SNP Profiles of PA 137 [PER]   View Data

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 Key

 1234567891011121314
_Input profile
CCGGCCCTTTACCTTTCCCCAAGGCCAG
1._PA_137_[PER]
CCGGCCCTTTACCTTTCCCCAAGGCCAG
2._GC-05-009-1-09
CCGGCCCTTTACCTTTCCCCAAGGCCAG
3._GC-05-009-1-09
CCGGCCCTTTACCTTTCCCCAAGGCCAG
4._GC-05-009-1-09
CCGGCCCTTTACCTTTCCCCAAGGCCAG
5._GC-05-009-1-09
CCGGCCCTTTACCTTTCCCCAAGGCCAG
6._GC-05-009-1-09
CCGGCCCTTTACCTTTCCCCAAGGCCAG
7._PA_137_[PER]
CCGGCCCTTTACCTTTCCCCAAGGCCAG
8._PA_137_[PER]
CCGGCCCTTTACCTTTCCCCAAGGCCAG
9._PA_137_[PER]
CCGGCCCTTTACCTTTCCCCAAGGCCAG
10._PA_137_[PER]
CCGGCCCTTTACCTTTCCCCAAGGCCAG
11._PA_137_[PER]
CCGGCCCTTTACCTTTCCCCAAGGCCAG
12._PA_137_[PER]
CCGGCCCTTTACCTTTCCCCAAGGCCAG
13._PA_137_[PER]
CCGGCCCTTTACCTTTCCCCAAGGCCAG
14._PA_137_[PER]
CCGGCCCTTTACCTTTCCCCAAGGCCAG
15._GC-05-117-3-19
CCGGCCCTTTACCTTTCCCCAAGGCCAG
16._GC-05-117-3-19
CCGGCCCTTTACCTTTCCCCAAGGCCAG
17._GC-05-117-3-19
CCGGCCCTTTACCTTTCCCCAAGGCCAG
18._GC-05-117-3-19
CCGGCCCTTTACCTTTCCCCAAGGCCAG
19._GC-05-117-3-19
CCGGCCCTTTACCTTTCCCCAAGGCCAG
20._RUQ_1081
__GGCCCT______TT________CCAG
21._RUQ_1081
CCGGCCCTTTACCTTTCCCCAAGGCCAG
22._PA_137_[PER]
CCGGCCCTTTACCTTTCCCCAAGGCCAG
23._PA_137_[PER]
CCGGCCCTTTACCTTTCCCCAAGGCCAG
24._PA_137_[PER]
CCGGCCCTTTACCTTTCC__AAGGCCAG
25._PA_137_[PER]
CCGGCCCTTTACCTTTCC__AAGGCCAG
26._RUQ_36
______CT__________________AG
27._RUQ_36
CCGGCCCTTTACCTTTCCCCAAGGCCAG
28._RUQ_1081
CCGGCCCTTTACCTTTCCCCAAGGCCAG
29._RUQ_1081
____CC________TT__CC__GG__AG
30._RUQ_36
____CC________TT__CC__GG__AG
31._RUQ_36
CCAGCGCTTTACCTGTCC__AAGG__AG
32._PA137[PER]
____GG__________________CC__
33._RUQ_36
GGGGGGAGAAACAGAA____AAGGGGAG
34._MITC-000400
GGGGGGAGAAACAGAA____AAGGGGAG
35._PA_137_[PER]_Fld#_201_Plt#_2
GGGGGGAGAAACAGAA____AAGGGGAG
 1516171819202122232425262728
_Input profile
CTAACGCTCCGGGGAGTTCCCGGGCTAC
1._PA_137_[PER]
CTAACGCTCCGGGGAGTTCCCGGGCTAC
2._GC-05-009-1-09
CTAACGCTCCGGGGAGTTCCCGGGCTAC
3._GC-05-009-1-09
CTAACGCTCCGGGGAGTTCCCGGGCTAC
4._GC-05-009-1-09
CTAACGCTCCGGGGAGTTCCCGGGCTAC
5._GC-05-009-1-09
CTAACGCTCCGGGGAGTTCCCGGGCTAC
6._GC-05-009-1-09
CTAACGCTCCGGGGAGTTCCCGGGCTAC
7._PA_137_[PER]
CTAACGCTCCGGGGAGTTCCCGGGCTAC
8._PA_137_[PER]
CTAACGCTCCGGGGAGTTCCCGGGCTAC
9._PA_137_[PER]
CTAACGCTCCGGGGAGTTCCCGGGCTAC
10._PA_137_[PER]
CTAACGCTCCGGGGAGTTCCCGGGCTAC
11._PA_137_[PER]
CTAACGCTCCGGGGAGTTCCCGGGCTAC
12._PA_137_[PER]
CTAACGCTCCGGGGAGTTCCCGGGCTAC
13._PA_137_[PER]
CTAACGCTCCGGGGAGTTCCCGGGCTAC
14._PA_137_[PER]
CTAACGCTCCGGGGAGTTCCCGGGCTAC
15._GC-05-117-3-19
CTAACGCTCCGGGGAGTTCCCGGGCTAC
16._GC-05-117-3-19
CTAACGCTCCGGGGAGTTCCCGGGCTAC
17._GC-05-117-3-19
CTAACGCTCCGGGGAGTTCCCGGGCTAC
18._GC-05-117-3-19
CTAACGCTCCGGGGAGTTCCCGGGCTAC
19._GC-05-117-3-19
CTAACGCTCCGGGGAGTTCCCGGGCTAC
20._RUQ_1081
________CCGGGG__TTCCCGGGCTAC
21._RUQ_1081
CTAACGCTCCGGGGAATTCCCGGGCTAC
22._PA_137_[PER]
CTAACGCTCCGGGGAATTCCCGGGCTAC
23._PA_137_[PER]
CTAACGCTCCGG__AATTCCCGGGCTAC
24._PA_137_[PER]
CTAACGCTCCGGGGAATTCCCGGGCTAC
25._PA_137_[PER]
CTAACGCTCCGGGGAATTCCCGGGCTAC
26._RUQ_36
________CC__GG______CGGGCTAC
27._RUQ_36
CTAACGCTCCGGGGAACTCCCGGGCTAC
28._RUQ_1081
CTAACGCTCCGGGGAACTCCCGGGCTAC
29._RUQ_1081
__________GGGGAA__CCCG____AC
30._RUQ_36
__________GGGGAA__CCCG____AA
31._RUQ_36
CTAACGCTCC__GTAATT__CGGGCTAC
32._PA137[PER]
CT______CCCC______CCCG______
33._RUQ_36
AGAACGAGGGCCCC__AACCCGCC__AC
34._MITC-000400
AGAACGAGGGCCCC__AACCCGCC__AC
35._PA_137_[PER]_Fld#_201_Plt#_2
AGAACGAGGGCCCC__AACCCGCC__AC
 293031323334353637383940  
_Input profile
AGGGAACCAGCCAACTGTACATGGX_XX_X
1._PA_137_[PER]
AGGGAACCAGCCAACTGTACATGGX_XX_X
2._GC-05-009-1-09
AGGGAACCAGCCAACTGTACATGGX_XX_X
3._GC-05-009-1-09
AGGGAACCAGCCAACTGTACATGGX_XX_X
4._GC-05-009-1-09
AGGGAACCAGCCAACTGTACATGGX_XX_X
5._GC-05-009-1-09
AGGGAACCAGCCAACTGTACATGGX_XX_X
6._GC-05-009-1-09
AGGGAACCAGCCAACTGTACATGGX_XX_X
7._PA_137_[PER]
AGGGAACCAGCCAACTGTACATGGX_XX_X
8._PA_137_[PER]
AGGGAACCAGCCAACTGTACATGGX_XX_X
9._PA_137_[PER]
AGGGAACCAGCCAACTGTACATGGX_XX_X
10._PA_137_[PER]
AGGGAACCAGCCAACTGTACATGGX_XX_X
11._PA_137_[PER]
AGGGAACCAGCCAACTGTACATGGX_XX_X
12._PA_137_[PER]
AGGGAACCAGCCAACTGTACATGGX_XX_X
13._PA_137_[PER]
AGGGAACCAGCCAACTGTACATGGX_XX_X
14._PA_137_[PER]
AGGGAACCAGCCAACTGTACATGGX_XX_X
15._GC-05-117-3-19
AGGGAACCAGCCAACTGTACATGGX_XX_X
16._GC-05-117-3-19
AGGGAACCAGCCAACTGTACATGGX_XX_X
17._GC-05-117-3-19
AGGGAACCAGCCAACTGTACATGGX_XX_X
18._GC-05-117-3-19
AGGGAACCAGCCAACTGTACATGGX_XX_X
19._GC-05-117-3-19
AGGGAACCAGCCAACTGTACATGGX_XX_X
20._RUQ_1081
AG__AACCAGCCACCTGTAC____X_XX_X
21._RUQ_1081
AGGGAACCAGCCACCTGTACATGGX_XX_X
22._PA_137_[PER]
AGGGAACCAGCCACCTGTACATGGX_XX_X
23._PA_137_[PER]
AGGGAACCAG__ACCTGTACATGGX_XX_X
24._PA_137_[PER]
AGGGAACCAG__ACCTGTACATGGX_XX_X
25._PA_137_[PER]
AGGGAACCAG__ACCTGTACATGGX_XX_X
26._RUQ_36
AG__AA__AG__AC__GTAC____X_XX_X
27._RUQ_36
AGGGAACCAGCCACCTGTACATGGX_XX_X
28._RUQ_1081
AGGGAACCAGCCACCTGTACATGGX_XX_X
29._RUQ_1081
________AG________AC____X_XX_X
30._RUQ_36
________AG________AC____X_XX_X
31._RUQ_36
AGGGAA__AGCGACCTGTACATGGX_XX_X
32._PA137[PER]
____AA__AGGGACCT__AC____X_XX_X
33._RUQ_36
__GGAAGGAGGGACAGACACATGGX_XX_X
34._MITC-000400
__GGAAGGAGGGACAGACACATGGX_XX_X
35._PA_137_[PER]_Fld#_201_Plt#_2
__GGAAGGAGGGACAGACACATGGX_XX_X

Input profile: PA_137_[PER]

 
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Mars Center for Cocoa Science, Brazil
Location: 5319 2
 Dapeng Zhang, 2016

1._PA_137_[PER]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5319 3
 Dapeng Zhang, 2016

2._PA_137_[PER] GC-05-009-1-09

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

3._PA_137_[PER] GC-05-009-1-09

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

4._PA_137_[PER] GC-05-009-1-09

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP2
 Mars, 2018

5._PA_137_[PER] GC-05-009-1-09

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

6._PA_137_[PER] GC-05-009-1-09

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

7._PA_137_[PER]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5109 2
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

8._PA_137_[PER]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5109 4
 Dapeng Zhang, 2016

9._PA_137_[PER]

identical
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 5109 5
 Dapeng Zhang, 2016

10._PA_137_[PER]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5109 1 > FP
 Dapeng Zhang, 2016

11._PA_137_[PER]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5109 3 > FP
 Dapeng Zhang, 2016

12._PA_137_[PER]

identical
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 5319 4
 Dapeng Zhang, 2016

13._PA_137_[PER]

identical
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 5319 5
 Dapeng Zhang, 2016

14._PA_137_[PER]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5319 1 > FP
 Dapeng Zhang, 2016

15._PA_137_[PER] GC-05-117-3-19

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP3
 Mars, 2018

16._PA_137_[PER] GC-05-117-3-19

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

17._PA_137_[PER] GC-05-117-3-19

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

18._PA_137_[PER] GC-05-117-3-19

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

19._PA_137_[PER] GC-05-117-3-19

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

20._PA_137_[PER] RUQ_1081

97.9 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

21._PA_137_[PER] RUQ_1081

97.5 %
40 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

22._PA_137_[PER]

97.5 %
40 shared markers

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Malaysian Cocoa Board (MCB), Malaysia
Location: Plot 1 - Row 7 C0181 28
 Dapeng Zhang, 2016

23._PA_137_[PER]

97.4 %
38 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 5A D274 T1
 Dapeng Zhang, 2014

24._PA_137_[PER]

97.4 %
38 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D430
 Dapeng Zhang, 2016

25._PA_137_[PER]

97.4 %
38 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 5A D274 T1
 Dapeng Zhang, 2016

26._PA_137_[PER] RUQ_36

96.4 %
14 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

27._PA_137_[PER] RUQ_36

96.3 %
40 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

28._PA_137_[PER] RUQ_1081

96.3 %
40 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

29._PA_137_[PER] RUQ_1081

96.2 %
13 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

30._PA_137_[PER] RUQ_36

92.3 %
13 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

31._PA_137_[PER] RUQ_36

90 %
35 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

32._PA_137_[PER] PA137[PER]

73.1 %
13 shared markers

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Center for Forestry Research and Technology Transfer, Vietnam
Location: CEFORTT
 Jocelyn De Wever et al., 2019

33._PA_137_[PER] RUQ_36

47.1 %
35 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

34._PA_137_[PER] MITC-000400

47.1 %
35 shared markers

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USDA-SHRS, United States of America
 Mars, 2018

35._PA_137_[PER] PA_137_[PER]_Fld#_201_Plt#_2

47.1 %
35 shared markers

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USDA-TARS, United States of America
Location: Field: 201, Tree: 2
 Mars, 2018

 

  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP998 15TcSNP994
16TcSNP953 17TcSNP929 18TcSNP917 19TcSNP891 20TcSNP872
21TcSNP723 22TcSNP645 23TcSNP619 24TcSNP591 25TcSNP577
26TcSNP560 27TcSNP534 28TcSNP529 29TcSNP469 30TcSNP429
31TcSNP372 32TcSNP242 33TcSNP230 34TcSNP226 35TcSNP193
36TcSNP151 37TcSNP150 38TcSNP144 39TcSNP32 40TcSNP25