SNP Profiles of PA56 [PER]   View Data

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 Key

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_Input profile
CCGGCGCTTTACCCTTCCCCAAGGCCAG
1._RUQ_32
CCGGCGCTTTACCCTTCCCCAAGGCCAG
2._RUQ_32
__GGCGCT______TT________CCAG
3._NA
CCGGCGCTTTACCCTTCCCCAAGGCCAG
4._NA
CCGGCGCTTTACCCTTCCCCAAGGCCAG
5._NA
CCGGCGCTTTACCCTTCCCCAAGGCCAG
6._NA
CCGGCGCTTTACCCTTCCCCAAGGCCAG
7._PA_56_[PER]
CCGGCGCTTTACCCTTCCCCAAGGCCAG
8._PA_56_[PER]
CCGGCGCTTTACCCTTCCCCAAGGCCAG
9._PA_56_[PER]
CCGGCGCTTTACCCTTCCCCAAGGCCAG
10._PA_56_[PER]
CCGGCGCTTTACCCTTCCCCAAGGCCAG
11._RUQ_32
____CG________TT__CC__GG__AG
12._NA
CCGGCGCTTTACCCTTCCCCAAGGCCAG
13._PA_56_[PER]
CCGGCGCTTTACCCTTCCCCAAGGCCAG
14._-
GGGGCGAGAAACGGAA____AAGGGGAG
 1516171819202122232425262728
_Input profile
CTAAGGCTCCGGGGAATTCCCGGTCTAC
1._RUQ_32
CTAAGGCTCCGGGGAATTCCCGGTCTAC
2._RUQ_32
________CCGGGG__TTCCCGGTCTAC
3._NA
CTAAGGCTCCGGGGGGTTCCCGGTCTAC
4._NA
CTAAGGCTCCGGGGGGTTCCCGGTCTAC
5._NA
CTAAGGCTCCGGGGGGTTCCCGGTCTAC
6._NA
CTAAGGCTCCGGGGGGTTCCCGGTCTAC
7._PA_56_[PER]
CTAAGGCTCCGGGGGGTTCCCGGTCTAC
8._PA_56_[PER]
CTAAGGCTCCGGGGGGTTCCCGGTCTAC
9._PA_56_[PER]
CTAAGGCTCCGGGGGGTTCCCGGTCTAC
10._PA_56_[PER]
CTAAGGCTCCGGGGGGTTCCCGGTCTAC
11._RUQ_32
__________GGGGAA__CCCG____AA
12._NA
CTAAGGCTCCGGGGGGTTCCCGGTCTAC
13._PA_56_[PER]
CTAAGGCTCCGGGGGGTTCCCGGTCTAC
14._-
AGAAGGAGGGCCCC__AACCCGAC__AC
 293031323334353637383940  
_Input profile
AAGGAACCAGCCACCCGGCCAAGGX_XX_X
1._RUQ_32
AAGGAACCAGCCACCCGGCCAAGGX_XX_X
2._RUQ_32
AA__AACCAGCCACCCGGCC____X_XX_X
3._NA
AAGGAACCAGCCAACCGGCCAAGGX_XX_X
4._NA
AAGGAACCAGCCAACCGGCCAAGGX_XX_X
5._NA
AAGGAACCAGCCAACCGGCCAAGGX_XX_X
6._NA
AAGGAACCAGCCAACCGGCCAAGGX_XX_X
7._PA_56_[PER]
AAGGAACCAGCCAACCGGCCAAGGX_XX_X
8._PA_56_[PER]
AAGGAACCAGCCAACCGGCCAAGGX_XX_X
9._PA_56_[PER]
AAGGAACCAGCCAACCGGCCAAGGX_XX_X
10._PA_56_[PER]
AAGGAACCAGCCAACCGGCCAAGGX_XX_X
11._RUQ_32
________AG________CC____X_XX_X
12._NA
AAGG__CCAGCCAACCGGCCAAGGX_XX_X
13._PA_56_[PER]
AAGG__CCAGCCAACCGGCCAAGGX_XX_X
14._-
__GGAAGGAGGGACGGCCCCAAGGX_XX_X

Input profile: PA_56_[PER]

 
International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D 238
 Dapeng Zhang, 2016

1._PA_56_[PER] RUQ_32

identical
40 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

2._PA_56_[PER] RUQ_32

identical
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

3._PA_56_[PER] NA

96.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: Dead
 Mars, 2018

4._PA_56_[PER] NA

96.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: Dead
 Mars, 2018

5._PA_56_[PER] NA

96.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

6._PA_56_[PER] NA

96.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

7._PA_56_[PER]

96.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8176 6
 Dapeng Zhang, 2016

8._PA_56_[PER]

96.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8176 4
 Dapeng Zhang, 2016

9._PA_56_[PER]

96.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8176 3
 Dapeng Zhang, 2016

10._PA_56_[PER]

96.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8176 2
 Dapeng Zhang, 2016

11._PA_56_[PER] RUQ_32

96.2 %
13 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

12._PA_56_[PER] NA

96.2 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

13._PA_56_[PER]

96.2 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8176 1
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

14._PA_56_[PER] -

51.4 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 8, Block: 1, Rep: 76, Tree: 1
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP998 15TcSNP994
16TcSNP953 17TcSNP929 18TcSNP917 19TcSNP891 20TcSNP872
21TcSNP723 22TcSNP645 23TcSNP619 24TcSNP591 25TcSNP577
26TcSNP560 27TcSNP534 28TcSNP529 29TcSNP469 30TcSNP429
31TcSNP372 32TcSNP242 33TcSNP230 34TcSNP226 35TcSNP193
36TcSNP151 37TcSNP150 38TcSNP144 39TcSNP32 40TcSNP25