGCCAACCGGAATTGGX_XX_XX_XX_X
11._POUND_10_/B
AACCGGCCAACCGGAATTGGX_XX_XX_XX_X
12._POUND_10_/B
AACCGGCCAACCGGAATTGGX_XX_XX_XX_X
13._POUND_10_/B
AACCGGCCAACCGGAATTGGX_XX_XX_XX_X
14._POUND_10_/B
AACCGGCCAACCGGAATTGGX_XX_XX_XX_X
15._RUQ_1618
AACCGGCCAACCGGAA____X_XX_XX_XX_X
16._RUQ_1618
AACCGGCCAACCGGAATTGGX_XX_XX_XX_X
17._GC-08-162-4-05
AACTAGCCCCCTGTACATGGX_XX_XX_XX_X
18._POUND_10_/B
AACTAGCCCCCTGTACATGGX_XX_XX_XX_X
19._GC-01-115-6-12
AACTAGCCCCCTGTACATGGX_XX_XX_XX_X
20._GC-01-115-6-12
AACTAGCCCCCTGTACATGGX_XX_XX_XX_X
21._GC-08-162-4-05
AACTAGCCCCCTGTACATGGX_XX_XX_XX_X
22._POUND_10_/B
AACTAGCCCCCTGTACATGGX_XX_XX_XX_X
23._GC-08-162-4-05
AACTAGCCCCCTGTACATGGX_XX_XX_XX_X
24._GC-08-162-4-05
AACTAGCCCCCTGTACATGGX_XX_XX_XX_X
25._GC-08-162-4-05
AACTAGCCCCCTGTACATGGX_XX_XX_XX_X
26._GC-08-162-4-05
AACTAGCCCCCTGTACATGGX_XX_XX_XX_X
27._POUND_10_/B
AACTAGCCCCCTGTACATGGX_XX_XX_XX_X
28._POUND_10_/B
AACTAGCCCCCTGTACATGGX_XX_XX_XX_X
29._POUND_10_/B
AACTAGCCCCCTGTACATGGX_XX_XX_XX_X
30._POUND_10_/B
AACTAGCCCCCTGTACATGGX_XX_XX_XX_X
31._POUND_10_/B
AACTAGCCCCCTGTACATGGX_XX_XX_XX_X
32._POUND_10_/B
AACTAGCCCCCTGTACATGGX_XX_XX_XX_X
33._POUND_10_/B
__CTAGCCCCCTGTACATGGX_XX_XX_XX_X
34._GC-08-162-4-05
__CTAGCCCCCTGTACATGGX_XX_XX_XX_X
35._POUND_10_/B
AACCAACCACCTGTCCATCGX_XX_XX_XX_X
36._GC-08-163-4-06
AACCAACCACCTGTCCATCGX_XX_XX_XX_X

Input profile: POUND_10_/B

 
Mars Center for Cocoa Science, Brazil
Location: 1612 9
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

1._POUND_10_/B GC-01-115-6-12

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP2
 Mars, 2018

2._POUND_10_/B GC-01-115-6-12

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP4
 Mars, 2018

3._POUND_10_/B GC-01-115-6-12

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

4._POUND_10_/B GC-01-115-6-12

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11 > FP3
 Mars, 2018

5._POUND_10_/B GC-08-162-4-05

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

6._POUND_10_/B GC-08-163-4-06

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

7._POUND_10_/B GC-08-163-4-06

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

8._POUND_10_/B

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1612 1 > FP
 Dapeng Zhang, 2016

9._POUND_10_/B

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1612 11 > F
 Dapeng Zhang, 2016

10._POUND_10_/B

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1612 3 > FP
 Dapeng Zhang, 2016

11._POUND_10_/B

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8405 7
 Dapeng Zhang, 2016

12._POUND_10_/B

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8406 2
 Dapeng Zhang, 2016

13._POUND_10_/B

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8406 10
 Dapeng Zhang, 2016

14._POUND_10_/B

identical
38 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B F429 T13
 Dapeng Zhang, 2016

15._POUND_10_/B RUQ_1618

identical
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

16._POUND_10_/B RUQ_1618

98.7 %
38 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

17._POUND_10_/B GC-08-162-4-05

67.1 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

18._POUND_10_/B

67.1 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8405 10
 Dapeng Zhang, 2016

19._POUND_10_/B GC-01-115-6-12

67.1 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP1
 Mars, 2018

20._POUND_10_/B GC-01-115-6-12

67.1 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

21._POUND_10_/B GC-08-162-4-05

67.1 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

22._POUND_10_/B

67.1 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8405 8
 Dapeng Zhang, 2016

23._POUND_10_/B GC-08-162-4-05

67.1 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

24._POUND_10_/B GC-08-162-4-05

67.1 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

25._POUND_10_/B GC-08-162-4-05

67.1 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

26._POUND_10_/B GC-08-162-4-05

67.1 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

27._POUND_10_/B

67.1 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8405 6
 Dapeng Zhang, 2016

28._POUND_10_/B

67.1 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1612 10
 Dapeng Zhang, 2016

29._POUND_10_/B

67.1 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1612 2 > FP
 Dapeng Zhang, 2016

30._POUND_10_/B

67.1 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8405 2
 Dapeng Zhang, 2016

31._POUND_10_/B

67.1 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8405 4
 Dapeng Zhang, 2016

32._POUND_10_/B

67.1 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8405 5
 Dapeng Zhang, 2016

33._POUND_10_/B

66.2 %
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8405 11
 Dapeng Zhang, 2016

34._POUND_10_/B GC-08-162-4-05

66.2 %
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

35._POUND_10_/B

60.5 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8406 7
 Dapeng Zhang, 2016

36._POUND_10_/B GC-08-163-4-06

60.5 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1270
6TcSNP1253 7TcSNP1165 8TcSNP1144 9TcSNP1075 10TcSNP1062
11TcSNP1060 12TcSNP998 13TcSNP994 14TcSNP953 15TcSNP929
16TcSNP917 17TcSNP891 18TcSNP872 19TcSNP723 20TcSNP645
21TcSNP619 22TcSNP591 23TcSNP577 24TcSNP560 25TcSNP534
26TcSNP529 27TcSNP469 28TcSNP429 29TcSNP372 30TcSNP242
31TcSNP230 32TcSNP226 33TcSNP193 34TcSNP151 35TcSNP150
36TcSNP144 37TcSNP32 38TcSNP25