SNP Profiles of PA 156 [PER]   View Data

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 Key

 1234567891011121314
_Input profile
CTAGGGCTTTAACTTTCCTTAAAACCAG
1._GC-05-138-3-40
CTAGGGCTTTAACTTTCCTTAAAACCAG
2._GC-05-138-3-40
CTAGGGCTTTAACTTTCCTTAAAACCAG
3._GC-05-138-3-40
CTAGGGCTTTAACTTTCCTTAAAACCAG
4._GC-05-138-3-40
CTAGGGCTTTAACTTTCCTTAAAACCAG
5._PA_156_[PER]
CTAGGGCTTTAACTTTCCTTAAAACCAG
6._PA_156_[PER]
CTAGGGCTTTAACTTTCCTTAAAACCAG
7._PA_156_[PER]
CTAGGGCTTTAACTTTCCTTAAAACCAG
8._PA_156_[PER]
CTAGGGCTTTAACTTTCCTTAAAACCAG
9._GC-05-138-3-40
CTAGGGCTTTAACTTTCCTTAAAACCAG
10._RUQ_1531
__AGGGCT______TT________CCAG
11._PA_156_[PER]
CCAGGGCTTTCCTTTTCC__AAGGCCAG
12._GC-05-137-3-39
CCAGGGCTTTCCTTTTCCCCAAGGCCAG
13._GC-05-137-3-39
CCAGGGCTTTCCTTTTCCCCAAGGCCAG
14._GC-05-137-3-39
CCAGGGCTTTCCTTTTCCCCAAGGCCAG
15._GC-05-137-3-39
CCAGGGCTTTCCTTTTCCCCAAGGCCAG
16._PA_156_[PER]
CCAGGGCTTTCCTTTTCCCCAAGGCCAG
17._PA_156_[PER]
CCAGGGCTTTCCTTTTCCCCAAGGCCAG
18._PA_156_[PER]
CCAGGGCTTTCCTTTTCCCCAAGGCCAG
19._PA_156_[PER]
CCAGGGCTTTCCTTTTCCCCAAGGCCAG
20._RUQ_1531
CCAGGGCTTTCCTTTTCCCCAAGGCCAG
21._PA_156_[PER]
CCAGGGCTTTCCTTTTCCCCAAGGCCAG
22._PA_156_[PER]
CCAGGGCTTTCCTTTTCCCCAAGGCCAG
23._GC-05-137-3-39
CCAGGGCTTTCCTTTTCCCCAAGGCCAG
24._RUQ_1531
____GG________TT__CC__GG__AG
25._PA156[PER]
____CC__________________CC__
26._RUQ_1531
GGAGCCAGAACCAAAA____AAGGGGAG
 1516171819202122232425262728
_Input profile
TTAACGCTCTCGGGAGCTAACGGTCTCC
1._GC-05-138-3-40
TTAACGCTCTCGGGAGCTAACGGTCTCC
2._GC-05-138-3-40
TTAACGCTCTCGGGAGCTAACGGTCTCC
3._GC-05-138-3-40
TTAACGCTCTCGGGAGCTAACGGTCTCC
4._GC-05-138-3-40
TTAACGCTCTCGGGAGCTAACGGTCTCC
5._PA_156_[PER]
TTAACGCTCTCGGGAGCTAACGGTCTCC
6._PA_156_[PER]
TTAACGCTCTCGGGAGCTAACGGTCTCC
7._PA_156_[PER]
TTAACGCTCTCGGGAGCTAACGGTCTCC
8._PA_156_[PER]
TTAACGCTCTCGGGAGCTAACGGTCTCC
9._GC-05-138-3-40
TTAACGCTCTCGGGAGCTAACGGTCTCC
10._RUQ_1531
________CCGGGG__TTCCCGTTCCAC
11._PA_156_[PER]
CCAACGTTCCGGGGAATTCCCGTTCCAC
12._GC-05-137-3-39
CCAACGTTCCGGGGAATTCCCGTTCCAC
13._GC-05-137-3-39
CCAACGTTCCGGGGAATTCCCGTTCCAC
14._GC-05-137-3-39
CCAACGTTCCGGGGAATTCCCGTTCCAC
15._GC-05-137-3-39
CCAACGTTCCGGGGAATTCCCGTTCCAC
16._PA_156_[PER]
CCAACGTTCCGGGGAATTCCCGTTCCAC
17._PA_156_[PER]
CCAACGTTCCGGGGAATTCCCGTTCCAC
18._PA_156_[PER]
CCAACGTTCCGGGGAATTCCCGTTCCAC
19._PA_156_[PER]
CCAACGTTCCGGGGAATTCCCGTTCCAC
20._RUQ_1531
CCAACGTTCCGGGGAATTCCCGTTCCAC
21._PA_156_[PER]
CCAACGTTCCGGGGAATTCCCGTTCCAC
22._PA_156_[PER]
CCAACGTTCCGGGGAATTCCCGTTCCAC
23._GC-05-137-3-39
CCAACGTTCCGGGGAATTCCCGTTCCAC
24._RUQ_1531
__________GGGGAA__CCCG____AC
25._PA156[PER]
CC______CCCC______CCCG______
26._RUQ_1531
GGAACGAAGGCCCC__AACCCGAA__AC
 293031323334353637383940  
_Input profile
AAGGAACTAACCAACCTTAAATGGX_XX_X
1._GC-05-138-3-40
AAGGAACTAACCAACCTTAAATGGX_XX_X
2._GC-05-138-3-40
AAGGAACTAACCAACCTTAAATGGX_XX_X
3._GC-05-138-3-40
AAGGAACTAACCAACCTTAAATGGX_XX_X
4._GC-05-138-3-40
AAGGAACTAACCAACCTTAAATGGX_XX_X
5._PA_156_[PER]
AAGGAACTAACCAACCTTAAATGGX_XX_X
6._PA_156_[PER]
AAGGAACTAACCAACCTTAAATGGX_XX_X
7._PA_156_[PER]
AAGGAACTAACCAACCTTAAATGGX_XX_X
8._PA_156_[PER]
AAGGAACTAACCAA__TTAAATGGX_XX_X
9._GC-05-138-3-40
AAGGAACTAACCAA__TTAAATGGX_XX_X
10._RUQ_1531
AA__AACCAACCAACCGGAC____X_XX_X
11._PA_156_[PER]
AAGGAACCAA__AACCGGACATGGX_XX_X
12._GC-05-137-3-39
AAGGAACCAACCAACCGGACATGGX_XX_X
13._GC-05-137-3-39
AAGGAACCAACCAACCGGACATGGX_XX_X
14._GC-05-137-3-39
AAGGAACCAACCAACCGGACATGGX_XX_X
15._GC-05-137-3-39
AAGGAACCAACCAACCGGACATGGX_XX_X
16._PA_156_[PER]
AAGGAACCAACCAACCGGACATGGX_XX_X
17._PA_156_[PER]
AAGGAACCAACCAACCGGACATGGX_XX_X
18._PA_156_[PER]
AAGGAACCAACCAACCGGACATGGX_XX_X
19._PA_156_[PER]
AAGGAACCAACCAACCGGACATGGX_XX_X
20._RUQ_1531
AAGGAACCAACCAACCGGACATGGX_XX_X
21._PA_156_[PER]
AAGGAACCAACCAACCGGACATGGX_XX_X
22._PA_156_[PER]
AAGGAACCAACCAA__GGACATGGX_XX_X
23._GC-05-137-3-39
AAGGAACCAACCAA__GGACATGGX_XX_X
24._RUQ_1531
________AA________AC____X_XX_X
25._PA156[PER]
____AA__AAGGAACC__AC____X_XX_X
26._RUQ_1531
__GGAAGGAAGGAAGGCCACATGGX_XX_X

Input profile: PA_156_[PER]

 
Mars Center for Cocoa Science, Brazil
Location: 5340 1 > FP
 Dapeng Zhang, 2016

1._PA_156_[PER] GC-05-138-3-40

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP3
 Mars, 2018

2._PA_156_[PER] GC-05-138-3-40

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

3._PA_156_[PER] GC-05-138-3-40

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

4._PA_156_[PER] GC-05-138-3-40

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

5._PA_156_[PER]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5340 4
 Dapeng Zhang, 2016

6._PA_156_[PER]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5340 5
 Dapeng Zhang, 2016

7._PA_156_[PER]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5340 3 > FP
 Dapeng Zhang, 2016

8._PA_156_[PER]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5340 2 > FP
 Dapeng Zhang, 2016

9._PA_156_[PER] GC-05-138-3-40

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

10._PA_156_[PER] RUQ_1531

75 %
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

11._PA_156_[PER]

71.1 %
38 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 5A D295 T1
 Dapeng Zhang, 2016

12._PA_156_[PER] GC-05-137-3-39

70 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP4
 Mars, 2018

13._PA_156_[PER] GC-05-137-3-39

70 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP3
 Mars, 2018

14._PA_156_[PER] GC-05-137-3-39

70 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP2
 Mars, 2018

15._PA_156_[PER] GC-05-137-3-39

70 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

16._PA_156_[PER]

70 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5339 2
 Dapeng Zhang, 2016

17._PA_156_[PER]

70 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5339 3 > FP
 Dapeng Zhang, 2016

18._PA_156_[PER]

70 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5339 4 > FP
 Dapeng Zhang, 2016

19._PA_156_[PER]

70 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5339 5 > FP
 Dapeng Zhang, 2016

20._PA_156_[PER] RUQ_1531

70 %
40 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

21._PA_156_[PER]

70 %
40 shared markers

Malaysian Cocoa Board (MCB), Malaysia
Location: Plot 1 - Row1 C0184 28
 Dapeng Zhang, 2016

22._PA_156_[PER]

69.2 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5339 1
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

23._PA_156_[PER] GC-05-137-3-39

69.2 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

24._PA_156_[PER] RUQ_1531

61.5 %
13 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

25._PA_156_[PER] PA156[PER]

57.7 %
13 shared markers

Center for Forestry Research and Technology Transfer, Vietnam
Location: CEFORTT
 Jocelyn De Wever et al., 2019

26._PA_156_[PER] RUQ_1531

38.6 %
35 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP998 15TcSNP994
16TcSNP953 17TcSNP929 18TcSNP917 19TcSNP891 20TcSNP872
21TcSNP723 22TcSNP645 23TcSNP619 24TcSNP591 25TcSNP577
26TcSNP560 27TcSNP534 28TcSNP529 29TcSNP469 30TcSNP429
31TcSNP372 32TcSNP242 33TcSNP230 34TcSNP226 35TcSNP193
36TcSNP151 37TcSNP150 38TcSNP144 39TcSNP32 40TcSNP25