SNP Profiles of MO 9   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
CCGGCGCTTTACCCTTCCCCAAGGCCAG
1._PA_56_[PER]___
CCGGCGCTTTACCCTTCCCCAAGGCCAG
2._PA_56_[PER]___
__GGCGCT______TT________CCAG
3._PA_56_[PER]___
CCGGCGCTTTACCCTTCCCCAAGGCCAG
4._PA_56_[PER]___
CCGGCGCTTTACCCTTCCCCAAGGCCAG
5._PA_56_[PER]___
CCGGCGCTTTACCCTTCCCCAAGGCCAG
6._PA_56_[PER]___
CCGGCGCTTTACCCTTCCCCAAGGCCAG
7._PA_56_[PER]___
CCGGCGCTTTACCCTTCCCCAAGGCCAG
8._PA_56_[PER]___
CCGGCGCTTTACCCTTCCCCAAGGCCAG
9._PA_56_[PER]___
CCGGCGCTTTACCCTTCCCCAAGGCCAG
10._PA_56_[PER]___
CCGGCGCTTTACCCTTCCCCAAGGCCAG
11._PA_56_[PER]___
____CG________TT__CC__GG__AG
12._PA_56_[PER]___
CCGGCGCTTTACCCTTCCCCAAGGCCAG
13._PA_56_[PER]___
CCGGCGCTTTACCCTTCCCCAAGGCCAG
14._PA_56_[PER]___
GGGGCGAGAAACGGAA____AAGGGGAG
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
CTAAGGCTCCGGGGAATTCCCGGTCTAC
1._PA_56_[PER]___
CTAAGGCTCCGGGGAATTCCCGGTCTAC
2._PA_56_[PER]___
________CCGGGG__TTCCCGGTCTAC
3._PA_56_[PER]___
CTAAGGCTCCGGGGGGTTCCCGGTCTAC
4._PA_56_[PER]___
CTAAGGCTCCGGGGGGTTCCCGGTCTAC
5._PA_56_[PER]___
CTAAGGCTCCGGGGGGTTCCCGGTCTAC
6._PA_56_[PER]___
CTAAGGCTCCGGGGGGTTCCCGGTCTAC
7._PA_56_[PER]___
CTAAGGCTCCGGGGGGTTCCCGGTCTAC
8._PA_56_[PER]___
CTAAGGCTCCGGGGGGTTCCCGGTCTAC
9._PA_56_[PER]___
CTAAGGCTCCGGGGGGTTCCCGGTCTAC
10._PA_56_[PER]___
CTAAGGCTCCGGGGGGTTCCCGGTCTAC
11._PA_56_[PER]___
__________GGGGAA__CCCG____AA
12._PA_56_[PER]___
CTAAGGCTCCGGGGGGTTCCCGGTCTAC
13._PA_56_[PER]___
CTAAGGCTCCGGGGGGTTCCCGGTCTAC
14._PA_56_[PER]___
AGAAGGAGGGCCCC__AACCCGAC__AC
 29 30 31 32 33 34 35 36 37 38 39 40   
_Input profile
AAGGAACCAGCCACCCGGCCAAGGX_XX_X
1._PA_56_[PER]___
AAGGAACCAGCCACCCGGCCAAGGX_XX_X
2._PA_56_[PER]___
AA__AACCAGCCACCCGGCC____X_XX_X
3._PA_56_[PER]___
AAGGAACCAGCCAACCGGCCAAGGX_XX_X
4._PA_56_[PER]___
AAGGAACCAGCCAACCGGCCAAGGX_XX_X
5._PA_56_[PER]___
AAGGAACCAGCCAACCGGCCAAGGX_XX_X
6._PA_56_[PER]___
AAGGAACCAGCCAACCGGCCAAGGX_XX_X
7._PA_56_[PER]___
AAGGAACCAGCCAACCGGCCAAGGX_XX_X
8._PA_56_[PER]___
AAGGAACCAGCCAACCGGCCAAGGX_XX_X
9._PA_56_[PER]___
AAGGAACCAGCCAACCGGCCAAGGX_XX_X
10._PA_56_[PER]___
AAGGAACCAGCCAACCGGCCAAGGX_XX_X
11._PA_56_[PER]___
________AG________CC____X_XX_X
12._PA_56_[PER]___
AAGG__CCAGCCAACCGGCCAAGGX_XX_X
13._PA_56_[PER]___
AAGG__CCAGCCAACCGGCCAAGGX_XX_X
14._PA_56_[PER]___
__GGAAGGAGGGACGGCCCCAAGGX_XX_X

Input profile: PA_56_[PER] RUQ_32

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

1._PA_56_[PER]

identical
40 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D 238
 Dapeng Zhang, 2016

2._PA_56_[PER] RUQ_32

identical
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

3._PA_56_[PER] NA

96.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: Dead
 Mars, 2018

4._PA_56_[PER] NA

96.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: Dead
 Mars, 2018

5._PA_56_[PER] NA

96.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

6._PA_56_[PER] NA

96.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

7._PA_56_[PER]

96.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8176 6
 Dapeng Zhang, 2016

8._PA_56_[PER]

96.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8176 4
 Dapeng Zhang, 2016

9._PA_56_[PER]

96.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8176 3
 Dapeng Zhang, 2016

10._PA_56_[PER]

96.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8176 2
 Dapeng Zhang, 2016

11._PA_56_[PER] RUQ_32

96.2 %
13 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

12._PA_56_[PER] NA

96.2 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

13._PA_56_[PER]

96.2 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8176 1
 Dapeng Zhang, 2016

14._PA_56_[PER] -

51.4 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 8, Block: 1, Rep: 76, Tree: 1
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP998 15TcSNP994
16TcSNP953 17TcSNP929 18TcSNP917 19TcSNP891 20TcSNP872
21TcSNP723 22TcSNP645 23TcSNP619 24TcSNP591 25TcSNP577
26TcSNP560 27TcSNP534 28TcSNP529 29TcSNP469 30TcSNP429
31TcSNP372 32TcSNP242 33TcSNP230 34TcSNP226 35TcSNP193
36TcSNP151 37TcSNP150 38TcSNP144 39TcSNP32 40TcSNP25