SNP Profiles of PA 7   View Data

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 Key

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_Input profile
CTAGCGCTTTCCCTTTCCCCAAGGCCAG
1._GC-04-030-2-12
CTAGCGCTTTCCCTTTCCCCAAGGCCAG
2._GC-04-030-2-12
CTAGCGCTTTCCCTTTCCCCAAGGCCAG
3._GC-04-030-2-12
CTAGCGCTTTCCCTTTCCCCAAGGCCAG
4._GC-04-030-2-12
CTAGCGCTTTCCCTTTCCCCAAGGCCAG
5._GC-04-030-2-12
CTAGCGCTTTCCCTTTCCCCAAGGCCAG
6._PA_7_[PER]
CTAGCGCTTTCCCTTTCCCCAAGGCCAG
7._PA_7_[PER]
CTAGCGCTTTCCCTTTCCCCAAGGCCAG
8._PA_7_[PER]
CTAGCGCTTTCCCTTTCCCCAAGGCCAG
9._PA_7_[PER]
CTAGCGCTTTCCCTTTCCCCAAGGCCAG
10._PA_7_[PER]
CTAGCGCTTTCCCTTTCCCCAAGGCCAG
11._PA_7_[PER]
CTAGCGCTTTCCCTTTCCCCAAGGCCAG
12._PA_7_[PER]
CTAGCGCTTTCCCTTTCCCCAAGGCCAG
13._RUQ_113
__AGCGCT______TT________CCAG
14._RUQ_113
CTAGCGCTTTCCCTTTCCCCAAGGCCAG
15._RUQ_113
____CG________TT__CC__GG__AG
16._RUQ_113
AGAGCGAGAACCAGAA____AAGGGGAG
 1516171819202122232425262728
_Input profile
CCAACCCCCCGGGGAGTTCCGGGTCCAA
1._GC-04-030-2-12
CCAACCCCCCGGGGAGTTCCGGGTCCAA
2._GC-04-030-2-12
CCAACCCCCCGGGGAGTTCCGGGTCCAA
3._GC-04-030-2-12
CCAACCCCCCGGGGAGTTCCGGGTCCAA
4._GC-04-030-2-12
CCAACCCCCCGGGGAGTTCCGGGTCCAA
5._GC-04-030-2-12
CCAACCCCCCGGGGAGTTCCGGGTCCAA
6._PA_7_[PER]
CCAACCCCCCGGGGAGTTCCGGGTCCAA
7._PA_7_[PER]
CCAACCCCCCGGGGAGTTCCGGGTCCAA
8._PA_7_[PER]
CCAACCCCCCGGGGAGTTCCGGGTCCAA
9._PA_7_[PER]
CCAACCCCCCGGGGAGTTCCGGGTCCAA
10._PA_7_[PER]
CCAACCCCCCGGGGAGTTCCGGGTCCAA
11._PA_7_[PER]
CCAACCCCCCGGGGAGTTCCGGGTCCAA
12._PA_7_[PER]
CCAACCCCCCGGGGAGTTCCGGGTCCAA
13._RUQ_113
________CCGGGG__TTCCGGGTCCAA
14._RUQ_113
CCAACCCCCCGGGGAATTCCGGGTCCAA
15._RUQ_113
__________GGGGAA__CCGG____AA
16._RUQ_113
GGAACCGGGGCCCC__AACCGGAC__AA
 293031323334353637383940  
_Input profile
AAGGAACCAGCCAACTGGAAATGGX_XX_X
1._GC-04-030-2-12
AAGGAACCAGCCAACTGGAAATGGX_XX_X
2._GC-04-030-2-12
AAGGAACCAGCCAACTGGAAATGGX_XX_X
3._GC-04-030-2-12
AAGGAACCAGCCAACTGGAAATGGX_XX_X
4._GC-04-030-2-12
AAGGAACCAGCCAACTGGAAATGGX_XX_X
5._GC-04-030-2-12
AAGGAACCAGCCAACTGGAAATGGX_XX_X
6._PA_7_[PER]
AAGGAACCAGCCAACTGGAAATGGX_XX_X
7._PA_7_[PER]
AAGGAACCAGCCAACTGGAAATGGX_XX_X
8._PA_7_[PER]
AAGGAACCAGCCAACTGGAAATGGX_XX_X
9._PA_7_[PER]
AAGGAACCAGCCAACTGGAAATGGX_XX_X
10._PA_7_[PER]
AAGGAACCAGCCACCTGGAAATGGX_XX_X
11._PA_7_[PER]
AAGGAACCAGCCACCTGGAAATGGX_XX_X
12._PA_7_[PER]
AAGGAACCAGCCACCTGGAAATGGX_XX_X
13._RUQ_113
AA__AACCAGCCACCTGGAA____X_XX_X
14._RUQ_113
AAGGAACCAGCCACCTGGAAATGGX_XX_X
15._RUQ_113
________AG________AA____X_XX_X
16._RUQ_113
__GGAAGGAGGGACAGCCAAATGGX_XX_X

Input profile: PA_7_[PER]

 
Mars Center for Cocoa Science, Brazil
Location: 4212 7 > FP
 Dapeng Zhang, 2016

1._PA_7_[PER] GC-04-030-2-12

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

2._PA_7_[PER] GC-04-030-2-12

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7 > FP2
 Mars, 2018

3._PA_7_[PER] GC-04-030-2-12

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP3
 Mars, 2018

4._PA_7_[PER] GC-04-030-2-12

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP4
 Mars, 2018

5._PA_7_[PER] GC-04-030-2-12

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

6._PA_7_[PER]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4212 3 > FP
 Dapeng Zhang, 2016

7._PA_7_[PER]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4212 8
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

8._PA_7_[PER]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4212 1 > FP
 Dapeng Zhang, 2016

9._PA_7_[PER]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4212 2 > FP
 Dapeng Zhang, 2016

10._PA_7_[PER]

98.8 %
40 shared markers

Cocoa Research Institute of Ghana (CRIG), Ghana
Location: P61 842
 Dapeng Zhang, 2016

11._PA_7_[PER]

98.8 %
40 shared markers

Indonesian Coffee and Cocoa Research Institute (ICCRI), Indonesia
Location: KW 185 I-033
 Dapeng Zhang, 2016

12._PA_7_[PER]

98.8 %
40 shared markers

Malaysian Cocoa Board (MCB), Malaysia
Location: Row 2 C0214 27
 Dapeng Zhang, 2016

13._PA_7_[PER] RUQ_113

97.9 %
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

14._PA_7_[PER] RUQ_113

97.5 %
40 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

15._PA_7_[PER] RUQ_113

96.2 %
13 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

16._PA_7_[PER] RUQ_113

50 %
35 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP998 15TcSNP994
16TcSNP953 17TcSNP929 18TcSNP917 19TcSNP891 20TcSNP872
21TcSNP723 22TcSNP645 23TcSNP619 24TcSNP591 25TcSNP577
26TcSNP560 27TcSNP534 28TcSNP529 29TcSNP469 30TcSNP429
31TcSNP372 32TcSNP242 33TcSNP230 34TcSNP226 35TcSNP193
36TcSNP151 37TcSNP150 38TcSNP144 39TcSNP32 40TcSNP25