SNP Profiles of PA 70 [PER] View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	TT	AA	GG	CT	TT	AA	CC	TT	CT	TT	AA	AA	TT	AG
1._GC-04-053-3-17	TT	AA	GG	CT	TT	AA	CC	TT	CT	TT	AA	AA	TT	AG
2._RUQ_33	__	AG	GG	CT	__	__	__	TT	__	__	__	__	CC	AG
3._PA_70_[PER]	CC	AG	GG	CT	TT	AC	CC	TT	CC	__	AA	AG	CC	AG
4._PA_70_[PER]	CC	AG	GG	CT	TT	AC	CC	TT	CC	CC	AA	AG	CC	AG
5._GC-04-053-3-17	CC	AG	GG	CT	TT	AC	CC	TT	CC	CC	AA	AG	CC	AG
6._RUQ_33	CC	AG	GG	CT	TT	AC	CC	TT	CC	CC	AA	AG	CC	AG
7._PA70[PER]	__	__	CC	__	__	__	__	__	__	__	__	__	CC	__
8._RUQ_33	__	__	GG	__	__	__	__	TT	__	CC	__	AG	__	AG
9._GC-04-53-3-17	GG	AG	CC	AG	AA	AC	GG	AA	__	__	AA	AG	GG	AG
10._RUQ_33	GG	AG	CC	AG	AA	AC	GG	AA	__	__	AA	AG	GG	AG
11._MITC-000025	GG	AG	CC	AG	AA	AC	GG	AA	__	__	AA	AG	GG	AG
12._MITC-000026	GG	AG	CC	AG	AA	AC	GG	AA	__	__	AA	AG	GG	AG
13._PA_70_[PER]_Fld#_185_Plt#_1	AG	AG	CG	AG	AA	CC	AG	AA	__	__	AA	GG	GG	AG

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	TT	AA	GG	TT	CC	CG	GT	GG	TT	AC	CC	TT	TT	CC
1._GC-04-053-3-17	TT	AA	GG	TT	CC	CG	GT	GG	TT	AC	CC	TT	TT	CC
2._RUQ_33	__	__	__	__	CC	GG	GG	__	TT	AC	CG	GG	TT	AA
3._PA_70_[PER]	CC	AA	CG	CT	CC	GG	GG	AA	TT	AC	CG	GG	TT	AA
4._PA_70_[PER]	CC	AA	CG	CT	CC	GG	GG	AG	TT	AC	CG	GG	TT	AA
5._GC-04-053-3-17	CC	AA	CG	CT	CC	GG	GG	AG	TT	AC	CG	GG	TT	AA
6._RUQ_33	CC	AA	CG	CT	CC	GG	GG	AA	TT	AC	CG	GG	TT	AA
7._PA70[PER]	CC	__	__	__	CC	CC	__	__	__	AC	CG	__	__	__
8._RUQ_33	__	__	__	__	__	GG	GG	AA	__	AC	CG	__	__	AA
9._GC-04-53-3-17	GG	AA	CG	AG	GG	CC	CC	__	AA	AC	CG	CC	__	AA
10._RUQ_33	GG	AA	CG	AG	GG	CC	CC	__	AA	AC	CG	CC	__	AA
11._MITC-000025	GG	AA	CG	AG	GG	CC	CC	__	AA	AC	CG	CC	__	AA
12._MITC-000026	GG	AA	CG	AG	GG	CC	CC	__	AA	AC	CG	CC	__	AA
13._PA_70_[PER]_Fld#_185_Plt#_1	GG	AA	CC	GG	GG	CC	CC	__	AA	CC	GG	__	__	AA

	29	30	31	32	33	34	35	36	37	38	39	40
_Input profile	AG	GG	AT	CT	AG	CG	AA	CC	GT	AA	AT	GG	X_X	X_X
1._GC-04-053-3-17	AG	GG	AT	CT	AG	CG	AA	CC	GT	AA	AT	GG	X_X	X_X
2._RUQ_33	AA	__	AA	CC	AG	CC	AA	CC	GG	AA	__	__	X_X	X_X
3._PA_70_[PER]	AA	GG	AA	CC	AG	__	AA	CC	GG	AA	AT	GG	X_X	X_X
4._PA_70_[PER]	AA	GG	AA	CC	AG	CC	AA	CC	GG	AA	AT	GG	X_X	X_X
5._GC-04-053-3-17	AA	GG	AA	CC	AG	CC	AA	CC	GG	AA	AT	GG	X_X	X_X
6._RUQ_33	AA	GG	AA	CC	AG	CC	AA	CC	GG	AA	AT	GG	X_X	X_X
7._PA70[PER]	__	__	AA	__	AG	GG	AA	CC	__	AA	__	__	X_X	X_X
8._RUQ_33	__	__	__	__	AG	__	__	__	__	AA	__	__	X_X	X_X
9._GC-04-53-3-17	__	GG	AA	GG	AG	GG	AA	GG	CC	AA	AT	GG	X_X	X_X
10._RUQ_33	__	GG	AA	GG	AG	GG	AA	GG	CC	AA	AT	GG	X_X	X_X
11._MITC-000025	__	GG	AA	GG	AG	GG	AA	GG	CC	AA	AT	GG	X_X	X_X
12._MITC-000026	__	GG	AA	GG	AG	GG	AA	GG	CC	AA	AT	GG	X_X	X_X
13._PA_70_[PER]_Fld#_185_Plt#_1	__	GG	AA	GG	AG	GG	AC	AG	CC	AA	AT	GG	X_X	X_X

Input profile: PA_70_[PER]

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Mars Center for Cocoa Science, Brazil

Location: 4317 2 > FP

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

1._PA_70_[PER] GC-04-053-3-17

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2 > FP1 (roxo)

2._PA_70_[PER] RUQ_33

68.8 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

3._PA_70_[PER]

67.1 %
38 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: MARPER D634

Dapeng Zhang, 2016

4._PA_70_[PER]

66.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 4317 6 > FP

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

5._PA_70_[PER] GC-04-053-3-17

66.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: 6 > FP2 (verde)

6._PA_70_[PER] RUQ_33

65 %
40 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

7._PA_70_[PER] PA70[PER]

61.5 %
13 shared markers

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Center for Forestry Research and Technology Transfer, Vietnam

Location: CEFORTT

Jocelyn De Wever et al., 2019

8._PA_70_[PER] RUQ_33

61.5 %
13 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

9._PA_70_[PER] GC-04-53-3-17

40 %
35 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Field: 4, Block: 3, Rep: 17, Tree: 6 > FP2 (verde)

Notes: MCCS_Structure_refs_above_0.9membership

10._PA_70_[PER] RUQ_33

40 %
35 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

11._PA_70_[PER] MITC-000025

40 %
35 shared markers

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USDA-SHRS, United States of America

12._PA_70_[PER] MITC-000026

40 %
35 shared markers

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USDA-SHRS, United States of America

13._PA_70_[PER] PA_70_[PER]_Fld#_185_Plt#_1

33.8 %
34 shared markers

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USDA-TARS, United States of America

Location: Field: 185, Tree: 1

Key to SNP Markers

Key to SNP Markers

1	TcSNP1520	2	TcSNP1484	3	TcSNP1458	4	TcSNP1442	5	TcSNP1414
6	TcSNP1350	7	TcSNP1270	8	TcSNP1253	9	TcSNP1165	10	TcSNP1144
11	TcSNP1075	12	TcSNP1062	13	TcSNP1060	14	TcSNP998	15	TcSNP994
16	TcSNP953	17	TcSNP929	18	TcSNP917	19	TcSNP891	20	TcSNP872
21	TcSNP723	22	TcSNP645	23	TcSNP619	24	TcSNP591	25	TcSNP577
26	TcSNP560	27	TcSNP534	28	TcSNP529	29	TcSNP469	30	TcSNP429
31	TcSNP372	32	TcSNP242	33	TcSNP230	34	TcSNP226	35	TcSNP193
36	TcSNP151	37	TcSNP150	38	TcSNP144	39	TcSNP32	40	TcSNP25