SNP Profiles of PA 156 [PER]   View Data

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 Key

 1234567891011121314
_Input profile
CCAGGGCTTTCCTTTTCCCCAAGGCCAG
1._GC-05-137-3-39
CCAGGGCTTTCCTTTTCCCCAAGGCCAG
2._GC-05-137-3-39
CCAGGGCTTTCCTTTTCCCCAAGGCCAG
3._GC-05-137-3-39
CCAGGGCTTTCCTTTTCCCCAAGGCCAG
4._GC-05-137-3-39
CCAGGGCTTTCCTTTTCCCCAAGGCCAG
5._PA_156_[PER]
CCAGGGCTTTCCTTTTCCCCAAGGCCAG
6._PA_156_[PER]
CCAGGGCTTTCCTTTTCCCCAAGGCCAG
7._PA_156_[PER]
CCAGGGCTTTCCTTTTCCCCAAGGCCAG
8._RUQ_1531
CCAGGGCTTTCCTTTTCCCCAAGGCCAG
9._PA_156_[PER]
CCAGGGCTTTCCTTTTCCCCAAGGCCAG
10._PA_156_[PER]
CCAGGGCTTTCCTTTTCCCCAAGGCCAG
11._GC-05-137-3-39
CCAGGGCTTTCCTTTTCCCCAAGGCCAG
12._PA_156_[PER]
CCAGGGCTTTCCTTTTCC__AAGGCCAG
13._RUQ_1531
__AGGGCT______TT________CCAG
14._RUQ_1531
____GG________TT__CC__GG__AG
15._PA156[PER]
____CC__________________CC__
16._GC-05-138-3-40
CTAGGGCTTTAACTTTCCTTAAAACCAG
17._GC-05-138-3-40
CTAGGGCTTTAACTTTCCTTAAAACCAG
18._GC-05-138-3-40
CTAGGGCTTTAACTTTCCTTAAAACCAG
19._GC-05-138-3-40
CTAGGGCTTTAACTTTCCTTAAAACCAG
20._PA_156_[PER]
CTAGGGCTTTAACTTTCCTTAAAACCAG
21._PA_156_[PER]
CTAGGGCTTTAACTTTCCTTAAAACCAG
22._PA_156_[PER]
CTAGGGCTTTAACTTTCCTTAAAACCAG
23._PA_156_[PER]
CTAGGGCTTTAACTTTCCTTAAAACCAG
24._PA_156_[PER]
CTAGGGCTTTAACTTTCCTTAAAACCAG
25._GC-05-138-3-40
CTAGGGCTTTAACTTTCCTTAAAACCAG
26._RUQ_1531
GGAGCCAGAACCAAAA____AAGGGGAG
 1516171819202122232425262728
_Input profile
CCAACGTTCCGGGGAATTCCCGTTCCAC
1._GC-05-137-3-39
CCAACGTTCCGGGGAATTCCCGTTCCAC
2._GC-05-137-3-39
CCAACGTTCCGGGGAATTCCCGTTCCAC
3._GC-05-137-3-39
CCAACGTTCCGGGGAATTCCCGTTCCAC
4._GC-05-137-3-39
CCAACGTTCCGGGGAATTCCCGTTCCAC
5._PA_156_[PER]
CCAACGTTCCGGGGAATTCCCGTTCCAC
6._PA_156_[PER]
CCAACGTTCCGGGGAATTCCCGTTCCAC
7._PA_156_[PER]
CCAACGTTCCGGGGAATTCCCGTTCCAC
8._RUQ_1531
CCAACGTTCCGGGGAATTCCCGTTCCAC
9._PA_156_[PER]
CCAACGTTCCGGGGAATTCCCGTTCCAC
10._PA_156_[PER]
CCAACGTTCCGGGGAATTCCCGTTCCAC
11._GC-05-137-3-39
CCAACGTTCCGGGGAATTCCCGTTCCAC
12._PA_156_[PER]
CCAACGTTCCGGGGAATTCCCGTTCCAC
13._RUQ_1531
________CCGGGG__TTCCCGTTCCAC
14._RUQ_1531
__________GGGGAA__CCCG____AC
15._PA156[PER]
CC______CCCC______CCCG______
16._GC-05-138-3-40
TTAACGCTCTCGGGAGCTAACGGTCTCC
17._GC-05-138-3-40
TTAACGCTCTCGGGAGCTAACGGTCTCC
18._GC-05-138-3-40
TTAACGCTCTCGGGAGCTAACGGTCTCC
19._GC-05-138-3-40
TTAACGCTCTCGGGAGCTAACGGTCTCC
20._PA_156_[PER]
TTAACGCTCTCGGGAGCTAACGGTCTCC
21._PA_156_[PER]
TTAACGCTCTCGGGAGCTAACGGTCTCC
22._PA_156_[PER]
TTAACGCTCTCGGGAGCTAACGGTCTCC
23._PA_156_[PER]
TTAACGCTCTCGGGAGCTAACGGTCTCC
24._PA_156_[PER]
TTAACGCTCTCGGGAGCTAACGGTCTCC
25._GC-05-138-3-40
TTAACGCTCTCGGGAGCTAACGGTCTCC
26._RUQ_1531
GGAACGAAGGCCCC__AACCCGAA__AC
 293031323334353637383940  
_Input profile
AAGGAACCAACCAACCGGACATGGX_XX_X
1._GC-05-137-3-39
AAGGAACCAACCAACCGGACATGGX_XX_X
2._GC-05-137-3-39
AAGGAACCAACCAACCGGACATGGX_XX_X
3._GC-05-137-3-39
AAGGAACCAACCAACCGGACATGGX_XX_X
4._GC-05-137-3-39
AAGGAACCAACCAACCGGACATGGX_XX_X
5._PA_156_[PER]
AAGGAACCAACCAACCGGACATGGX_XX_X
6._PA_156_[PER]
AAGGAACCAACCAACCGGACATGGX_XX_X
7._PA_156_[PER]
AAGGAACCAACCAACCGGACATGGX_XX_X
8._RUQ_1531
AAGGAACCAACCAACCGGACATGGX_XX_X
9._PA_156_[PER]
AAGGAACCAACCAACCGGACATGGX_XX_X
10._PA_156_[PER]
AAGGAACCAACCAA__GGACATGGX_XX_X
11._GC-05-137-3-39
AAGGAACCAACCAA__GGACATGGX_XX_X
12._PA_156_[PER]
AAGGAACCAA__AACCGGACATGGX_XX_X
13._RUQ_1531
AA__AACCAACCAACCGGAC____X_XX_X
14._RUQ_1531
________AA________AC____X_XX_X
15._PA156[PER]
____AA__AAGGAACC__AC____X_XX_X
16._GC-05-138-3-40
AAGGAACTAACCAACCTTAAATGGX_XX_X
17._GC-05-138-3-40
AAGGAACTAACCAACCTTAAATGGX_XX_X
18._GC-05-138-3-40
AAGGAACTAACCAACCTTAAATGGX_XX_X
19._GC-05-138-3-40
AAGGAACTAACCAACCTTAAATGGX_XX_X
20._PA_156_[PER]
AAGGAACTAACCAACCTTAAATGGX_XX_X
21._PA_156_[PER]
AAGGAACTAACCAACCTTAAATGGX_XX_X
22._PA_156_[PER]
AAGGAACTAACCAACCTTAAATGGX_XX_X
23._PA_156_[PER]
AAGGAACTAACCAACCTTAAATGGX_XX_X
24._PA_156_[PER]
AAGGAACTAACCAA__TTAAATGGX_XX_X
25._GC-05-138-3-40
AAGGAACTAACCAA__TTAAATGGX_XX_X
26._RUQ_1531
__GGAAGGAAGGAAGGCCACATGGX_XX_X

Input profile: PA_156_[PER]

 
Mars Center for Cocoa Science, Brazil
Location: 5339 2
 Dapeng Zhang, 2016

1._PA_156_[PER] GC-05-137-3-39

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP4
 Mars, 2018

2._PA_156_[PER] GC-05-137-3-39

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP3
 Mars, 2018

3._PA_156_[PER] GC-05-137-3-39

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP2
 Mars, 2018

4._PA_156_[PER] GC-05-137-3-39

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

5._PA_156_[PER]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5339 3 > FP
 Dapeng Zhang, 2016

6._PA_156_[PER]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5339 4 > FP
 Dapeng Zhang, 2016

7._PA_156_[PER]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5339 5 > FP
 Dapeng Zhang, 2016

8._PA_156_[PER] RUQ_1531

identical
40 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

9._PA_156_[PER]

identical
40 shared markers

Malaysian Cocoa Board (MCB), Malaysia
Location: Plot 1 - Row1 C0184 28
 Dapeng Zhang, 2016

10._PA_156_[PER]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5339 1
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

11._PA_156_[PER] GC-05-137-3-39

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

12._PA_156_[PER]

identical
38 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 5A D295 T1
 Dapeng Zhang, 2016

13._PA_156_[PER] RUQ_1531

identical
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

14._PA_156_[PER] RUQ_1531

identical
13 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

15._PA_156_[PER] PA156[PER]

76.9 %
13 shared markers

Center for Forestry Research and Technology Transfer, Vietnam
Location: CEFORTT
 Jocelyn De Wever et al., 2019

16._PA_156_[PER] GC-05-138-3-40

70 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP3
 Mars, 2018

17._PA_156_[PER] GC-05-138-3-40

70 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

18._PA_156_[PER] GC-05-138-3-40

70 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

19._PA_156_[PER] GC-05-138-3-40

70 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

20._PA_156_[PER]

70 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5340 4
 Dapeng Zhang, 2016

21._PA_156_[PER]

70 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5340 5
 Dapeng Zhang, 2016

22._PA_156_[PER]

70 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5340 1 > FP
 Dapeng Zhang, 2016

23._PA_156_[PER]

70 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5340 3 > FP
 Dapeng Zhang, 2016

24._PA_156_[PER]

69.2 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5340 2 > FP
 Dapeng Zhang, 2016

25._PA_156_[PER] GC-05-138-3-40

69.2 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

26._PA_156_[PER] RUQ_1531

48.6 %
35 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP998 15TcSNP994
16TcSNP953 17TcSNP929 18TcSNP917 19TcSNP891 20TcSNP872
21TcSNP723 22TcSNP645 23TcSNP619 24TcSNP591 25TcSNP577
26TcSNP560 27TcSNP534 28TcSNP529 29TcSNP469 30TcSNP429
31TcSNP372 32TcSNP242 33TcSNP230 34TcSNP226 35TcSNP193
36TcSNP151 37TcSNP150 38TcSNP144 39TcSNP32 40TcSNP25