SNP Profiles of PA 150 [PER]   View Data

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 Key

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_Input profile
CCAACCTTTTAATTTTCCCCAAGGCTAG
1._PA_150_[PER]
TTAACGTTCTACCTTTCCCTAAGGTTGG
2._GC-01-034-2-11
TTAACGTTCTACCTTTCCCTAAGGTTGG
3._PA_150_[PER]
TTAACGTTCTACCTTTCCCTAAGGTTGG
4._PA_150_[PER]
TTAACGTTCTACCTTTCCCTAAGGTTGG
5._PA_150_[PER]
TTAACGTTCTACCTTTCCCTAAGGTTGG
6._PA_150_[PER]
TTAACGTTCTACCTTTCCCTAAGGTTGG
7._GC-01-034-2-11
TTAACGTTCTACCTTTCCCTAAGGTTGG
8._GC-01-034-2-11
TTAACGTTCTACCTTTCCCTAAGGTTGG
9._GC-01-034-2-11
TTAACGTTCTACCTTTCCCTAAGGTTGG
10._GC-01-034-2-11
TTAACGTTCTACCTTTCCCTAAGGTTGG
11._PA_150_[PER]
__AGCGTT__CCTTGTCC____GGCTAA
12._PA_150_[PER]
CTAGGGCCTTACTTTTCCCCAAGGCCAG
13._PA_150_[PER]
CTAGGGCCTTACTTTTCCCCAAGGCCAG
14._PA_150_[PER]
CTAGGGCCTTACTTTTCCCCAAGGCCAG
15._PA_150_[PER]
CTAGGGCCTTACTTTTCC__AAGGCCAG
16._GC-01-034-2-11
CTGGGGCCTTACCTTTCCCCAAAGCCAG
17._GC-01-034-2-11
CTGGGGCCTTACCTTTCCCCAAAGCCAG
18._PA_150_[PER]
CTGGGGCCTTACCTTTCCCCAAAGCCAG
19._PA_150_[PER]
CTGGGGCCTTACCTTTCCCCAAAGCCAG
20._PA_150_[PER]
CTGGGGCCTTACCTTTCCCCAAAGCCAG
21._PA_150_[PER]
CTGGGGCCTTACCTTTCCCCAAAGCCAG
22._GC-01-034-2-11
CTGGGGCCTTACCTTTCCCCAAAGCCAG
23._GC-01-034-2-11
CTGGGGCCTTACCTTTCCCCAAAGCCAG
24._PA_150_[PER]
CTAGCGCTCTACCCGTCTCTATAGCTAG
25._GC-01-034-2-11
CTAGCGCTCTACCCGTCTCTATAGCTAG
26._RUQ_1731
____GG________TT__CC__GG__AG
27._GC-01-34-2-11
AAAACGAAAGACAGAA____AAGGAAGG
28._GC-01-34-2-11
AAAACGAAAGACAGAA____AAGGAAGG
29._PA_150_[PER]_Fld#_173_Plt#_1
AGAGCCGGAAACAAAA____AAGGGGAG
30._RUQ_1731
AGAGCCGGAAACAAAA____AAGGGGAG
31._GC-01-34-2-11
AGGGCCGGAAACAGAA____AAAGGGAG
 1516171819202122232425262728
_Input profile
CTAAGGCTCTCCGGAACTAAGGGTCTCC
1._PA_150_[PER]
CTAAGGTTCTGGGTGGTTAAGGTTCTAC
2._GC-01-034-2-11
CTAAGGTTCTGGGTGGTTAAGGTTCTAC
3._PA_150_[PER]
CTAAGGTTCTGGGTGGTTAAGGTTCTAC
4._PA_150_[PER]
CTAAGGTTCTGGGTGGTTAAGGTTCTAC
5._PA_150_[PER]
CTAAGGTTCTGGGTGGTTAAGGTTCTAC
6._PA_150_[PER]
CTAAGGTTCTGGGTGGTTAAGGTTCTAC
7._GC-01-034-2-11
CTAAGGTTCTGGGTGGTTAAGGTTCTAC
8._GC-01-034-2-11
CTAAGGTTCTGGGTGGTTAAGGTTCTAC
9._GC-01-034-2-11
CTAAGGTTCTGGGTGGTTAAGGTTCTAC
10._GC-01-034-2-11
CTAAGGTTCTGGGTGGTTAAGGTTCTAC
11._PA_150_[PER]
CTAACGCCCCCCGGGGCTACGGGGCCAC
12._PA_150_[PER]
CCAACCCTCCGGGGAATTACCGTTCTAC
13._PA_150_[PER]
CCAACCCTCCGGGGAATTACCGTTCTAC
14._PA_150_[PER]
CCAACCCTCCGGGGAATTACCGTTCTAC
15._PA_150_[PER]
CCAACCCTCCGGGGAATTACCGTTCTAC
16._GC-01-034-2-11
CTAACCCTCCGGGGAGTTCCCGGTCCAC
17._GC-01-034-2-11
CTAACCCTCCGGGGAGTTCCCGGTCCAC
18._PA_150_[PER]
CTAACCCTCCGGGGAGTTCCCGGTCCAC
19._PA_150_[PER]
CTAACCCTCCGGGGAGTTCCCGGTCCAC
20._PA_150_[PER]
CTAACCCTCCGGGGAGTTCCCGGTCCAC
21._PA_150_[PER]
CTAACCCTCCGGGGAGTTCCCGGTCCAC
22._GC-01-034-2-11
CTAACCCTCCGGGGAGTTCCCGGTCCAC
23._GC-01-034-2-11
CTAACCCTCCGGGGAGTTCCCGGTCCAC
24._PA_150_[PER]
CTATCCCTCTCGGGAGTTACCCGTCTAC
25._GC-01-034-2-11
CTATCCCTCTCGGGAGTTACCCGTCTAC
26._RUQ_1731
__________GGGGAA__ACCG____AA
27._GC-01-34-2-11
AGAAGGAAAGCCAC__AAAAGGAA__AC
28._GC-01-34-2-11
AGAAGGAAAGCCAC__AAAAGGAA__AC
29._PA_150_[PER]_Fld#_173_Plt#_1
GGAACCAGGGCCCC__AAACCGAA__AC
30._RUQ_1731
GGAACCAGGGCCCC__AAACCGAA__AC
31._GC-01-34-2-11
AGAACCAGGGCCCC__AACCCGAC__AC
 293031323334353637383940  
_Input profile
AAGGAACTAACCAACTGGACTTGGX_XX_X
1._PA_150_[PER]
AAGGAACCAGCGAATTGTACATGGX_XX_X
2._GC-01-034-2-11
AAGGAACCAGCGAATTGTACATGGX_XX_X
3._PA_150_[PER]
AAGGAACCAGCGAATTGTACATGGX_XX_X
4._PA_150_[PER]
AAGGAACCAGCGAATTGTACATGGX_XX_X
5._PA_150_[PER]
AAGGAACCAGCGAATTGTACATGGX_XX_X
6._PA_150_[PER]
AAGGAACCAGCGAATTGTACATGGX_XX_X
7._GC-01-034-2-11
AAGGAACCAGCGAATTGTACATGGX_XX_X
8._GC-01-034-2-11
AAGGAACCAGCGAATTGTACATGGX_XX_X
9._GC-01-034-2-11
AAGGAACCAGCGAATTGTACATGGX_XX_X
10._GC-01-034-2-11
AAGGAACCAGCGAATTGTACATGGX_XX_X
11._PA_150_[PER]
AGGGAACCAA__ACTTGGCCTTCCX_XX_X
12._PA_150_[PER]
AGGGAACCGGCCAACCGGACAAGGX_XX_X
13._PA_150_[PER]
AGGGAACCGGCCAACCGGACAAGGX_XX_X
14._PA_150_[PER]
AGGGAACCGGCCAACCGGACAAGGX_XX_X
15._PA_150_[PER]
AGGGAACCGG__AACCGGACAAGGX_XX_X
16._GC-01-034-2-11
AAGGAACCAGCCAACCGGCCATGGX_XX_X
17._GC-01-034-2-11
AAGGAACCAGCCAACCGGCCATGGX_XX_X
18._PA_150_[PER]
AAGGAACCAGCCAACCGGCCATGGX_XX_X
19._PA_150_[PER]
AAGGAACCAGCCAACCGGCCATGGX_XX_X
20._PA_150_[PER]
AAGGAACCAGCCAACCGGCCATGGX_XX_X
21._PA_150_[PER]
AAGGAACCAGCCAACCGGCCATGGX_XX_X
22._GC-01-034-2-11
AAGGAACCAGCCAACCGGCCATGGX_XX_X
23._GC-01-034-2-11
AAGGAACCAGCCAACCGGCCATGGX_XX_X
24._PA_150_[PER]
AGGGAACCAACCACCTGTAAATCGX_XX_X
25._GC-01-034-2-11
AGGGAACCAACCACCTGTAAATCGX_XX_X
26._RUQ_1731
________GG________AC____X_XX_X
27._GC-01-34-2-11
__GGAAGGAGCGACAAACACATGGX_XX_X
28._GC-01-34-2-11
__GGAAGGAGCGACAAACACATGGX_XX_X
29._PA_150_[PER]_Fld#_173_Plt#_1
__GGAAGGGGGGAA__CCACAAGGX_XX_X
30._RUQ_1731
__GGAAGGGGGGAAGGCCACAAGGX_XX_X
31._GC-01-34-2-11
__GGAAGGAGGGACGGCCCCATGGX_XX_X

Input profile: PA_150_[PER]

 
Cocoa Research Institute of Ghana (CRIG), Ghana
Location: P74 1009
 Dapeng Zhang, 2016

1._PA_150_[PER]

70 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1209 4
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

2._PA_150_[PER] GC-01-034-2-11

70 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

3._PA_150_[PER]

70 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1209 6
 Dapeng Zhang, 2016

4._PA_150_[PER]

70 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1209 14 > F
 Dapeng Zhang, 2016

5._PA_150_[PER]

70 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1209 16
 Dapeng Zhang, 2016

6._PA_150_[PER]

70 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1209 9 > FP
 Dapeng Zhang, 2016

7._PA_150_[PER] GC-01-034-2-11

70 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

8._PA_150_[PER] GC-01-034-2-11

70 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14 > FP3
 Mars, 2018

9._PA_150_[PER] GC-01-034-2-11

70 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

10._PA_150_[PER] GC-01-034-2-11

70 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9 > FP1
 Mars, 2018

11._PA_150_[PER]

68.6 %
35 shared markers

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria PA 150
 Dapeng Zhang, 2016

12._PA_150_[PER]

67.5 %
40 shared markers

Cocoa Research Institute of Ghana (CRIG), Ghana
Location: P70 1019
 Dapeng Zhang, 2016

13._PA_150_[PER]

67.5 %
40 shared markers

Malaysian Cocoa Board (MCB), Malaysia
Location: Plot 1 - Row4 C0183 28
 Dapeng Zhang, 2016

14._PA_150_[PER]

67.5 %
40 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D 679
 Dapeng Zhang, 2016

15._PA_150_[PER]

65.8 %
38 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D679
 Dapeng Zhang, 2016

16._PA_150_[PER] GC-01-034-2-11

65 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

17._PA_150_[PER] GC-01-034-2-11

65 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

18._PA_150_[PER]

65 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1209 2
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

19._PA_150_[PER]

65 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1209 3
 Dapeng Zhang, 2016

20._PA_150_[PER]

65 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1209 10
 Dapeng Zhang, 2016

21._PA_150_[PER]

65 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1209 7 > FP
 Dapeng Zhang, 2016

22._PA_150_[PER] GC-01-034-2-11

65 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7 > FP4
 Mars, 2018

23._PA_150_[PER] GC-01-034-2-11

65 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

24._PA_150_[PER]

62.5 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1209 5 > FP
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

25._PA_150_[PER] GC-01-034-2-11

62.5 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP2
 Mars, 2018

26._PA_150_[PER] RUQ_1731

61.5 %
13 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

27._PA_150_[PER] GC-01-34-2-11

45.7 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 2, Rep: 9, Tree: 5 > FP2
Notes: Brazil_Selections_Poss_grandparent
 Mars, 2018

28._PA_150_[PER] GC-01-34-2-11

45.7 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 2, Rep: 9, Tree: 14 > FP3
Notes: Brazil_Selections_Poss_grandparent
 Mars, 2018

29._PA_150_[PER] PA_150_[PER]_Fld#_173_Plt#_1

39.7 %
34 shared markers

USDA-TARS, United States of America
Location: Field: 173, Tree: 1
 Mars, 2018

30._PA_150_[PER] RUQ_1731

38.6 %
35 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

31._PA_150_[PER] GC-01-34-2-11

34.3 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 2, Rep: 9, Tree: 7 > FP4
Notes: Brazil_Selections_Poss_grandparent/ (offtype, similar to offtype EET 272, parcel 3311)
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP998 15TcSNP994
16TcSNP953 17TcSNP929 18TcSNP917 19TcSNP891 20TcSNP872
21TcSNP723 22TcSNP645 23TcSNP619 24TcSNP591 25TcSNP577
26TcSNP560 27TcSNP534 28TcSNP529 29TcSNP469 30TcSNP429
31TcSNP372 32TcSNP242 33TcSNP230 34TcSNP226 35TcSNP193
36TcSNP151 37TcSNP150 38TcSNP144 39TcSNP32 40TcSNP25