SNP Profiles of PA 156 [PER]   View Data

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 Key

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_Input profile
CCAGGGCTTTCCTTTTCCAAGGCCAGCC
1._GC-05-137-3-39
CCAGGGCTTTCCTTTTCCAAGGCCAGCC
2._GC-05-137-3-39
CCAGGGCTTTCCTTTTCCAAGGCCAGCC
3._GC-05-137-3-39
CCAGGGCTTTCCTTTTCCAAGGCCAGCC
4._GC-05-137-3-39
CCAGGGCTTTCCTTTTCCAAGGCCAGCC
5._PA_156_[PER]
CCAGGGCTTTCCTTTTCCAAGGCCAGCC
6._PA_156_[PER]
CCAGGGCTTTCCTTTTCCAAGGCCAGCC
7._PA_156_[PER]
CCAGGGCTTTCCTTTTCCAAGGCCAGCC
8._PA_156_[PER]
CCAGGGCTTTCCTTTTCCAAGGCCAGCC
9._RUQ_1531
CCAGGGCTTTCCTTTTCCAAGGCCAGCC
10._PA_156_[PER]
CCAGGGCTTTCCTTTTCCAAGGCCAGCC
11._PA_156_[PER]
CCAGGGCTTTCCTTTTCCAAGGCCAGCC
12._GC-05-137-3-39
CCAGGGCTTTCCTTTTCCAAGGCCAGCC
13._RUQ_1531
__AGGGCT______TT______CCAG__
14._RUQ_1531
____GG________TT____GG__AG__
15._PA156[PER]
____CC________________CC__CC
16._GC-05-138-3-40
CTAGGGCTTTAACTTTCCAAAACCAGTT
17._GC-05-138-3-40
CTAGGGCTTTAACTTTCCAAAACCAGTT
18._GC-05-138-3-40
CTAGGGCTTTAACTTTCCAAAACCAGTT
19._PA_156_[PER]
CTAGGGCTTTAACTTTCCAAAACCAGTT
20._PA_156_[PER]
CTAGGGCTTTAACTTTCCAAAACCAGTT
21._PA_156_[PER]
CTAGGGCTTTAACTTTCCAAAACCAGTT
22._PA_156_[PER]
CTAGGGCTTTAACTTTCCAAAACCAGTT
23._GC-05-138-3-40
CTAGGGCTTTAACTTTCCAAAACCAGTT
24._GC-05-138-3-40
CTAGGGCTTTAACTTTCCAAAACCAGTT
25._PA_156_[PER]
CTAGGGCTTTAACTTTCCAAAACCAGTT
26._RUQ_1531
GGAGCCAGAACCAAAA__AAGGGGAGGG
 1516171819202122232425262728
_Input profile
AACGTTCCGGGGAATTCCCGTTCCACAA
1._GC-05-137-3-39
AACGTTCCGGGGAATTCCCGTTCCACAA
2._GC-05-137-3-39
AACGTTCCGGGGAATTCCCGTTCCACAA
3._GC-05-137-3-39
AACGTTCCGGGGAATTCCCGTTCCACAA
4._GC-05-137-3-39
AACGTTCCGGGGAATTCCCGTTCCACAA
5._PA_156_[PER]
AACGTTCCGGGGAATTCCCGTTCCACAA
6._PA_156_[PER]
AACGTTCCGGGGAATTCCCGTTCCACAA
7._PA_156_[PER]
AACGTTCCGGGGAATTCCCGTTCCACAA
8._PA_156_[PER]
AACGTTCCGGGGAATTCCCGTTCCACAA
9._RUQ_1531
AACGTTCCGGGGAATTCCCGTTCCACAA
10._PA_156_[PER]
AACGTTCCGGGGAATTCCCGTTCCACAA
11._PA_156_[PER]
AACGTTCCGGGGAATTCCCGTTCCACAA
12._GC-05-137-3-39
AACGTTCCGGGGAATTCCCGTTCCACAA
13._RUQ_1531
______CCGGGG__TTCCCGTTCCACAA
14._RUQ_1531
________GGGGAA__CCCG____AC__
15._PA156[PER]
______CCCC______CCCG________
16._GC-05-138-3-40
AACGCTCTCGGGAGCTAACGGTCTCCAA
17._GC-05-138-3-40
AACGCTCTCGGGAGCTAACGGTCTCCAA
18._GC-05-138-3-40
AACGCTCTCGGGAGCTAACGGTCTCCAA
19._PA_156_[PER]
AACGCTCTCGGGAGCTAACGGTCTCCAA
20._PA_156_[PER]
AACGCTCTCGGGAGCTAACGGTCTCCAA
21._PA_156_[PER]
AACGCTCTCGGGAGCTAACGGTCTCCAA
22._PA_156_[PER]
AACGCTCTCGGGAGCTAACGGTCTCCAA
23._GC-05-138-3-40
AACGCTCTCGGGAGCTAACGGTCTCCAA
24._GC-05-138-3-40
AACGCTCTCGGGAGCTAACGGTCTCCAA
25._PA_156_[PER]
AACGCTCTCGGGAGCTAACGGTCTCCAA
26._RUQ_1531
AACGAAGGCCCC__AACCCGAA__AC__
 29303132333435363738    
_Input profile
GGAACCAAAACCGGACATGGX_XX_XX_XX_X
1._GC-05-137-3-39
GGAACCAAAACCGGACATGGX_XX_XX_XX_X
2._GC-05-137-3-39
GGAACCAAAACCGGACATGGX_XX_XX_XX_X
3._GC-05-137-3-39
GGAACCAAAACCGGACATGGX_XX_XX_XX_X
4._GC-05-137-3-39
GGAACCAAAACCGGACATGGX_XX_XX_XX_X
5._PA_156_[PER]
GGAACCAAAACCGGACATGGX_XX_XX_XX_X
6._PA_156_[PER]
GGAACCAAAACCGGACATGGX_XX_XX_XX_X
7._PA_156_[PER]
GGAACCAAAACCGGACATGGX_XX_XX_XX_X
8._PA_156_[PER]
GGAACCAAAACCGGACATGGX_XX_XX_XX_X
9._RUQ_1531
GGAACCAAAACCGGACATGGX_XX_XX_XX_X
10._PA_156_[PER]
GGAACCAAAACCGGACATGGX_XX_XX_XX_X
11._PA_156_[PER]
GGAACCAAAA__GGACATGGX_XX_XX_XX_X
12._GC-05-137-3-39
GGAACCAAAA__GGACATGGX_XX_XX_XX_X
13._RUQ_1531
__AACCAAAACCGGAC____X_XX_XX_XX_X
14._RUQ_1531
______AA______AC____X_XX_XX_XX_X
15._PA156[PER]
__AA__AAAACC__AC____X_XX_XX_XX_X
16._GC-05-138-3-40
GGAACTAAAACCTTAAATGGX_XX_XX_XX_X
17._GC-05-138-3-40
GGAACTAAAACCTTAAATGGX_XX_XX_XX_X
18._GC-05-138-3-40
GGAACTAAAACCTTAAATGGX_XX_XX_XX_X
19._PA_156_[PER]
GGAACTAAAACCTTAAATGGX_XX_XX_XX_X
20._PA_156_[PER]
GGAACTAAAACCTTAAATGGX_XX_XX_XX_X
21._PA_156_[PER]
GGAACTAAAACCTTAAATGGX_XX_XX_XX_X
22._PA_156_[PER]
GGAACTAAAACCTTAAATGGX_XX_XX_XX_X
23._GC-05-138-3-40
GGAACTAAAACCTTAAATGGX_XX_XX_XX_X
24._GC-05-138-3-40
GGAACTAAAA__TTAAATGGX_XX_XX_XX_X
25._PA_156_[PER]
GGAACTAAAA__TTAAATGGX_XX_XX_XX_X
26._RUQ_1531
GGAAGGAAAAGGCCACATGGX_XX_XX_XX_X

Input profile: PA_156_[PER]

 
International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 5A D295 T1
 Dapeng Zhang, 2016

1._PA_156_[PER] GC-05-137-3-39

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP4
 Mars, 2018

2._PA_156_[PER] GC-05-137-3-39

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP3
 Mars, 2018

3._PA_156_[PER] GC-05-137-3-39

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP2
 Mars, 2018

4._PA_156_[PER] GC-05-137-3-39

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

5._PA_156_[PER]

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5339 2
 Dapeng Zhang, 2016

6._PA_156_[PER]

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5339 3 > FP
 Dapeng Zhang, 2016

7._PA_156_[PER]

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5339 4 > FP
 Dapeng Zhang, 2016

8._PA_156_[PER]

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5339 5 > FP
 Dapeng Zhang, 2016

9._PA_156_[PER] RUQ_1531

identical
38 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

10._PA_156_[PER]

identical
38 shared markers

Malaysian Cocoa Board (MCB), Malaysia
Location: Plot 1 - Row1 C0184 28
 Dapeng Zhang, 2016

11._PA_156_[PER]

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5339 1
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

12._PA_156_[PER] GC-05-137-3-39

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

13._PA_156_[PER] RUQ_1531

identical
23 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

14._PA_156_[PER] RUQ_1531

identical
12 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

15._PA_156_[PER] PA156[PER]

83.3 %
12 shared markers

Center for Forestry Research and Technology Transfer, Vietnam
Location: CEFORTT
 Jocelyn De Wever et al., 2019

16._PA_156_[PER] GC-05-138-3-40

71.1 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

17._PA_156_[PER] GC-05-138-3-40

71.1 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

18._PA_156_[PER] GC-05-138-3-40

71.1 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

19._PA_156_[PER]

71.1 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5340 4
 Dapeng Zhang, 2016

20._PA_156_[PER]

71.1 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5340 5
 Dapeng Zhang, 2016

21._PA_156_[PER]

71.1 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5340 1 > FP
 Dapeng Zhang, 2016

22._PA_156_[PER]

71.1 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5340 3 > FP
 Dapeng Zhang, 2016

23._PA_156_[PER] GC-05-138-3-40

71.1 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP3
 Mars, 2018

24._PA_156_[PER] GC-05-138-3-40

70.3 %
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

25._PA_156_[PER]

70.3 %
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5340 2 > FP
 Dapeng Zhang, 2016

26._PA_156_[PER] RUQ_1531

50 %
34 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1075
11TcSNP1062 12TcSNP1060 13TcSNP998 14TcSNP994 15TcSNP953
16TcSNP929 17TcSNP917 18TcSNP891 19TcSNP872 20TcSNP723
21TcSNP645 22TcSNP619 23TcSNP591 24TcSNP577 25TcSNP560
26TcSNP534 27TcSNP529 28TcSNP469 29TcSNP429 30TcSNP372
31TcSNP242 32TcSNP230 33TcSNP193 34TcSNP151 35TcSNP150
36TcSNP144 37TcSNP32 38TcSNP25