SNP Profiles of PA7 [PER] View Data

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_Input profile	CT	AG	CG	CT	TT	CC	CT	TT	CC	CC	AA	GG	CC	AG
1._RUQ_113	__	AG	CG	CT	__	__	__	TT	__	__	__	__	CC	AG
2._RUQ_113	__	__	CG	__	__	__	__	TT	__	CC	__	GG	__	AG
3._PA_7_[PER]	CT	AG	CG	CT	TT	CC	CT	TT	CC	CC	AA	GG	CC	AG
4._PA_7_[PER]	CT	AG	CG	CT	TT	CC	CT	TT	CC	CC	AA	GG	CC	AG
5._PA_7_[PER]	CT	AG	CG	CT	TT	CC	CT	TT	CC	CC	AA	GG	CC	AG
6._GC-04-030-2-12	CT	AG	CG	CT	TT	CC	CT	TT	CC	CC	AA	GG	CC	AG
7._GC-04-030-2-12	CT	AG	CG	CT	TT	CC	CT	TT	CC	CC	AA	GG	CC	AG
8._GC-04-030-2-12	CT	AG	CG	CT	TT	CC	CT	TT	CC	CC	AA	GG	CC	AG
9._GC-04-030-2-12	CT	AG	CG	CT	TT	CC	CT	TT	CC	CC	AA	GG	CC	AG
10._GC-04-030-2-12	CT	AG	CG	CT	TT	CC	CT	TT	CC	CC	AA	GG	CC	AG
11._PA_7_[PER]	CT	AG	CG	CT	TT	CC	CT	TT	CC	CC	AA	GG	CC	AG
12._PA_7_[PER]	CT	AG	CG	CT	TT	CC	CT	TT	CC	CC	AA	GG	CC	AG
13._PA_7_[PER]	CT	AG	CG	CT	TT	CC	CT	TT	CC	CC	AA	GG	CC	AG
14._PA_7_[PER]	CT	AG	CG	CT	TT	CC	CT	TT	CC	CC	AA	GG	CC	AG
15._PA_7_[PER]	CT	AG	CG	CT	TT	CC	CT	TT	CC	CC	AA	GG	CC	AG
16._RUQ_113	AG	AG	CG	AG	AA	CC	AG	AA	__	__	AA	GG	GG	AG

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	CC	AA	CC	CC	CC	GG	GG	AA	TT	CC	GG	GT	CC	AA
1._RUQ_113	__	__	__	__	CC	GG	GG	__	TT	CC	GG	GT	CC	AA
2._RUQ_113	__	__	__	__	__	GG	GG	AA	__	CC	GG	__	__	AA
3._PA_7_[PER]	CC	AA	CC	CC	CC	GG	GG	AG	TT	CC	GG	GT	CC	AA
4._PA_7_[PER]	CC	AA	CC	CC	CC	GG	GG	AG	TT	CC	GG	GT	CC	AA
5._PA_7_[PER]	CC	AA	CC	CC	CC	GG	GG	AG	TT	CC	GG	GT	CC	AA
6._GC-04-030-2-12	CC	AA	CC	CC	CC	GG	GG	AG	TT	CC	GG	GT	CC	AA
7._GC-04-030-2-12	CC	AA	CC	CC	CC	GG	GG	AG	TT	CC	GG	GT	CC	AA
8._GC-04-030-2-12	CC	AA	CC	CC	CC	GG	GG	AG	TT	CC	GG	GT	CC	AA
9._GC-04-030-2-12	CC	AA	CC	CC	CC	GG	GG	AG	TT	CC	GG	GT	CC	AA
10._GC-04-030-2-12	CC	AA	CC	CC	CC	GG	GG	AG	TT	CC	GG	GT	CC	AA
11._PA_7_[PER]	CC	AA	CC	CC	CC	GG	GG	AG	TT	CC	GG	GT	CC	AA
12._PA_7_[PER]	CC	AA	CC	CC	CC	GG	GG	AG	TT	CC	GG	GT	CC	AA
13._PA_7_[PER]	CC	AA	CC	CC	CC	GG	GG	AG	TT	CC	GG	GT	CC	AA
14._PA_7_[PER]	CC	AA	CC	CC	CC	GG	GG	AG	TT	CC	GG	GT	CC	AA
15._PA_7_[PER]	CC	AA	CC	CC	CC	GG	GG	AG	TT	CC	GG	GT	CC	AA
16._RUQ_113	GG	AA	CC	GG	GG	CC	CC	__	AA	CC	GG	AC	__	AA

	29	30	31	32	33	34	35	36	37	38	39	40
_Input profile	AA	GG	AA	CC	AG	CC	AC	CT	GG	AA	AT	GG	X_X	X_X
1._RUQ_113	AA	__	AA	CC	AG	CC	AC	CT	GG	AA	__	__	X_X	X_X
2._RUQ_113	__	__	__	__	AG	__	__	__	__	AA	__	__	X_X	X_X
3._PA_7_[PER]	AA	GG	AA	CC	AG	CC	AC	CT	GG	AA	AT	GG	X_X	X_X
4._PA_7_[PER]	AA	GG	AA	CC	AG	CC	AC	CT	GG	AA	AT	GG	X_X	X_X
5._PA_7_[PER]	AA	GG	AA	CC	AG	CC	AC	CT	GG	AA	AT	GG	X_X	X_X
6._GC-04-030-2-12	AA	GG	AA	CC	AG	CC	AA	CT	GG	AA	AT	GG	X_X	X_X
7._GC-04-030-2-12	AA	GG	AA	CC	AG	CC	AA	CT	GG	AA	AT	GG	X_X	X_X
8._GC-04-030-2-12	AA	GG	AA	CC	AG	CC	AA	CT	GG	AA	AT	GG	X_X	X_X
9._GC-04-030-2-12	AA	GG	AA	CC	AG	CC	AA	CT	GG	AA	AT	GG	X_X	X_X
10._GC-04-030-2-12	AA	GG	AA	CC	AG	CC	AA	CT	GG	AA	AT	GG	X_X	X_X
11._PA_7_[PER]	AA	GG	AA	CC	AG	CC	AA	CT	GG	AA	AT	GG	X_X	X_X
12._PA_7_[PER]	AA	GG	AA	CC	AG	CC	AA	CT	GG	AA	AT	GG	X_X	X_X
13._PA_7_[PER]	AA	GG	AA	CC	AG	CC	AA	CT	GG	AA	AT	GG	X_X	X_X
14._PA_7_[PER]	AA	GG	AA	CC	AG	CC	AA	CT	GG	AA	AT	GG	X_X	X_X
15._PA_7_[PER]	AA	GG	AA	CC	AG	CC	AA	CT	GG	AA	AT	GG	X_X	X_X
16._RUQ_113	__	GG	AA	GG	AG	GG	AC	AG	CC	AA	AT	GG	X_X	X_X

Input profile: PA_7_[PER] RUQ_113

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

1._PA_7_[PER] RUQ_113

identical
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

2._PA_7_[PER] RUQ_113

identical
13 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

Population Assignment:

3._PA_7_[PER]

98.8 %
40 shared markers

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Cocoa Research Institute of Ghana (CRIG), Ghana

Location: P61 842

Dapeng Zhang, 2016

4._PA_7_[PER]

98.8 %
40 shared markers

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Indonesian Coffee and Cocoa Research Institute (ICCRI), Indonesia

Location: KW 185 I-033

Dapeng Zhang, 2016

5._PA_7_[PER]

98.8 %
40 shared markers

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Malaysian Cocoa Board (MCB), Malaysia

Location: Row 2 C0214 27

Dapeng Zhang, 2016

6._PA_7_[PER] GC-04-030-2-12

97.5 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 8

Notes: 8

7._PA_7_[PER] GC-04-030-2-12

97.5 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 7

Notes: 7 > FP2

8._PA_7_[PER] GC-04-030-2-12

97.5 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3 > FP3

9._PA_7_[PER] GC-04-030-2-12

97.5 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2 > FP4

10._PA_7_[PER] GC-04-030-2-12

97.5 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

11._PA_7_[PER]

97.5 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 4212 8

Dapeng Zhang, 2016

12._PA_7_[PER]

97.5 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 4212 1 > FP

Dapeng Zhang, 2016

13._PA_7_[PER]

97.5 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 4212 2 > FP

Dapeng Zhang, 2016

14._PA_7_[PER]

97.5 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 4212 3 > FP

Dapeng Zhang, 2016

15._PA_7_[PER]

97.5 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 4212 7 > FP

Dapeng Zhang, 2016

16._PA_7_[PER] RUQ_113

51.4 %
35 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

Key to SNP Markers

Key to SNP Markers

1	TcSNP1520	2	TcSNP1484	3	TcSNP1458	4	TcSNP1442	5	TcSNP1414
6	TcSNP1350	7	TcSNP1270	8	TcSNP1253	9	TcSNP1165	10	TcSNP1144
11	TcSNP1075	12	TcSNP1062	13	TcSNP1060	14	TcSNP998	15	TcSNP994
16	TcSNP953	17	TcSNP929	18	TcSNP917	19	TcSNP891	20	TcSNP872
21	TcSNP723	22	TcSNP645	23	TcSNP619	24	TcSNP591	25	TcSNP577
26	TcSNP560	27	TcSNP534	28	TcSNP529	29	TcSNP469	30	TcSNP429
31	TcSNP372	32	TcSNP242	33	TcSNP230	34	TcSNP226	35	TcSNP193
36	TcSNP151	37	TcSNP150	38	TcSNP144	39	TcSNP32	40	TcSNP25