SNP Profiles of PA 175 [PER]   View Data

 Show/Hide Profiles

 Key

 1234567891011121314
_Input profile
CCGGCGCTTTACCCTTCCCCAAAGCCAA
1._PA_175_[PER]
CCGGCGCTTTACCCTTCCCCAAAGCCAA
2._PA_175_[PER]
CCGGCGCTTTACCCTTCCCCAAAGCCAA
3._PA_175_[PER]
CCGGCGCTTTACCCTTCCCCAAAGCCAA
4._NA
CCGGCGCTTTACCCTTCCCCAAAGCCAA
5._NA
CCGGCGCTTTACCCTTCCCCAAAGCCAA
6._NA
CCGGCGCTTTACCCTTCCCCAAAGCCAA
7._NA
CCGGCGCTTTACCCTTCCCCAAAGCCAA
8._RUQ_37
__GGCGCT______TT________CCAA
9._RUQ_37
CCGGCGCTTTACCCTTCCCCAAAGCCAA
10._PA_175_[PER]
CCGGCGCTTTACCCTTCCCCAAAGCCAA
11._PA_175_[PER]
CCGGCGCTTTACCCTTCCCCAAAGCCAA
12._RUQ_37
____CG________TT__CC__AG__AA
13._-
GGGGCGAGAAACGGAA____AAAGGGAA
14._RUQ_37
GGGGCGAGAAACGGAA____AAAGGGAA
15._MITC-000016
GGGGCGAGAAACGGAA____AAAGGGAA
 1516171819202122232425262728
_Input profile
TTAACGCTCCGGGGGGTTACCGGTCTAC
1._PA_175_[PER]
TTAACGCTCCGGGGGGTTACCGGTCTAC
2._PA_175_[PER]
TTAACGCTCCGGGGGGTTACCGGTCTAC
3._PA_175_[PER]
TTAACGCTCCGGGGGGTTACCGGTCTAC
4._NA
TTAACGCTCCGGGGGGTTACCGGTCTAC
5._NA
TTAACGCTCCGGGGGGTTACCGGTCTAC
6._NA
TTAACGCTCCGGGGGGTTACCGGTCTAC
7._NA
TTAACGCTCCGGGGGGTTACCGGTCTAC
8._RUQ_37
________CCGGGG__TTACCGGTCTAC
9._RUQ_37
TTAACGCTCCGGGGAATTACCGGTCTAC
10._PA_175_[PER]
TTAACGCTCCGGGGAATTACCGGTCTAC
11._PA_175_[PER]
TTAACGCTCCGG__AATTACCGGTCTAC
12._RUQ_37
__________GGGGAA__ACCG____AA
13._-
AAAACGAGGGCCCC__AAACCGAC__AC
14._RUQ_37
AAAACGAGGGCCCC__AAACCGAC__AC
15._MITC-000016
AAAACGAGGGCCCC__AAACCGAC__AC
 293031323334353637383940  
_Input profile
AAGGAACCGGCCAACCGGCCATGGX_XX_X
1._PA_175_[PER]
AAGGAACCGGCCAACCGGCCATGGX_XX_X
2._PA_175_[PER]
AAGGAACCGGCCAACCGGCCATGGX_XX_X
3._PA_175_[PER]
AAGGAACCGGCCAACCGGCCATGGX_XX_X
4._NA
AAGGAACCGGCCAACCGGCCATGGX_XX_X
5._NA
AAGGAACCGGCCAACCGGCCATGGX_XX_X
6._NA
AAGGAACCGGCCAACCGGCCATGGX_XX_X
7._NA
AAGGAACCGGCCAACCGGCCATGGX_XX_X
8._RUQ_37
AA__AACCGGCCAACCGGCC____X_XX_X
9._RUQ_37
AAGGAACCGGCCAACCGGCCATGGX_XX_X
10._PA_175_[PER]
AAGGAACCGGCCAACCGGCCATGGX_XX_X
11._PA_175_[PER]
AAGGAACCGGCCAACCGGCCATGGX_XX_X
12._RUQ_37
________GG________CC____X_XX_X
13._-
__GGAAGGGGGGAAGGCCCCATGGX_XX_X
14._RUQ_37
__GGAAGGGGGGAAGGCCCCATGGX_XX_X
15._MITC-000016
__GGAAGGGGGGAAGGCCCCATGGX_XX_X

Input profile: PA_175_[PER]

 
Mars Center for Cocoa Science, Brazil
Location: 8127 8
 Dapeng Zhang, 2016

1._PA_175_[PER]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8127 5
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

2._PA_175_[PER]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8127 9
 Dapeng Zhang, 2016

3._PA_175_[PER]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8127 12
 Dapeng Zhang, 2016

4._PA_175_[PER] NA

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

5._PA_175_[PER] NA

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

6._PA_175_[PER] NA

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

7._PA_175_[PER] NA

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

8._PA_175_[PER] RUQ_37

identical
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

9._PA_175_[PER] RUQ_37

97.5 %
40 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

10._PA_175_[PER]

97.5 %
40 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D 738
 Dapeng Zhang, 2016

11._PA_175_[PER]

97.4 %
39 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 5B F473 T6
 Dapeng Zhang, 2014

12._PA_175_[PER] RUQ_37

88.5 %
13 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

13._PA_175_[PER] -

51.4 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 8, Block: 1, Rep: 27, Tree: 5
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

14._PA_175_[PER] RUQ_37

51.4 %
35 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

15._PA_175_[PER] MITC-000016

51.4 %
35 shared markers

USDA-SHRS, United States of America
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP998 15TcSNP994
16TcSNP953 17TcSNP929 18TcSNP917 19TcSNP891 20TcSNP872
21TcSNP723 22TcSNP645 23TcSNP619 24TcSNP591 25TcSNP577
26TcSNP560 27TcSNP534 28TcSNP529 29TcSNP469 30TcSNP429
31TcSNP372 32TcSNP242 33TcSNP230 34TcSNP226 35TcSNP193
36TcSNP151 37TcSNP150 38TcSNP144 39TcSNP32 40TcSNP25