SNP Profiles of PA 156/T1   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
CTAGGGCTTTAACTTTCCTTAAAACCAG
1._PA_156_[PER]___
CTAGGGCTTTAACTTTCCTTAAAACCAG
2._PA_156_[PER]___
CTAGGGCTTTAACTTTCCTTAAAACCAG
3._PA_156_[PER]___
CTAGGGCTTTAACTTTCCTTAAAACCAG
4._PA_156_[PER]___
CTAGGGCTTTAACTTTCCTTAAAACCAG
5._PA_156_[PER]___
CTAGGGCTTTAACTTTCCTTAAAACCAG
6._PA_156_[PER]___
CTAGGGCTTTAACTTTCCTTAAAACCAG
7._PA_156_[PER]___
CTAGGGCTTTAACTTTCCTTAAAACCAG
8._PA_156_[PER]___
CTAGGGCTTTAACTTTCCTTAAAACCAG
9._PA_156_[PER]___
CTAGGGCTTTAACTTTCCTTAAAACCAG
10._PA_156_[PER]___
__AGGGCT______TT________CCAG
11._PA_156_[PER]___
CCAGGGCTTTCCTTTTCC__AAGGCCAG
12._PA_156_[PER]___
CCAGGGCTTTCCTTTTCCCCAAGGCCAG
13._PA_156_[PER]___
CCAGGGCTTTCCTTTTCCCCAAGGCCAG
14._PA_156_[PER]___
CCAGGGCTTTCCTTTTCCCCAAGGCCAG
15._PA_156_[PER]___
CCAGGGCTTTCCTTTTCCCCAAGGCCAG
16._PA_156_[PER]___
CCAGGGCTTTCCTTTTCCCCAAGGCCAG
17._PA_156_[PER]___
CCAGGGCTTTCCTTTTCCCCAAGGCCAG
18._PA_156_[PER]___
CCAGGGCTTTCCTTTTCCCCAAGGCCAG
19._PA_156_[PER]___
CCAGGGCTTTCCTTTTCCCCAAGGCCAG
20._PA_156_[PER]___
CCAGGGCTTTCCTTTTCCCCAAGGCCAG
21._PA_156_[PER]___
CCAGGGCTTTCCTTTTCCCCAAGGCCAG
22._PA_156_[PER]___
CCAGGGCTTTCCTTTTCCCCAAGGCCAG
23._PA_156_[PER]___
CCAGGGCTTTCCTTTTCCCCAAGGCCAG
24._PA_156_[PER]___
____GG________TT__CC__GG__AG
25._PA_156_[PER]___
____CC__________________CC__
26._PA_156_[PER]___
GGAGCCAGAACCAAAA____AAGGGGAG
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
TTAACGCTCTCGGGAGCTAACGGTCTCC
1._PA_156_[PER]___
TTAACGCTCTCGGGAGCTAACGGTCTCC
2._PA_156_[PER]___
TTAACGCTCTCGGGAGCTAACGGTCTCC
3._PA_156_[PER]___
TTAACGCTCTCGGGAGCTAACGGTCTCC
4._PA_156_[PER]___
TTAACGCTCTCGGGAGCTAACGGTCTCC
5._PA_156_[PER]___
TTAACGCTCTCGGGAGCTAACGGTCTCC
6._PA_156_[PER]___
TTAACGCTCTCGGGAGCTAACGGTCTCC
7._PA_156_[PER]___
TTAACGCTCTCGGGAGCTAACGGTCTCC
8._PA_156_[PER]___
TTAACGCTCTCGGGAGCTAACGGTCTCC
9._PA_156_[PER]___
TTAACGCTCTCGGGAGCTAACGGTCTCC
10._PA_156_[PER]___
________CCGGGG__TTCCCGTTCCAC
11._PA_156_[PER]___
CCAACGTTCCGGGGAATTCCCGTTCCAC
12._PA_156_[PER]___
CCAACGTTCCGGGGAATTCCCGTTCCAC
13._PA_156_[PER]___
CCAACGTTCCGGGGAATTCCCGTTCCAC
14._PA_156_[PER]___
CCAACGTTCCGGGGAATTCCCGTTCCAC
15._PA_156_[PER]___
CCAACGTTCCGGGGAATTCCCGTTCCAC
16._PA_156_[PER]___
CCAACGTTCCGGGGAATTCCCGTTCCAC
17._PA_156_[PER]___
CCAACGTTCCGGGGAATTCCCGTTCCAC
18._PA_156_[PER]___
CCAACGTTCCGGGGAATTCCCGTTCCAC
19._PA_156_[PER]___
CCAACGTTCCGGGGAATTCCCGTTCCAC
20._PA_156_[PER]___
CCAACGTTCCGGGGAATTCCCGTTCCAC
21._PA_156_[PER]___
CCAACGTTCCGGGGAATTCCCGTTCCAC
22._PA_156_[PER]___
CCAACGTTCCGGGGAATTCCCGTTCCAC
23._PA_156_[PER]___
CCAACGTTCCGGGGAATTCCCGTTCCAC
24._PA_156_[PER]___
__________GGGGAA__CCCG____AC
25._PA_156_[PER]___
CC______CCCC______CCCG______
26._PA_156_[PER]___
GGAACGAAGGCCCC__AACCCGAA__AC
 29 30 31 32 33 34 35 36 37 38 39    
_Input profile
AAGGAACTAACCAATTAAATGGX_XX_XX_X
1._PA_156_[PER]___
AAGGAACTAACCAATTAAATGGX_XX_XX_X
2._PA_156_[PER]___
AAGGAACTAACCAATTAAATGGX_XX_XX_X
3._PA_156_[PER]___
AAGGAACTAACCAATTAAATGGX_XX_XX_X
4._PA_156_[PER]___
AAGGAACTAACCAATTAAATGGX_XX_XX_X
5._PA_156_[PER]___
AAGGAACTAACCAATTAAATGGX_XX_XX_X
6._PA_156_[PER]___
AAGGAACTAACCAATTAAATGGX_XX_XX_X
7._PA_156_[PER]___
AAGGAACTAACCAATTAAATGGX_XX_XX_X
8._PA_156_[PER]___
AAGGAACTAACCAATTAAATGGX_XX_XX_X
9._PA_156_[PER]___
AAGGAACTAACCAATTAAATGGX_XX_XX_X
10._PA_156_[PER]___
AA__AACCAACCAAGGAC____X_XX_XX_X
11._PA_156_[PER]___
AAGGAACCAA__AAGGACATGGX_XX_XX_X
12._PA_156_[PER]___
AAGGAACCAACCAAGGACATGGX_XX_XX_X
13._PA_156_[PER]___
AAGGAACCAACCAAGGACATGGX_XX_XX_X
14._PA_156_[PER]___
AAGGAACCAACCAAGGACATGGX_XX_XX_X
15._PA_156_[PER]___
AAGGAACCAACCAAGGACATGGX_XX_XX_X
16._PA_156_[PER]___
AAGGAACCAACCAAGGACATGGX_XX_XX_X
17._PA_156_[PER]___
AAGGAACCAACCAAGGACATGGX_XX_XX_X
18._PA_156_[PER]___
AAGGAACCAACCAAGGACATGGX_XX_XX_X
19._PA_156_[PER]___
AAGGAACCAACCAAGGACATGGX_XX_XX_X
20._PA_156_[PER]___
AAGGAACCAACCAAGGACATGGX_XX_XX_X
21._PA_156_[PER]___
AAGGAACCAACCAAGGACATGGX_XX_XX_X
22._PA_156_[PER]___
AAGGAACCAACCAAGGACATGGX_XX_XX_X
23._PA_156_[PER]___
AAGGAACCAACCAAGGACATGGX_XX_XX_X
24._PA_156_[PER]___
________AA______AC____X_XX_XX_X
25._PA_156_[PER]___
____AA__AAGGAA__AC____X_XX_XX_X
26._PA_156_[PER]___
__GGAAGGAAGGAACCACATGGX_XX_XX_X

Input profile: PA_156_[PER]

 
Mars Center for Cocoa Science, Brazil
Location: 5340 2 > FP
 Dapeng Zhang, 2016

1._PA_156_[PER] GC-05-138-3-40

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP3
 Mars, 2018

2._PA_156_[PER] GC-05-138-3-40

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

3._PA_156_[PER] GC-05-138-3-40

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

4._PA_156_[PER] GC-05-138-3-40

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

5._PA_156_[PER]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5340 4
 Dapeng Zhang, 2016

6._PA_156_[PER]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5340 5
 Dapeng Zhang, 2016

7._PA_156_[PER]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5340 1 > FP
 Dapeng Zhang, 2016

8._PA_156_[PER]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5340 3 > FP
 Dapeng Zhang, 2016

9._PA_156_[PER] GC-05-138-3-40

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

10._PA_156_[PER] RUQ_1531

73.9 %
23 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

11._PA_156_[PER]

70.3 %
37 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 5A D295 T1
 Dapeng Zhang, 2016

12._PA_156_[PER]

69.2 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5339 1
 Dapeng Zhang, 2016

13._PA_156_[PER] GC-05-137-3-39

69.2 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP4
 Mars, 2018

14._PA_156_[PER] GC-05-137-3-39

69.2 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP3
 Mars, 2018

15._PA_156_[PER] GC-05-137-3-39

69.2 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP2
 Mars, 2018

16._PA_156_[PER] GC-05-137-3-39

69.2 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

17._PA_156_[PER] GC-05-137-3-39

69.2 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

18._PA_156_[PER]

69.2 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5339 2
 Dapeng Zhang, 2016

19._PA_156_[PER]

69.2 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5339 3 > FP
 Dapeng Zhang, 2016

20._PA_156_[PER]

69.2 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5339 4 > FP
 Dapeng Zhang, 2016

21._PA_156_[PER]

69.2 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5339 5 > FP
 Dapeng Zhang, 2016

22._PA_156_[PER] RUQ_1531

69.2 %
39 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

23._PA_156_[PER]

69.2 %
39 shared markers

Malaysian Cocoa Board (MCB), Malaysia
Location: Plot 1 - Row1 C0184 28
 Dapeng Zhang, 2016

24._PA_156_[PER] RUQ_1531

61.5 %
13 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

25._PA_156_[PER] PA156[PER]

54.2 %
12 shared markers

Center for Forestry Research and Technology Transfer, Vietnam
Location: CEFORTT
 Jocelyn De Wever et al., 2019

26._PA_156_[PER] RUQ_1531

39.7 %
34 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP998 15TcSNP994
16TcSNP953 17TcSNP929 18TcSNP917 19TcSNP891 20TcSNP872
21TcSNP723 22TcSNP645 23TcSNP619 24TcSNP591 25TcSNP577
26TcSNP560 27TcSNP534 28TcSNP529 29TcSNP469 30TcSNP429
31TcSNP372 32TcSNP242 33TcSNP230 34TcSNP226 35TcSNP193
36TcSNP150 37TcSNP144 38TcSNP32 39TcSNP25