SNP Profiles of PA 156/T1   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
CCAGGGCTTTCCTTTTCCCCAAGGCCAG
1._PA_156_[PER]___
CCAGGGCTTTCCTTTTCCCCAAGGCCAG
2._PA_156_[PER]___
CCAGGGCTTTCCTTTTCCCCAAGGCCAG
3._PA_156_[PER]___
CCAGGGCTTTCCTTTTCCCCAAGGCCAG
4._PA_156_[PER]___
CCAGGGCTTTCCTTTTCCCCAAGGCCAG
5._PA_156_[PER]___
CCAGGGCTTTCCTTTTCCCCAAGGCCAG
6._PA_156_[PER]___
CCAGGGCTTTCCTTTTCCCCAAGGCCAG
7._PA_156_[PER]___
CCAGGGCTTTCCTTTTCCCCAAGGCCAG
8._PA_156_[PER]___
CCAGGGCTTTCCTTTTCCCCAAGGCCAG
9._PA_156_[PER]___
CCAGGGCTTTCCTTTTCCCCAAGGCCAG
10._PA_156_[PER]___
CCAGGGCTTTCCTTTTCCCCAAGGCCAG
11._PA_156_[PER]___
CCAGGGCTTTCCTTTTCCCCAAGGCCAG
12._PA_156_[PER]___
CCAGGGCTTTCCTTTTCC__AAGGCCAG
13._PA_156_[PER]___
__AGGGCT______TT________CCAG
14._PA_156_[PER]___
____GG________TT__CC__GG__AG
15._PA_156_[PER]___
____CC__________________CC__
16._PA_156_[PER]___
CTAGGGCTTTAACTTTCCTTAAAACCAG
17._PA_156_[PER]___
CTAGGGCTTTAACTTTCCTTAAAACCAG
18._PA_156_[PER]___
CTAGGGCTTTAACTTTCCTTAAAACCAG
19._PA_156_[PER]___
CTAGGGCTTTAACTTTCCTTAAAACCAG
20._PA_156_[PER]___
CTAGGGCTTTAACTTTCCTTAAAACCAG
21._PA_156_[PER]___
CTAGGGCTTTAACTTTCCTTAAAACCAG
22._PA_156_[PER]___
CTAGGGCTTTAACTTTCCTTAAAACCAG
23._PA_156_[PER]___
CTAGGGCTTTAACTTTCCTTAAAACCAG
24._PA_156_[PER]___
CTAGGGCTTTAACTTTCCTTAAAACCAG
25._PA_156_[PER]___
CTAGGGCTTTAACTTTCCTTAAAACCAG
26._PA_156_[PER]___
GGAGCCAGAACCAAAA____AAGGGGAG
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
CCAACGTTCCGGGGAATTCCCGTTCCAC
1._PA_156_[PER]___
CCAACGTTCCGGGGAATTCCCGTTCCAC
2._PA_156_[PER]___
CCAACGTTCCGGGGAATTCCCGTTCCAC
3._PA_156_[PER]___
CCAACGTTCCGGGGAATTCCCGTTCCAC
4._PA_156_[PER]___
CCAACGTTCCGGGGAATTCCCGTTCCAC
5._PA_156_[PER]___
CCAACGTTCCGGGGAATTCCCGTTCCAC
6._PA_156_[PER]___
CCAACGTTCCGGGGAATTCCCGTTCCAC
7._PA_156_[PER]___
CCAACGTTCCGGGGAATTCCCGTTCCAC
8._PA_156_[PER]___
CCAACGTTCCGGGGAATTCCCGTTCCAC
9._PA_156_[PER]___
CCAACGTTCCGGGGAATTCCCGTTCCAC
10._PA_156_[PER]___
CCAACGTTCCGGGGAATTCCCGTTCCAC
11._PA_156_[PER]___
CCAACGTTCCGGGGAATTCCCGTTCCAC
12._PA_156_[PER]___
CCAACGTTCCGGGGAATTCCCGTTCCAC
13._PA_156_[PER]___
________CCGGGG__TTCCCGTTCCAC
14._PA_156_[PER]___
__________GGGGAA__CCCG____AC
15._PA_156_[PER]___
CC______CCCC______CCCG______
16._PA_156_[PER]___
TTAACGCTCTCGGGAGCTAACGGTCTCC
17._PA_156_[PER]___
TTAACGCTCTCGGGAGCTAACGGTCTCC
18._PA_156_[PER]___
TTAACGCTCTCGGGAGCTAACGGTCTCC
19._PA_156_[PER]___
TTAACGCTCTCGGGAGCTAACGGTCTCC
20._PA_156_[PER]___
TTAACGCTCTCGGGAGCTAACGGTCTCC
21._PA_156_[PER]___
TTAACGCTCTCGGGAGCTAACGGTCTCC
22._PA_156_[PER]___
TTAACGCTCTCGGGAGCTAACGGTCTCC
23._PA_156_[PER]___
TTAACGCTCTCGGGAGCTAACGGTCTCC
24._PA_156_[PER]___
TTAACGCTCTCGGGAGCTAACGGTCTCC
25._PA_156_[PER]___
TTAACGCTCTCGGGAGCTAACGGTCTCC
26._PA_156_[PER]___
GGAACGAAGGCCCC__AACCCGAA__AC
 29 30 31 32 33 34 35 36 37 38 39 40   
_Input profile
AAGGAACCAACCAACCGGACATGGX_XX_X
1._PA_156_[PER]___
AAGGAACCAACCAACCGGACATGGX_XX_X
2._PA_156_[PER]___
AAGGAACCAACCAACCGGACATGGX_XX_X
3._PA_156_[PER]___
AAGGAACCAACCAACCGGACATGGX_XX_X
4._PA_156_[PER]___
AAGGAACCAACCAACCGGACATGGX_XX_X
5._PA_156_[PER]___
AAGGAACCAACCAACCGGACATGGX_XX_X
6._PA_156_[PER]___
AAGGAACCAACCAACCGGACATGGX_XX_X
7._PA_156_[PER]___
AAGGAACCAACCAACCGGACATGGX_XX_X
8._PA_156_[PER]___
AAGGAACCAACCAACCGGACATGGX_XX_X
9._PA_156_[PER]___
AAGGAACCAACCAACCGGACATGGX_XX_X
10._PA_156_[PER]___
AAGGAACCAACCAA__GGACATGGX_XX_X
11._PA_156_[PER]___
AAGGAACCAACCAA__GGACATGGX_XX_X
12._PA_156_[PER]___
AAGGAACCAA__AACCGGACATGGX_XX_X
13._PA_156_[PER]___
AA__AACCAACCAACCGGAC____X_XX_X
14._PA_156_[PER]___
________AA________AC____X_XX_X
15._PA_156_[PER]___
____AA__AAGGAACC__AC____X_XX_X
16._PA_156_[PER]___
AAGGAACTAACCAACCTTAAATGGX_XX_X
17._PA_156_[PER]___
AAGGAACTAACCAACCTTAAATGGX_XX_X
18._PA_156_[PER]___
AAGGAACTAACCAACCTTAAATGGX_XX_X
19._PA_156_[PER]___
AAGGAACTAACCAACCTTAAATGGX_XX_X
20._PA_156_[PER]___
AAGGAACTAACCAACCTTAAATGGX_XX_X
21._PA_156_[PER]___
AAGGAACTAACCAACCTTAAATGGX_XX_X
22._PA_156_[PER]___
AAGGAACTAACCAACCTTAAATGGX_XX_X
23._PA_156_[PER]___
AAGGAACTAACCAACCTTAAATGGX_XX_X
24._PA_156_[PER]___
AAGGAACTAACCAA__TTAAATGGX_XX_X
25._PA_156_[PER]___
AAGGAACTAACCAA__TTAAATGGX_XX_X
26._PA_156_[PER]___
__GGAAGGAAGGAAGGCCACATGGX_XX_X

Input profile: PA_156_[PER]

 
Mars Center for Cocoa Science, Brazil
Location: 5339 2
 Dapeng Zhang, 2016

1._PA_156_[PER] GC-05-137-3-39

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP4
 Mars, 2018

2._PA_156_[PER] GC-05-137-3-39

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP3
 Mars, 2018

3._PA_156_[PER] GC-05-137-3-39

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP2
 Mars, 2018

4._PA_156_[PER] GC-05-137-3-39

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

5._PA_156_[PER]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5339 3 > FP
 Dapeng Zhang, 2016

6._PA_156_[PER]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5339 4 > FP
 Dapeng Zhang, 2016

7._PA_156_[PER]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5339 5 > FP
 Dapeng Zhang, 2016

8._PA_156_[PER] RUQ_1531

identical
40 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

9._PA_156_[PER]

identical
40 shared markers

Malaysian Cocoa Board (MCB), Malaysia
Location: Plot 1 - Row1 C0184 28
 Dapeng Zhang, 2016

10._PA_156_[PER]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5339 1
 Dapeng Zhang, 2016

11._PA_156_[PER] GC-05-137-3-39

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

12._PA_156_[PER]

identical
38 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 5A D295 T1
 Dapeng Zhang, 2016

13._PA_156_[PER] RUQ_1531

identical
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

14._PA_156_[PER] RUQ_1531

identical
13 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

15._PA_156_[PER] PA156[PER]

76.9 %
13 shared markers

Center for Forestry Research and Technology Transfer, Vietnam
Location: CEFORTT
 Jocelyn De Wever et al., 2019

16._PA_156_[PER] GC-05-138-3-40

70 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP3
 Mars, 2018

17._PA_156_[PER] GC-05-138-3-40

70 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

18._PA_156_[PER] GC-05-138-3-40

70 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

19._PA_156_[PER] GC-05-138-3-40

70 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

20._PA_156_[PER]

70 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5340 4
 Dapeng Zhang, 2016

21._PA_156_[PER]

70 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5340 5
 Dapeng Zhang, 2016

22._PA_156_[PER]

70 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5340 1 > FP
 Dapeng Zhang, 2016

23._PA_156_[PER]

70 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5340 3 > FP
 Dapeng Zhang, 2016

24._PA_156_[PER]

69.2 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5340 2 > FP
 Dapeng Zhang, 2016

25._PA_156_[PER] GC-05-138-3-40

69.2 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

26._PA_156_[PER] RUQ_1531

48.6 %
35 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP998 15TcSNP994
16TcSNP953 17TcSNP929 18TcSNP917 19TcSNP891 20TcSNP872
21TcSNP723 22TcSNP645 23TcSNP619 24TcSNP591 25TcSNP577
26TcSNP560 27TcSNP534 28TcSNP529 29TcSNP469 30TcSNP429
31TcSNP372 32TcSNP242 33TcSNP230 34TcSNP226 35TcSNP193
36TcSNP151 37TcSNP150 38TcSNP144 39TcSNP32 40TcSNP25