SNP Profiles of PA 150 [PER]   View Data

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 Key

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_Input profile
CTGGGGCCTTACCTTTCCCCAAAGCCAG
1._GC-01-034-2-11
CTGGGGCCTTACCTTTCCCCAAAGCCAG
2._GC-01-034-2-11
CTGGGGCCTTACCTTTCCCCAAAGCCAG
3._PA_150_[PER]
CTGGGGCCTTACCTTTCCCCAAAGCCAG
4._PA_150_[PER]
CTGGGGCCTTACCTTTCCCCAAAGCCAG
5._PA_150_[PER]
CTGGGGCCTTACCTTTCCCCAAAGCCAG
6._GC-01-034-2-11
CTGGGGCCTTACCTTTCCCCAAAGCCAG
7._GC-01-034-2-11
CTGGGGCCTTACCTTTCCCCAAAGCCAG
8._PA_150_[PER]
CTAGGGCCTTACTTTTCCCCAAGGCCAG
9._PA_150_[PER]
CTAGGGCCTTACTTTTCCCCAAGGCCAG
10._PA_150_[PER]
CTAGGGCCTTACTTTTCCCCAAGGCCAG
11._PA_150_[PER]
CTAGGGCCTTACTTTTCC__AAGGCCAG
12._RUQ_1731
____GG________TT__CC__GG__AG
13._PA_150_[PER]
CTAGCGCTCTACCCGTCTCTATAGCTAG
14._GC-01-034-2-11
CTAGCGCTCTACCCGTCTCTATAGCTAG
15._PA_150_[PER]
TTAACGTTCTACCTTTCCCTAAGGTTGG
16._GC-01-034-2-11
TTAACGTTCTACCTTTCCCTAAGGTTGG
17._PA_150_[PER]
TTAACGTTCTACCTTTCCCTAAGGTTGG
18._PA_150_[PER]
TTAACGTTCTACCTTTCCCTAAGGTTGG
19._PA_150_[PER]
TTAACGTTCTACCTTTCCCTAAGGTTGG
20._PA_150_[PER]
TTAACGTTCTACCTTTCCCTAAGGTTGG
21._GC-01-034-2-11
TTAACGTTCTACCTTTCCCTAAGGTTGG
22._GC-01-034-2-11
TTAACGTTCTACCTTTCCCTAAGGTTGG
23._GC-01-034-2-11
TTAACGTTCTACCTTTCCCTAAGGTTGG
24._GC-01-034-2-11
TTAACGTTCTACCTTTCCCTAAGGTTGG
25._PA_150_[PER]
CCAACCTTTTAATTTTCCCCAAGGCTAG
26._PA_150_[PER]
__AGCGTT__CCTTGTCC____GGCTAA
27._GC-01-34-2-11
AGGGCCGGAAACAGAA____AAAGGGAG
28._PA_150_[PER]_Fld#_173_Plt#_1
AGAGCCGGAAACAAAA____AAGGGGAG
29._RUQ_1731
AGAGCCGGAAACAAAA____AAGGGGAG
30._GC-01-34-2-11
AAAACGAAAGACAGAA____AAGGAAGG
31._GC-01-34-2-11
AAAACGAAAGACAGAA____AAGGAAGG
 1516171819202122232425262728
_Input profile
CTAACCCTCCGGGGAGTTCCCGGTCCAC
1._GC-01-034-2-11
CTAACCCTCCGGGGAGTTCCCGGTCCAC
2._GC-01-034-2-11
CTAACCCTCCGGGGAGTTCCCGGTCCAC
3._PA_150_[PER]
CTAACCCTCCGGGGAGTTCCCGGTCCAC
4._PA_150_[PER]
CTAACCCTCCGGGGAGTTCCCGGTCCAC
5._PA_150_[PER]
CTAACCCTCCGGGGAGTTCCCGGTCCAC
6._GC-01-034-2-11
CTAACCCTCCGGGGAGTTCCCGGTCCAC
7._GC-01-034-2-11
CTAACCCTCCGGGGAGTTCCCGGTCCAC
8._PA_150_[PER]
CCAACCCTCCGGGGAATTACCGTTCTAC
9._PA_150_[PER]
CCAACCCTCCGGGGAATTACCGTTCTAC
10._PA_150_[PER]
CCAACCCTCCGGGGAATTACCGTTCTAC
11._PA_150_[PER]
CCAACCCTCCGGGGAATTACCGTTCTAC
12._RUQ_1731
__________GGGGAA__ACCG____AA
13._PA_150_[PER]
CTATCCCTCTCGGGAGTTACCCGTCTAC
14._GC-01-034-2-11
CTATCCCTCTCGGGAGTTACCCGTCTAC
15._PA_150_[PER]
CTAAGGTTCTGGGTGGTTAAGGTTCTAC
16._GC-01-034-2-11
CTAAGGTTCTGGGTGGTTAAGGTTCTAC
17._PA_150_[PER]
CTAAGGTTCTGGGTGGTTAAGGTTCTAC
18._PA_150_[PER]
CTAAGGTTCTGGGTGGTTAAGGTTCTAC
19._PA_150_[PER]
CTAAGGTTCTGGGTGGTTAAGGTTCTAC
20._PA_150_[PER]
CTAAGGTTCTGGGTGGTTAAGGTTCTAC
21._GC-01-034-2-11
CTAAGGTTCTGGGTGGTTAAGGTTCTAC
22._GC-01-034-2-11
CTAAGGTTCTGGGTGGTTAAGGTTCTAC
23._GC-01-034-2-11
CTAAGGTTCTGGGTGGTTAAGGTTCTAC
24._GC-01-034-2-11
CTAAGGTTCTGGGTGGTTAAGGTTCTAC
25._PA_150_[PER]
CTAAGGCTCTCCGGAACTAAGGGTCTCC
26._PA_150_[PER]
CTAACGCCCCCCGGGGCTACGGGGCCAC
27._GC-01-34-2-11
AGAACCAGGGCCCC__AACCCGAC__AC
28._PA_150_[PER]_Fld#_173_Plt#_1
GGAACCAGGGCCCC__AAACCGAA__AC
29._RUQ_1731
GGAACCAGGGCCCC__AAACCGAA__AC
30._GC-01-34-2-11
AGAAGGAAAGCCAC__AAAAGGAA__AC
31._GC-01-34-2-11
AGAAGGAAAGCCAC__AAAAGGAA__AC
 293031323334353637383940  
_Input profile
AAGGAACCAGCCAACCGGCCATGGX_XX_X
1._GC-01-034-2-11
AAGGAACCAGCCAACCGGCCATGGX_XX_X
2._GC-01-034-2-11
AAGGAACCAGCCAACCGGCCATGGX_XX_X
3._PA_150_[PER]
AAGGAACCAGCCAACCGGCCATGGX_XX_X
4._PA_150_[PER]
AAGGAACCAGCCAACCGGCCATGGX_XX_X
5._PA_150_[PER]
AAGGAACCAGCCAACCGGCCATGGX_XX_X
6._GC-01-034-2-11
AAGGAACCAGCCAACCGGCCATGGX_XX_X
7._GC-01-034-2-11
AAGGAACCAGCCAACCGGCCATGGX_XX_X
8._PA_150_[PER]
AGGGAACCGGCCAACCGGACAAGGX_XX_X
9._PA_150_[PER]
AGGGAACCGGCCAACCGGACAAGGX_XX_X
10._PA_150_[PER]
AGGGAACCGGCCAACCGGACAAGGX_XX_X
11._PA_150_[PER]
AGGGAACCGG__AACCGGACAAGGX_XX_X
12._RUQ_1731
________GG________AC____X_XX_X
13._PA_150_[PER]
AGGGAACCAACCACCTGTAAATCGX_XX_X
14._GC-01-034-2-11
AGGGAACCAACCACCTGTAAATCGX_XX_X
15._PA_150_[PER]
AAGGAACCAGCGAATTGTACATGGX_XX_X
16._GC-01-034-2-11
AAGGAACCAGCGAATTGTACATGGX_XX_X
17._PA_150_[PER]
AAGGAACCAGCGAATTGTACATGGX_XX_X
18._PA_150_[PER]
AAGGAACCAGCGAATTGTACATGGX_XX_X
19._PA_150_[PER]
AAGGAACCAGCGAATTGTACATGGX_XX_X
20._PA_150_[PER]
AAGGAACCAGCGAATTGTACATGGX_XX_X
21._GC-01-034-2-11
AAGGAACCAGCGAATTGTACATGGX_XX_X
22._GC-01-034-2-11
AAGGAACCAGCGAATTGTACATGGX_XX_X
23._GC-01-034-2-11
AAGGAACCAGCGAATTGTACATGGX_XX_X
24._GC-01-034-2-11
AAGGAACCAGCGAATTGTACATGGX_XX_X
25._PA_150_[PER]
AAGGAACTAACCAACTGGACTTGGX_XX_X
26._PA_150_[PER]
AGGGAACCAA__ACTTGGCCTTCCX_XX_X
27._GC-01-34-2-11
__GGAAGGAGGGACGGCCCCATGGX_XX_X
28._PA_150_[PER]_Fld#_173_Plt#_1
__GGAAGGGGGGAA__CCACAAGGX_XX_X
29._RUQ_1731
__GGAAGGGGGGAAGGCCACAAGGX_XX_X
30._GC-01-34-2-11
__GGAAGGAGCGACAAACACATGGX_XX_X
31._GC-01-34-2-11
__GGAAGGAGCGACAAACACATGGX_XX_X

Input profile: PA_150_[PER]

 
Mars Center for Cocoa Science, Brazil
Location: 1209 10
 Dapeng Zhang, 2016

1._PA_150_[PER] GC-01-034-2-11

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

2._PA_150_[PER] GC-01-034-2-11

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

3._PA_150_[PER]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1209 2
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

4._PA_150_[PER]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1209 3
 Dapeng Zhang, 2016

5._PA_150_[PER]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1209 7 > FP
 Dapeng Zhang, 2016

6._PA_150_[PER] GC-01-034-2-11

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7 > FP4
 Mars, 2018

7._PA_150_[PER] GC-01-034-2-11

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

8._PA_150_[PER]

85 %
40 shared markers

Cocoa Research Institute of Ghana (CRIG), Ghana
Location: P70 1019
 Dapeng Zhang, 2016

9._PA_150_[PER]

85 %
40 shared markers

Malaysian Cocoa Board (MCB), Malaysia
Location: Plot 1 - Row4 C0183 28
 Dapeng Zhang, 2016

10._PA_150_[PER]

85 %
40 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D 679
 Dapeng Zhang, 2016

11._PA_150_[PER]

84.2 %
38 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D679
 Dapeng Zhang, 2016

12._PA_150_[PER] RUQ_1731

76.9 %
13 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

13._PA_150_[PER]

70 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1209 5 > FP
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

14._PA_150_[PER] GC-01-034-2-11

70 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP2
 Mars, 2018

15._PA_150_[PER]

65 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1209 6
 Dapeng Zhang, 2016

16._PA_150_[PER] GC-01-034-2-11

65 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

17._PA_150_[PER]

65 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1209 4
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

18._PA_150_[PER]

65 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1209 16
 Dapeng Zhang, 2016

19._PA_150_[PER]

65 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1209 14 > F
 Dapeng Zhang, 2016

20._PA_150_[PER]

65 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1209 9 > FP
 Dapeng Zhang, 2016

21._PA_150_[PER] GC-01-034-2-11

65 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

22._PA_150_[PER] GC-01-034-2-11

65 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9 > FP1
 Mars, 2018

23._PA_150_[PER] GC-01-034-2-11

65 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14 > FP3
 Mars, 2018

24._PA_150_[PER] GC-01-034-2-11

65 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

25._PA_150_[PER]

65 %
40 shared markers

Cocoa Research Institute of Ghana (CRIG), Ghana
Location: P74 1009
 Dapeng Zhang, 2016

26._PA_150_[PER]

61.4 %
35 shared markers

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria PA 150
 Dapeng Zhang, 2016

27._PA_150_[PER] GC-01-34-2-11

47.1 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 2, Rep: 9, Tree: 7 > FP4
Notes: Brazil_Selections_Poss_grandparent/ (offtype, similar to offtype EET 272, parcel 3311)
 Mars, 2018

28._PA_150_[PER] PA_150_[PER]_Fld#_173_Plt#_1

41.2 %
34 shared markers

USDA-TARS, United States of America
Location: Field: 173, Tree: 1
 Mars, 2018

29._PA_150_[PER] RUQ_1731

40 %
35 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

30._PA_150_[PER] GC-01-34-2-11

35.7 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 2, Rep: 9, Tree: 5 > FP2
Notes: Brazil_Selections_Poss_grandparent
 Mars, 2018

31._PA_150_[PER] GC-01-34-2-11

35.7 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 2, Rep: 9, Tree: 14 > FP3
Notes: Brazil_Selections_Poss_grandparent
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP998 15TcSNP994
16TcSNP953 17TcSNP929 18TcSNP917 19TcSNP891 20TcSNP872
21TcSNP723 22TcSNP645 23TcSNP619 24TcSNP591 25TcSNP577
26TcSNP560 27TcSNP534 28TcSNP529 29TcSNP469 30TcSNP429
31TcSNP372 32TcSNP242 33TcSNP230 34TcSNP226 35TcSNP193
36TcSNP151 37TcSNP150 38TcSNP144 39TcSNP32 40TcSNP25