SNP Profiles of POUND 10 /B   View Data

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 Key

 1234567891011121314
_Input profile
CCAAGGTTTTCCTTTTCCCCAAGGCCGG
1._GC-01-115-6-12
CCAAGGTTTT__TTTTCCCCAAGGCCGG
2._GC-01-115-6-12
CCAAGGTTTT__TTTTCCCCAAGGCCGG
3._GC-01-115-6-12
CCAAGGTTTT__TTTTCCCCAAGGCCGG
4._GC-08-162-4-05
CCAAGGTTTT__TTTTCCCCAAGGCCGG
5._GC-08-163-4-06
CCAAGGTTTT__TTTTCCCCAAGGCCGG
6._GC-08-163-4-06
CCAAGGTTTT__TTTTCCCCAAGGCCGG
7._POUND_10_/B
CCAAGGTTTT__TTTTCCCCAAGGCCGG
8._POUND_10_/B
CCAAGGTTTT__TTTTCCCCAAGGCCGG
9._POUND_10_/B
CCAAGGTTTT__TTTTCCCCAAGGCCGG
10._POUND_10_/B
CCAAGGTTTT__TTTTCCCCAAGGCCGG
11._POUND_10_/B
CCAAGGTTTT__TTTTCCCCAAGGCCGG
12._POUND_10_/B
CCAAGGTTTT__TTTTCCCCAAGGCCGG
13._GC-01-115-6-12
CCAAGGTT____TTTTCCCCAAGGCCGG
14._POUND_10_/B
CCAAGGTT____TTTTCCCCAAGGCCGG
15._RUQ_1618
__AAGGTT______TT________CCGG
16._RUQ_1618
CCAGGGTTTTCCTTTTCCCCAAGGCCGG
17._GC-08-162-4-05
CCAGCCTTCTAATTGTCTCCAAGGCCAA
18._POUND_10_/B
CCAGCCTTCTAATTGTCTCCAAGGCCAA
19._GC-01-115-6-12
CCAGCCTTCTAATTGTCTCCAAGGCCAA
20._GC-01-115-6-12
CCAGCCTTCTAATTGTCTCCAAGGCCAA
21._GC-08-162-4-05
CCAGCCTTCTAATTGTCTCCAAGGCCAA
22._POUND_10_/B
CCAGCCTTCTAATTGTCTCCAAGGCCAA
23._GC-08-162-4-05
CCAGCCTTCTAATTGTCTCCAAGGCCAA
24._GC-08-162-4-05
CCAGCCTTCTAATTGTCTCCAAGGCCAA
25._GC-08-162-4-05
CCAGCCTTCTAATTGTCTCCAAGGCCAA
26._GC-08-162-4-05
CCAGCCTTCTAATTGTCTCCAAGGCCAA
27._POUND_10_/B
CCAGCCTTCTAATTGTCTCCAAGGCCAA
28._POUND_10_/B
CCAGCCTTCTAATTGTCTCCAAGGCCAA
29._POUND_10_/B
CCAGCCTTCTAATTGTCTCCAAGGCCAA
30._POUND_10_/B
CCAGCCTTCTAATTGTCTCCAAGGCCAA
31._POUND_10_/B
CCAGCCTTCTAATTGTCTCCAAGGCCAA
32._POUND_10_/B
CCAGCCTTCTAATTGTCTCCAAGGCCAA
33._POUND_10_/B
CCAGCCTTCTAATTGTCTCCAAGGCCAA
34._GC-08-162-4-05
CCAGCCTTCTAATTGTCTCCAAGGCCAA
35._POUND_10_/B
CTAGGGCTCTAACCTTCCCTAAAACCAG
36._GC-08-163-4-06
CTAGGGCTCTAACCTTCCCTAAAACCAG
 1516171819202122232425262728
_Input profile
TTAAGGTTTTCGGGAACCAAGGTTCCCC
1._GC-01-115-6-12
TTAAGGTTTTCGGGAACCAAGGTTCCCC
2._GC-01-115-6-12
TTAAGGTTTTCGGGAACCAAGGTTCCCC
3._GC-01-115-6-12
TTAAGGTTTTCGGGAACCAAGGTTCCCC
4._GC-08-162-4-05
TTAAGGTTTTCGGGAACCAAGGTTCCCC
5._GC-08-163-4-06
TTAAGGTTTTCGGGAACCAAGGTTCCCC
6._GC-08-163-4-06
TTAAGGTTTTCGGGAACCAAGGTTCCCC
7._POUND_10_/B
TTAAGGTTTTCGGGAACCAAGGTTCCCC
8._POUND_10_/B
TTAAGGTTTTCGGGAACCAAGGTTCCCC
9._POUND_10_/B
TTAAGGTTTTCGGGAACCAAGGTTCCCC
10._POUND_10_/B
TTAAGGTTTTCGGGAACCAAGGTTCCCC
11._POUND_10_/B
TTAAGGTTTTCGGGAACCAAGGTTCCCC
12._POUND_10_/B
TTAAGGTTTTCGGGAACCAAGGTTCCCC
13._GC-01-115-6-12
TTAAGGTTTTCGGGAACCAAGGTTCCCC
14._POUND_10_/B
TTAAGGTTTTCGGGAACCAAGGTTCCCC
15._RUQ_1618
________TTCGGG__CCAAGGTTCCCC
16._RUQ_1618
TTAAGGTTTTCGGGAACCAAGGTTCCCC
17._GC-08-162-4-05
TTAACGCTCTCGGGAACTACGGGGCTAC
18._POUND_10_/B
TTAACGCTCTCGGGAACTACGGGGCTAC
19._GC-01-115-6-12
TTAACGCTCTCGGGAACTACGGGGCTAC
20._GC-01-115-6-12
TTAACGCTCTCGGGAACTACGGGGCTAC
21._GC-08-162-4-05
TTAACGCTCTCGGGAACTACGGGGCTAC
22._POUND_10_/B
TTAACGCTCTCGGGAACTACGGGGCTAC
23._GC-08-162-4-05
TTAACGCTCTCGGGAACTACGGGGCTAC
24._GC-08-162-4-05
TTAACGCTCTCGGGAACTACGGGGCTAC
25._GC-08-162-4-05
TTAACGCTCTCGGGAACTACGGGGCTAC
26._GC-08-162-4-05
TTAACGCTCTCGGGAACTACGGGGCTAC
27._POUND_10_/B
TTAACGCTCTCGGGAACTACGGGGCTAC
28._POUND_10_/B
TTAACGCTCTCGGGAACTACGGGGCTAC
29._POUND_10_/B
TTAACGCTCTCGGGAACTACGGGGCTAC
30._POUND_10_/B
TTAACGCTCTCGGGAACTACGGGGCTAC
31._POUND_10_/B
TTAACGCTCTCGGGAACTACGGGGCTAC
32._POUND_10_/B
TTAACGCTCTCGGGAACTACGGGGCTAC
33._POUND_10_/B
TTAACGCTCTCGGGAACTACGGGGCTAC
34._GC-08-162-4-05
TTAACGCTCTCGGGAACTACGGGGCTAC
35._POUND_10_/B
CTATCGCTCCCGGGAGTTAACGGTCTCC
36._GC-08-163-4-06
CTATCGCTCCCGGGAGTTAACGGTCTCC
 293031323334353637383940  
_Input profile
AAGGAACCGGCCAACCGGAATTGGX_XX_X
1._GC-01-115-6-12
AAGGAACCGGCCAACCGGAATTGGX_XX_X
2._GC-01-115-6-12
AAGGAACCGGCCAACCGGAATTGGX_XX_X
3._GC-01-115-6-12
AAGGAACCGGCCAACCGGAATTGGX_XX_X
4._GC-08-162-4-05
AAGGAACCGGCCAACCGGAATTGGX_XX_X
5._GC-08-163-4-06
AAGGAACCGGCCAACCGGAATTGGX_XX_X
6._GC-08-163-4-06
AAGGAACCGGCCAACCGGAATTGGX_XX_X
7._POUND_10_/B
AAGGAACCGGCCAACCGGAATTGGX_XX_X
8._POUND_10_/B
AAGGAACCGGCCAACCGGAATTGGX_XX_X
9._POUND_10_/B
AAGGAACCGGCCAACCGGAATTGGX_XX_X
10._POUND_10_/B
AAGGAACCGGCCAACCGGAATTGGX_XX_X
11._POUND_10_/B
AAGGAACCGGCCAACCGGAATTGGX_XX_X
12._POUND_10_/B
AAGGAACCGGCCAACCGGAATTGGX_XX_X
13._GC-01-115-6-12
AAGGAACCGGCCAACCGGAATTGGX_XX_X
14._POUND_10_/B
AAGGAACCGGCCAACCGGAATTGGX_XX_X
15._RUQ_1618
AA__AACCGGCCAACCGGAA____X_XX_X
16._RUQ_1618
AAGGAACCGGCCAACCGGAATTGGX_XX_X
17._GC-08-162-4-05
AGGGAACTAGCCCCCTGTACATGGX_XX_X
18._POUND_10_/B
AGGGAACTAGCCCCCTGTACATGGX_XX_X
19._GC-01-115-6-12
AGGGAACTAGCCCCCTGTACATGGX_XX_X
20._GC-01-115-6-12
AGGGAACTAGCCCCCTGTACATGGX_XX_X
21._GC-08-162-4-05
AGGGAACTAGCCCCCTGTACATGGX_XX_X
22._POUND_10_/B
AGGGAACTAGCCCCCTGTACATGGX_XX_X
23._GC-08-162-4-05
AGGGAACTAGCCCCCTGTACATGGX_XX_X
24._GC-08-162-4-05
AGGGAACTAGCCCCCTGTACATGGX_XX_X
25._GC-08-162-4-05
AGGGAACTAGCCCCCTGTACATGGX_XX_X
26._GC-08-162-4-05
AGGGAACTAGCCCCCTGTACATGGX_XX_X
27._POUND_10_/B
AGGGAACTAGCCCCCTGTACATGGX_XX_X
28._POUND_10_/B
AGGGAACTAGCCCCCTGTACATGGX_XX_X
29._POUND_10_/B
AGGGAACTAGCCCCCTGTACATGGX_XX_X
30._POUND_10_/B
AGGGAACTAGCCCCCTGTACATGGX_XX_X
31._POUND_10_/B
AGGGAACTAGCCCCCTGTACATGGX_XX_X
32._POUND_10_/B
AGGGAACTAGCCCCCTGTACATGGX_XX_X
33._POUND_10_/B
AGGG__CTAGCCCCCTGTACATGGX_XX_X
34._GC-08-162-4-05
AGGG__CTAGCCCCCTGTACATGGX_XX_X
35._POUND_10_/B
AAGGAACCAACCACCTGTCCATCGX_XX_X
36._GC-08-163-4-06
AAGGAACCAACCACCTGTCCATCGX_XX_X

Input profile: POUND_10_/B

 
International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B F429 T13
 Dapeng Zhang, 2016

1._POUND_10_/B GC-01-115-6-12

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP2
 Mars, 2018

2._POUND_10_/B GC-01-115-6-12

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP4
 Mars, 2018

3._POUND_10_/B GC-01-115-6-12

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11 > FP3
 Mars, 2018

4._POUND_10_/B GC-08-162-4-05

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

5._POUND_10_/B GC-08-163-4-06

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

6._POUND_10_/B GC-08-163-4-06

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

7._POUND_10_/B

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1612 1 > FP
 Dapeng Zhang, 2016

8._POUND_10_/B

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1612 11 > F
 Dapeng Zhang, 2016

9._POUND_10_/B

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1612 3 > FP
 Dapeng Zhang, 2016

10._POUND_10_/B

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8405 7
 Dapeng Zhang, 2016

11._POUND_10_/B

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8406 2
 Dapeng Zhang, 2016

12._POUND_10_/B

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8406 10
 Dapeng Zhang, 2016

13._POUND_10_/B GC-01-115-6-12

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

14._POUND_10_/B

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1612 9
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

15._POUND_10_/B RUQ_1618

identical
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

16._POUND_10_/B RUQ_1618

98.8 %
40 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

17._POUND_10_/B GC-08-162-4-05

65 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

18._POUND_10_/B

65 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8405 10
 Dapeng Zhang, 2016

19._POUND_10_/B GC-01-115-6-12

65 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP1
 Mars, 2018

20._POUND_10_/B GC-01-115-6-12

65 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

21._POUND_10_/B GC-08-162-4-05

65 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

22._POUND_10_/B

65 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8405 8
 Dapeng Zhang, 2016

23._POUND_10_/B GC-08-162-4-05

65 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

24._POUND_10_/B GC-08-162-4-05

65 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

25._POUND_10_/B GC-08-162-4-05

65 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

26._POUND_10_/B GC-08-162-4-05

65 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

27._POUND_10_/B

65 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8405 6
 Dapeng Zhang, 2016

28._POUND_10_/B

65 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1612 10
 Dapeng Zhang, 2016

29._POUND_10_/B

65 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1612 2 > FP
 Dapeng Zhang, 2016

30._POUND_10_/B

65 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8405 2
 Dapeng Zhang, 2016

31._POUND_10_/B

65 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8405 4
 Dapeng Zhang, 2016

32._POUND_10_/B

65 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8405 5
 Dapeng Zhang, 2016

33._POUND_10_/B

64.1 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8405 11
 Dapeng Zhang, 2016

34._POUND_10_/B GC-08-162-4-05

64.1 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

35._POUND_10_/B

58.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8406 7
 Dapeng Zhang, 2016

36._POUND_10_/B GC-08-163-4-06

58.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP998 15TcSNP994
16TcSNP953 17TcSNP929 18TcSNP917 19TcSNP891 20TcSNP872
21TcSNP723 22TcSNP645 23TcSNP619 24TcSNP591 25TcSNP577
26TcSNP560 27TcSNP534 28TcSNP529 29TcSNP469 30TcSNP429
31TcSNP372 32TcSNP242 33TcSNP230 34TcSNP226 35TcSNP193
36TcSNP151 37TcSNP150 38TcSNP144 39TcSNP32 40TcSNP25