SNP Profiles of PA 56 [PER] View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	CC	GG	CG	CT	TT	AC	CC	TT	CC	CC	AA	GG	CC	AG
1._NA	CC	GG	CG	CT	TT	AC	CC	TT	CC	CC	AA	GG	CC	AG
2._NA	CC	GG	CG	CT	TT	AC	CC	TT	CC	CC	AA	GG	CC	AG
3._NA	CC	GG	CG	CT	TT	AC	CC	TT	CC	CC	AA	GG	CC	AG
4._NA	CC	GG	CG	CT	TT	AC	CC	TT	CC	CC	AA	GG	CC	AG
5._PA_56_[PER]	CC	GG	CG	CT	TT	AC	CC	TT	CC	CC	AA	GG	CC	AG
6._PA_56_[PER]	CC	GG	CG	CT	TT	AC	CC	TT	CC	CC	AA	GG	CC	AG
7._PA_56_[PER]	CC	GG	CG	CT	TT	AC	CC	TT	CC	CC	AA	GG	CC	AG
8._NA	CC	GG	CG	CT	TT	AC	CC	TT	CC	CC	AA	GG	CC	AG
9._PA_56_[PER]	CC	GG	CG	CT	TT	AC	CC	TT	CC	CC	AA	GG	CC	AG
10._RUQ_32	__	GG	CG	CT	__	__	__	TT	__	__	__	__	CC	AG
11._RUQ_32	CC	GG	CG	CT	TT	AC	CC	TT	CC	CC	AA	GG	CC	AG
12._PA_56_[PER]	CC	GG	CG	CT	TT	AC	CC	TT	CC	CC	AA	GG	CC	AG
13._RUQ_32	__	__	CG	__	__	__	__	TT	__	CC	__	GG	__	AG
14._-	GG	GG	CG	AG	AA	AC	GG	AA	__	__	AA	GG	GG	AG

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	CT	AA	GG	CT	CC	GG	GG	GG	TT	CC	CG	GT	CT	AC
1._NA	CT	AA	GG	CT	CC	GG	GG	GG	TT	CC	CG	GT	CT	AC
2._NA	CT	AA	GG	CT	CC	GG	GG	GG	TT	CC	CG	GT	CT	AC
3._NA	CT	AA	GG	CT	CC	GG	GG	GG	TT	CC	CG	GT	CT	AC
4._NA	CT	AA	GG	CT	CC	GG	GG	GG	TT	CC	CG	GT	CT	AC
5._PA_56_[PER]	CT	AA	GG	CT	CC	GG	GG	GG	TT	CC	CG	GT	CT	AC
6._PA_56_[PER]	CT	AA	GG	CT	CC	GG	GG	GG	TT	CC	CG	GT	CT	AC
7._PA_56_[PER]	CT	AA	GG	CT	CC	GG	GG	GG	TT	CC	CG	GT	CT	AC
8._NA	CT	AA	GG	CT	CC	GG	GG	GG	TT	CC	CG	GT	CT	AC
9._PA_56_[PER]	CT	AA	GG	CT	CC	GG	GG	GG	TT	CC	CG	GT	CT	AC
10._RUQ_32	__	__	__	__	CC	GG	GG	__	TT	CC	CG	GT	CT	AC
11._RUQ_32	CT	AA	GG	CT	CC	GG	GG	AA	TT	CC	CG	GT	CT	AC
12._PA_56_[PER]	CT	AA	GG	CT	CC	GG	GG	AA	TT	CC	CG	GT	CT	AC
13._RUQ_32	__	__	__	__	__	GG	GG	AA	__	CC	CG	__	__	AA
14._-	AG	AA	GG	AG	GG	CC	CC	__	AA	CC	CG	AC	__	AC

	29	30	31	32	33	34	35	36	37	38	39	40
_Input profile	AA	GG	AA	CC	AG	CC	AA	CC	GG	CC	AA	GG	X_X	X_X
1._NA	AA	GG	AA	CC	AG	CC	AA	CC	GG	CC	AA	GG	X_X	X_X
2._NA	AA	GG	AA	CC	AG	CC	AA	CC	GG	CC	AA	GG	X_X	X_X
3._NA	AA	GG	AA	CC	AG	CC	AA	CC	GG	CC	AA	GG	X_X	X_X
4._NA	AA	GG	AA	CC	AG	CC	AA	CC	GG	CC	AA	GG	X_X	X_X
5._PA_56_[PER]	AA	GG	AA	CC	AG	CC	AA	CC	GG	CC	AA	GG	X_X	X_X
6._PA_56_[PER]	AA	GG	AA	CC	AG	CC	AA	CC	GG	CC	AA	GG	X_X	X_X
7._PA_56_[PER]	AA	GG	AA	CC	AG	CC	AA	CC	GG	CC	AA	GG	X_X	X_X
8._NA	AA	GG	__	CC	AG	CC	AA	CC	GG	CC	AA	GG	X_X	X_X
9._PA_56_[PER]	AA	GG	__	CC	AG	CC	AA	CC	GG	CC	AA	GG	X_X	X_X
10._RUQ_32	AA	__	AA	CC	AG	CC	AC	CC	GG	CC	__	__	X_X	X_X
11._RUQ_32	AA	GG	AA	CC	AG	CC	AC	CC	GG	CC	AA	GG	X_X	X_X
12._PA_56_[PER]	AA	GG	AA	CC	AG	CC	AC	CC	GG	CC	AA	GG	X_X	X_X
13._RUQ_32	__	__	__	__	AG	__	__	__	__	CC	__	__	X_X	X_X
14._-	__	GG	AA	GG	AG	GG	AC	GG	CC	CC	AA	GG	X_X	X_X

Input profile: PA_56_[PER]

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Mars Center for Cocoa Science, Brazil

Location: 8176 2

Dapeng Zhang, 2016

1._PA_56_[PER] NA

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: Dead

2._PA_56_[PER] NA

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: Dead

3._PA_56_[PER] NA

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

4._PA_56_[PER] NA

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

5._PA_56_[PER]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8176 6

Dapeng Zhang, 2016

6._PA_56_[PER]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8176 4

Dapeng Zhang, 2016

7._PA_56_[PER]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8176 3

Dapeng Zhang, 2016

8._PA_56_[PER] NA

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1

9._PA_56_[PER]

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8176 1

Dapeng Zhang, 2016

10._PA_56_[PER] RUQ_32

97.9 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

11._PA_56_[PER] RUQ_32

96.3 %
40 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

12._PA_56_[PER]

96.3 %
40 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: Marper D 238

Dapeng Zhang, 2016

13._PA_56_[PER] RUQ_32

88.5 %
13 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

Population Assignment:

14._PA_56_[PER] -

50 %
35 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Field: 8, Block: 1, Rep: 76, Tree: 1

Notes: MCCS_Structure_refs_above_0.9membership

Key to SNP Markers

Key to SNP Markers

1	TcSNP1520	2	TcSNP1484	3	TcSNP1458	4	TcSNP1442	5	TcSNP1414
6	TcSNP1350	7	TcSNP1270	8	TcSNP1253	9	TcSNP1165	10	TcSNP1144
11	TcSNP1075	12	TcSNP1062	13	TcSNP1060	14	TcSNP998	15	TcSNP994
16	TcSNP953	17	TcSNP929	18	TcSNP917	19	TcSNP891	20	TcSNP872
21	TcSNP723	22	TcSNP645	23	TcSNP619	24	TcSNP591	25	TcSNP577
26	TcSNP560	27	TcSNP534	28	TcSNP529	29	TcSNP469	30	TcSNP429
31	TcSNP372	32	TcSNP242	33	TcSNP230	34	TcSNP226	35	TcSNP193
36	TcSNP151	37	TcSNP150	38	TcSNP144	39	TcSNP32	40	TcSNP25