SNP Profiles of PA 137 [PER]   View Data

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 Key

 1234567891011121314
_Input profile
CCGGCCCTTTACCTTTCCCCAAGGCCAG
1._RUQ_1081
CCGGCCCTTTACCTTTCCCCAAGGCCAG
2._PA_137_[PER]
CCGGCCCTTTACCTTTCCCCAAGGCCAG
3._PA_137_[PER]
CCGGCCCTTTACCTTTCC__AAGGCCAG
4._PA_137_[PER]
CCGGCCCTTTACCTTTCC__AAGGCCAG
5._RUQ_1081
__GGCCCT______TT________CCAG
6._RUQ_36
______CT__________________AG
7._RUQ_1081
____CC________TT__CC__GG__AG
8._RUQ_36
CCGGCCCTTTACCTTTCCCCAAGGCCAG
9._RUQ_1081
CCGGCCCTTTACCTTTCCCCAAGGCCAG
10._PA_137_[PER]
CCGGCCCTTTACCTTTCCCCAAGGCCAG
11._GC-05-009-1-09
CCGGCCCTTTACCTTTCCCCAAGGCCAG
12._GC-05-009-1-09
CCGGCCCTTTACCTTTCCCCAAGGCCAG
13._GC-05-009-1-09
CCGGCCCTTTACCTTTCCCCAAGGCCAG
14._GC-05-009-1-09
CCGGCCCTTTACCTTTCCCCAAGGCCAG
15._GC-05-009-1-09
CCGGCCCTTTACCTTTCCCCAAGGCCAG
16._PA_137_[PER]
CCGGCCCTTTACCTTTCCCCAAGGCCAG
17._PA_137_[PER]
CCGGCCCTTTACCTTTCCCCAAGGCCAG
18._PA_137_[PER]
CCGGCCCTTTACCTTTCCCCAAGGCCAG
19._PA_137_[PER]
CCGGCCCTTTACCTTTCCCCAAGGCCAG
20._PA_137_[PER]
CCGGCCCTTTACCTTTCCCCAAGGCCAG
21._PA_137_[PER]
CCGGCCCTTTACCTTTCCCCAAGGCCAG
22._PA_137_[PER]
CCGGCCCTTTACCTTTCCCCAAGGCCAG
23._PA_137_[PER]
CCGGCCCTTTACCTTTCCCCAAGGCCAG
24._PA_137_[PER]
CCGGCCCTTTACCTTTCCCCAAGGCCAG
25._GC-05-117-3-19
CCGGCCCTTTACCTTTCCCCAAGGCCAG
26._GC-05-117-3-19
CCGGCCCTTTACCTTTCCCCAAGGCCAG
27._GC-05-117-3-19
CCGGCCCTTTACCTTTCCCCAAGGCCAG
28._GC-05-117-3-19
CCGGCCCTTTACCTTTCCCCAAGGCCAG
29._GC-05-117-3-19
CCGGCCCTTTACCTTTCCCCAAGGCCAG
30._RUQ_36
____CC________TT__CC__GG__AG
31._RUQ_36
CCAGCGCTTTACCTGTCC__AAGG__AG
32._PA137[PER]
____GG__________________CC__
33._RUQ_36
GGGGGGAGAAACAGAA____AAGGGGAG
34._MITC-000400
GGGGGGAGAAACAGAA____AAGGGGAG
35._PA_137_[PER]_Fld#_201_Plt#_2
GGGGGGAGAAACAGAA____AAGGGGAG
 1516171819202122232425262728
_Input profile
CTAACGCTCCGGGGAATTCCCGGGCTAC
1._RUQ_1081
CTAACGCTCCGGGGAATTCCCGGGCTAC
2._PA_137_[PER]
CTAACGCTCCGG__AATTCCCGGGCTAC
3._PA_137_[PER]
CTAACGCTCCGGGGAATTCCCGGGCTAC
4._PA_137_[PER]
CTAACGCTCCGGGGAATTCCCGGGCTAC
5._RUQ_1081
________CCGGGG__TTCCCGGGCTAC
6._RUQ_36
________CC__GG______CGGGCTAC
7._RUQ_1081
__________GGGGAA__CCCG____AC
8._RUQ_36
CTAACGCTCCGGGGAACTCCCGGGCTAC
9._RUQ_1081
CTAACGCTCCGGGGAACTCCCGGGCTAC
10._PA_137_[PER]
CTAACGCTCCGGGGAGTTCCCGGGCTAC
11._GC-05-009-1-09
CTAACGCTCCGGGGAGTTCCCGGGCTAC
12._GC-05-009-1-09
CTAACGCTCCGGGGAGTTCCCGGGCTAC
13._GC-05-009-1-09
CTAACGCTCCGGGGAGTTCCCGGGCTAC
14._GC-05-009-1-09
CTAACGCTCCGGGGAGTTCCCGGGCTAC
15._GC-05-009-1-09
CTAACGCTCCGGGGAGTTCCCGGGCTAC
16._PA_137_[PER]
CTAACGCTCCGGGGAGTTCCCGGGCTAC
17._PA_137_[PER]
CTAACGCTCCGGGGAGTTCCCGGGCTAC
18._PA_137_[PER]
CTAACGCTCCGGGGAGTTCCCGGGCTAC
19._PA_137_[PER]
CTAACGCTCCGGGGAGTTCCCGGGCTAC
20._PA_137_[PER]
CTAACGCTCCGGGGAGTTCCCGGGCTAC
21._PA_137_[PER]
CTAACGCTCCGGGGAGTTCCCGGGCTAC
22._PA_137_[PER]
CTAACGCTCCGGGGAGTTCCCGGGCTAC
23._PA_137_[PER]
CTAACGCTCCGGGGAGTTCCCGGGCTAC
24._PA_137_[PER]
CTAACGCTCCGGGGAGTTCCCGGGCTAC
25._GC-05-117-3-19
CTAACGCTCCGGGGAGTTCCCGGGCTAC
26._GC-05-117-3-19
CTAACGCTCCGGGGAGTTCCCGGGCTAC
27._GC-05-117-3-19
CTAACGCTCCGGGGAGTTCCCGGGCTAC
28._GC-05-117-3-19
CTAACGCTCCGGGGAGTTCCCGGGCTAC
29._GC-05-117-3-19
CTAACGCTCCGGGGAGTTCCCGGGCTAC
30._RUQ_36
__________GGGGAA__CCCG____AA
31._RUQ_36
CTAACGCTCC__GTAATT__CGGGCTAC
32._PA137[PER]
CT______CCCC______CCCG______
33._RUQ_36
AGAACGAGGGCCCC__AACCCGCC__AC
34._MITC-000400
AGAACGAGGGCCCC__AACCCGCC__AC
35._PA_137_[PER]_Fld#_201_Plt#_2
AGAACGAGGGCCCC__AACCCGCC__AC
 293031323334353637383940  
_Input profile
AGGGAACCAGCCACCTGTACATGGX_XX_X
1._RUQ_1081
AGGGAACCAGCCACCTGTACATGGX_XX_X
2._PA_137_[PER]
AGGGAACCAG__ACCTGTACATGGX_XX_X
3._PA_137_[PER]
AGGGAACCAG__ACCTGTACATGGX_XX_X
4._PA_137_[PER]
AGGGAACCAG__ACCTGTACATGGX_XX_X
5._RUQ_1081
AG__AACCAGCCACCTGTAC____X_XX_X
6._RUQ_36
AG__AA__AG__AC__GTAC____X_XX_X
7._RUQ_1081
________AG________AC____X_XX_X
8._RUQ_36
AGGGAACCAGCCACCTGTACATGGX_XX_X
9._RUQ_1081
AGGGAACCAGCCACCTGTACATGGX_XX_X
10._PA_137_[PER]
AGGGAACCAGCCAACTGTACATGGX_XX_X
11._GC-05-009-1-09
AGGGAACCAGCCAACTGTACATGGX_XX_X
12._GC-05-009-1-09
AGGGAACCAGCCAACTGTACATGGX_XX_X
13._GC-05-009-1-09
AGGGAACCAGCCAACTGTACATGGX_XX_X
14._GC-05-009-1-09
AGGGAACCAGCCAACTGTACATGGX_XX_X
15._GC-05-009-1-09
AGGGAACCAGCCAACTGTACATGGX_XX_X
16._PA_137_[PER]
AGGGAACCAGCCAACTGTACATGGX_XX_X
17._PA_137_[PER]
AGGGAACCAGCCAACTGTACATGGX_XX_X
18._PA_137_[PER]
AGGGAACCAGCCAACTGTACATGGX_XX_X
19._PA_137_[PER]
AGGGAACCAGCCAACTGTACATGGX_XX_X
20._PA_137_[PER]
AGGGAACCAGCCAACTGTACATGGX_XX_X
21._PA_137_[PER]
AGGGAACCAGCCAACTGTACATGGX_XX_X
22._PA_137_[PER]
AGGGAACCAGCCAACTGTACATGGX_XX_X
23._PA_137_[PER]
AGGGAACCAGCCAACTGTACATGGX_XX_X
24._PA_137_[PER]
AGGGAACCAGCCAACTGTACATGGX_XX_X
25._GC-05-117-3-19
AGGGAACCAGCCAACTGTACATGGX_XX_X
26._GC-05-117-3-19
AGGGAACCAGCCAACTGTACATGGX_XX_X
27._GC-05-117-3-19
AGGGAACCAGCCAACTGTACATGGX_XX_X
28._GC-05-117-3-19
AGGGAACCAGCCAACTGTACATGGX_XX_X
29._GC-05-117-3-19
AGGGAACCAGCCAACTGTACATGGX_XX_X
30._RUQ_36
________AG________AC____X_XX_X
31._RUQ_36
AGGGAA__AGCGACCTGTACATGGX_XX_X
32._PA137[PER]
____AA__AGGGACCT__AC____X_XX_X
33._RUQ_36
__GGAAGGAGGGACAGACACATGGX_XX_X
34._MITC-000400
__GGAAGGAGGGACAGACACATGGX_XX_X
35._PA_137_[PER]_Fld#_201_Plt#_2
__GGAAGGAGGGACAGACACATGGX_XX_X

Input profile: PA_137_[PER]

 
Malaysian Cocoa Board (MCB), Malaysia
Location: Plot 1 - Row 7 C0181 28
 Dapeng Zhang, 2016

1._PA_137_[PER] RUQ_1081

identical
40 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

2._PA_137_[PER]

identical
38 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 5A D274 T1
 Dapeng Zhang, 2014

3._PA_137_[PER]

identical
38 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D430
 Dapeng Zhang, 2016

4._PA_137_[PER]

identical
38 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 5A D274 T1
 Dapeng Zhang, 2016

5._PA_137_[PER] RUQ_1081

identical
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

6._PA_137_[PER] RUQ_36

identical
14 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

7._PA_137_[PER] RUQ_1081

identical
13 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

8._PA_137_[PER] RUQ_36

98.8 %
40 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

9._PA_137_[PER] RUQ_1081

98.8 %
40 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

10._PA_137_[PER]

97.5 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5319 3
 Dapeng Zhang, 2016

11._PA_137_[PER] GC-05-009-1-09

97.5 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

12._PA_137_[PER] GC-05-009-1-09

97.5 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

13._PA_137_[PER] GC-05-009-1-09

97.5 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP2
 Mars, 2018

14._PA_137_[PER] GC-05-009-1-09

97.5 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

15._PA_137_[PER] GC-05-009-1-09

97.5 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

16._PA_137_[PER]

97.5 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5109 2
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

17._PA_137_[PER]

97.5 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5109 4
 Dapeng Zhang, 2016

18._PA_137_[PER]

97.5 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5109 5
 Dapeng Zhang, 2016

19._PA_137_[PER]

97.5 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5109 1 > FP
 Dapeng Zhang, 2016

20._PA_137_[PER]

97.5 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5109 3 > FP
 Dapeng Zhang, 2016

21._PA_137_[PER]

97.5 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5319 2
 Dapeng Zhang, 2016

22._PA_137_[PER]

97.5 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5319 4
 Dapeng Zhang, 2016

23._PA_137_[PER]

97.5 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5319 5
 Dapeng Zhang, 2016

24._PA_137_[PER]

97.5 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5319 1 > FP
 Dapeng Zhang, 2016

25._PA_137_[PER] GC-05-117-3-19

97.5 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP3
 Mars, 2018

26._PA_137_[PER] GC-05-117-3-19

97.5 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

27._PA_137_[PER] GC-05-117-3-19

97.5 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

28._PA_137_[PER] GC-05-117-3-19

97.5 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

29._PA_137_[PER] GC-05-117-3-19

97.5 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

30._PA_137_[PER] RUQ_36

96.2 %
13 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

31._PA_137_[PER] RUQ_36

92.9 %
35 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

32._PA_137_[PER] PA137[PER]

76.9 %
13 shared markers

Center for Forestry Research and Technology Transfer, Vietnam
Location: CEFORTT
 Jocelyn De Wever et al., 2019

33._PA_137_[PER] RUQ_36

48.6 %
35 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

34._PA_137_[PER] MITC-000400

48.6 %
35 shared markers

USDA-SHRS, United States of America
 Mars, 2018

35._PA_137_[PER] PA_137_[PER]_Fld#_201_Plt#_2

48.6 %
35 shared markers

USDA-TARS, United States of America
Location: Field: 201, Tree: 2
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP998 15TcSNP994
16TcSNP953 17TcSNP929 18TcSNP917 19TcSNP891 20TcSNP872
21TcSNP723 22TcSNP645 23TcSNP619 24TcSNP591 25TcSNP577
26TcSNP560 27TcSNP534 28TcSNP529 29TcSNP469 30TcSNP429
31TcSNP372 32TcSNP242 33TcSNP230 34TcSNP226 35TcSNP193
36TcSNP151 37TcSNP150 38TcSNP144 39TcSNP32 40TcSNP25