SNP Profiles of PA 56 [PER]   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
CTAGGGCTTTACCCTTCCCCAAGGCCAG
1._PA_72_[PER]___
CTAGGGCTTTACCCTTCCCCAAGGCCAG
2._PA_72_[PER]___
CTAGGGCTTTACCCTTCCCCAAGGCCAG
3._PA_72_[PER]___
CTAGGGCTTTACCCTTCCCCAAGGCCAG
4._PA_72_[PER]___
CTAGGGCTTTACCCTTCCCCAAGGCCAG
5._PA_72_[PER]___
CTAGGGCTTTACCCTTCCCCAAGGCCAG
6._PA_72_[PER]___
CTAGGGCTTTACCCTTCCCCAAGGCCAG
7._PA_72_[PER]___
CTAGGGCTTTACCCTTCCCCAAGGCCAG
8._PA_72_[PER]___
CTAGGGCTTTACCCTTCCCCAAGGCCAG
9._PA_72_[PER]___
CTAGGGCTTTACCCTTCCCCAAGGCCAG
10._PA_72_[PER]___
CTAGGGCTTTACCCTTCCCCAAGGCCAG
11._PA_72_[PER]___
CTAGGGCTTTACCCTTCCCCAAGGCCAG
12._PA_72_[PER]___
CTAGGGCTTTACCCTTCCCCAAGGCCAG
13._PA_72_[PER]___
CTAGGGCTTTACCCTTCCCCAAGGCCAG
14._PA_72_[PER]___
CTAGGGCTTTACCCTTCCCCAAGGCCAG
15._PA_72_[PER]___
CTAGGGCTTTACCCTTCCCCAAGGCCAG
16._PA_72_[PER]___
CTAGGGCTTTACCCTTCCCCAAGGCCAG
17._PA_72_[PER]___
CTAGGGCTTTACCCTTCCCCAAGGCCAG
18._PA_72_[PER]___
CTAGGGCTTTACCCTTCCCCAAGGCCAG
19._PA_72_[PER]___
CTAGGGCTTTACCCTTCCCCAAGGCCAG
20._PA_72_[PER]___
CTAGGGCTTTACCCTTCCCCAAGGCCAG
21._PA_72_[PER]___
CTAGGGCTTTACCCTTCCCCAAGGCCAG
22._PA_72_[PER]___
AGAGCCAGAAACGGAA____AAGGGGAG
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
CTAAGGCTCCGGGGAATTCCCGGTCTAC
1._PA_72_[PER]___
CTAAGGCTCCGGGGAATTCCCGGTCTAC
2._PA_72_[PER]___
CTAAGGCTCCGGGGAATTCCCGGTCTAC
3._PA_72_[PER]___
CTAAGGCTCCGGGGAATTCCCGGTCTAC
4._PA_72_[PER]___
CTAAGGCTCCGGGGAATTCCCGGTCTAC
5._PA_72_[PER]___
CTAAGGCTCCGGGGAATTCCCGGTCTAC
6._PA_72_[PER]___
CTAAGGCTCCGGGGAATTCCCGGTCTAC
7._PA_72_[PER]___
CTAAGGCTCCGGGGAATTCCCGGTCTAC
8._PA_72_[PER]___
CTAAGGCTCCGGGGAATTCCCGGTCTAC
9._PA_72_[PER]___
CTAAGGCTCCGGGGAATTCCCGGTCTAC
10._PA_72_[PER]___
CTAAGGCTCCGGGGAATTCCCGGTCTAC
11._PA_72_[PER]___
CTAAGGCTCCGGGGAATTCCCGGTCTAC
12._PA_72_[PER]___
CTAAGGCTCCGGGGAATTCCCGGTCTAC
13._PA_72_[PER]___
CTAAGGCTCCGGGGAATTCCCGGTCTAC
14._PA_72_[PER]___
CTAAGGCTCCGGGGAATTCCCGGTCTAC
15._PA_72_[PER]___
CTAAGGCTCCGGGGAATTCCCGGTCTAC
16._PA_72_[PER]___
CTAAGGCTCCGGGGAATTCCCGGTCTAC
17._PA_72_[PER]___
CTAAGGCTCCGGGGAATTCCCGGTCTAC
18._PA_72_[PER]___
CTAAGGCTCCGGGGAATTCCCGGTCTAC
19._PA_72_[PER]___
CTAAGGCTCCGGGGAATTCCCGGTCTAC
20._PA_72_[PER]___
CTAAGGCTCCGGGGAATTCCCGGTCTAC
21._PA_72_[PER]___
CTAAGGCTCCGG__AATTCCCGGTCTAC
22._PA_72_[PER]___
AGAAGGAGGGCCCC__AACCCGAC__AC
 29 30 31 32 33 34 35 36 37 38 39 40   
_Input profile
AAGGAACCAGCCAACCGTACAAGGX_XX_X
1._PA_72_[PER]___
AAGGAACCAGCCAACCGTACAAGGX_XX_X
2._PA_72_[PER]___
AAGGAACCAGCCAACCGTACAAGGX_XX_X
3._PA_72_[PER]___
AAGGAACCAGCCAACCGTACAAGGX_XX_X
4._PA_72_[PER]___
AAGGAACCAGCCAACCGTACAAGGX_XX_X
5._PA_72_[PER]___
AAGGAACCAGCCAACCGTACAAGGX_XX_X
6._PA_72_[PER]___
AAGGAACCAGCCAACCGTACAAGGX_XX_X
7._PA_72_[PER]___
AAGGAACCAGCCAACCGTACAAGGX_XX_X
8._PA_72_[PER]___
AAGGAACCAGCCAACCGTACAAGGX_XX_X
9._PA_72_[PER]___
AAGGAACCAGCCAACCGTACAAGGX_XX_X
10._PA_72_[PER]___
AAGGAACCAGCCAACCGTACAAGGX_XX_X
11._PA_72_[PER]___
AAGGAACCAGCCAACCGTACAAGGX_XX_X
12._PA_72_[PER]___
AAGGAACCAGCCAACCGTACAAGGX_XX_X
13._PA_72_[PER]___
AAGGAACCAGCCAACCGTACAAGGX_XX_X
14._PA_72_[PER]___
AAGGAACCAGCCAACCGTACAAGGX_XX_X
15._PA_72_[PER]___
AAGGAACCAGCCAACCGTACAAGGX_XX_X
16._PA_72_[PER]___
AAGGAACCAGCCAACCGTACAAGGX_XX_X
17._PA_72_[PER]___
AAGGAACCAGCCAACCGTACAAGGX_XX_X
18._PA_72_[PER]___
AAGGAACCAGCCAACCGTACAAGGX_XX_X
19._PA_72_[PER]___
AAGGAACCAGCCAACCGTACAAGGX_XX_X
20._PA_72_[PER]___
AAGGAACCAGCCACCCGTACAAGGX_XX_X
21._PA_72_[PER]___
AAGGAACCAG__ACCCGTACAAGGX_XX_X
22._PA_72_[PER]___
__GGAAGGAGGGACGGACACAAGGX_XX_X

Input profile: PA_72_[PER]

 
Mars Center for Cocoa Science, Brazil
Location: 8162 6
 Dapeng Zhang, 2016

1._PA_72_[PER] GC-08-051-1-62

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

2._PA_72_[PER] GC-08-051-1-62

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

3._PA_72_[PER] GC-08-051-1-62

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

4._PA_72_[PER] GC-08-051-1-62

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7 > FP3
 Mars, 2018

5._PA_72_[PER] GC-08-051-1-62

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

6._PA_72_[PER] GC-08-051-1-62

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

7._PA_72_[PER] GC-08-051-1-62

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP2
 Mars, 2018

8._PA_72_[PER] GC-08-051-1-62

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

9._PA_72_[PER] GC-08-051-1-62

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

10._PA_72_[PER] GC-08-051-1-62

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

11._PA_72_[PER]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8162 7 > FP
 Dapeng Zhang, 2016

12._PA_72_[PER]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8162 4 > FP
 Dapeng Zhang, 2016

13._PA_72_[PER]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8162 1 > FP
 Dapeng Zhang, 2016

14._PA_72_[PER]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8162 10
 Dapeng Zhang, 2016

15._PA_72_[PER]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8162 9
 Dapeng Zhang, 2016

16._PA_72_[PER]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8162 8
 Dapeng Zhang, 2016

17._PA_72_[PER]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8162 5
 Dapeng Zhang, 2016

18._PA_72_[PER]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8162 3
 Dapeng Zhang, 2016

19._PA_72_[PER]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8162 2
 Dapeng Zhang, 2016

20._PA_72_[PER]

98.8 %
40 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D 633
 Dapeng Zhang, 2016

21._PA_72_[PER]

98.7 %
38 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: MARPER D 633
 Dapeng Zhang, 2014

22._PA_72_[PER] GC-08-51-1-62

47.1 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 8, Block: 1, Rep: 62, Tree: 2
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP998 15TcSNP994
16TcSNP953 17TcSNP929 18TcSNP917 19TcSNP891 20TcSNP872
21TcSNP723 22TcSNP645 23TcSNP619 24TcSNP591 25TcSNP577
26TcSNP560 27TcSNP534 28TcSNP529 29TcSNP469 30TcSNP429
31TcSNP372 32TcSNP242 33TcSNP230 34TcSNP226 35TcSNP193
36TcSNP151 37TcSNP150 38TcSNP144 39TcSNP32 40TcSNP25