SNP Profiles of PA 137 [PER]   View Data

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 Key

 1234567891011121314
_Input profile
CCGGCCCTTTACCTTTCCAAGGCCAGCT
1._RUQ_1081
CCGGCCCTTTACCTTTCCAAGGCCAGCT
2._PA_137_[PER]
CCGGCCCTTTACCTTTCCAAGGCCAGCT
3._PA_137_[PER]
CCGGCCCTTTACCTTTCCAAGGCCAGCT
4._PA_137_[PER]
CCGGCCCTTTACCTTTCCAAGGCCAGCT
5._RUQ_1081
__GGCCCT______TT______CCAG__
6._RUQ_36
______CT________________AG__
7._RUQ_1081
____CC________TT____GG__AG__
8._RUQ_36
CCGGCCCTTTACCTTTCCAAGGCCAGCT
9._RUQ_1081
CCGGCCCTTTACCTTTCCAAGGCCAGCT
10._PA_137_[PER]
CCGGCCCTTTACCTTTCCAAGGCCAGCT
11._GC-05-009-1-09
CCGGCCCTTTACCTTTCCAAGGCCAGCT
12._GC-05-009-1-09
CCGGCCCTTTACCTTTCCAAGGCCAGCT
13._GC-05-009-1-09
CCGGCCCTTTACCTTTCCAAGGCCAGCT
14._GC-05-009-1-09
CCGGCCCTTTACCTTTCCAAGGCCAGCT
15._GC-05-009-1-09
CCGGCCCTTTACCTTTCCAAGGCCAGCT
16._PA_137_[PER]
CCGGCCCTTTACCTTTCCAAGGCCAGCT
17._PA_137_[PER]
CCGGCCCTTTACCTTTCCAAGGCCAGCT
18._PA_137_[PER]
CCGGCCCTTTACCTTTCCAAGGCCAGCT
19._PA_137_[PER]
CCGGCCCTTTACCTTTCCAAGGCCAGCT
20._PA_137_[PER]
CCGGCCCTTTACCTTTCCAAGGCCAGCT
21._PA_137_[PER]
CCGGCCCTTTACCTTTCCAAGGCCAGCT
22._PA_137_[PER]
CCGGCCCTTTACCTTTCCAAGGCCAGCT
23._PA_137_[PER]
CCGGCCCTTTACCTTTCCAAGGCCAGCT
24._PA_137_[PER]
CCGGCCCTTTACCTTTCCAAGGCCAGCT
25._GC-05-117-3-19
CCGGCCCTTTACCTTTCCAAGGCCAGCT
26._GC-05-117-3-19
CCGGCCCTTTACCTTTCCAAGGCCAGCT
27._GC-05-117-3-19
CCGGCCCTTTACCTTTCCAAGGCCAGCT
28._GC-05-117-3-19
CCGGCCCTTTACCTTTCCAAGGCCAGCT
29._GC-05-117-3-19
CCGGCCCTTTACCTTTCCAAGGCCAGCT
30._RUQ_36
____CC________TT____GG__AG__
31._RUQ_36
CCAGCGCTTTACCTGTCCAAGG__AGCT
32._PA137[PER]
____GG________________CC__CT
33._RUQ_36
GGGGGGAGAAACAGAA__AAGGGGAGAG
34._MITC-000400
GGGGGGAGAAACAGAA__AAGGGGAGAG
35._PA_137_[PER]_Fld#_201_Plt#_2
GGGGGGAGAAACAGAA__AAGGGGAGAG
 1516171819202122232425262728
_Input profile
AACGCTCCGGGGAATTCCCGGGCTACAG
1._RUQ_1081
AACGCTCCGGGGAATTCCCGGGCTACAG
2._PA_137_[PER]
AACGCTCCGGGGAATTCCCGGGCTACAG
3._PA_137_[PER]
AACGCTCCGGGGAATTCCCGGGCTACAG
4._PA_137_[PER]
AACGCTCCGG__AATTCCCGGGCTACAG
5._RUQ_1081
______CCGGGG__TTCCCGGGCTACAG
6._RUQ_36
______CC__GG______CGGGCTACAG
7._RUQ_1081
________GGGGAA__CCCG____AC__
8._RUQ_36
AACGCTCCGGGGAACTCCCGGGCTACAG
9._RUQ_1081
AACGCTCCGGGGAACTCCCGGGCTACAG
10._PA_137_[PER]
AACGCTCCGGGGAGTTCCCGGGCTACAG
11._GC-05-009-1-09
AACGCTCCGGGGAGTTCCCGGGCTACAG
12._GC-05-009-1-09
AACGCTCCGGGGAGTTCCCGGGCTACAG
13._GC-05-009-1-09
AACGCTCCGGGGAGTTCCCGGGCTACAG
14._GC-05-009-1-09
AACGCTCCGGGGAGTTCCCGGGCTACAG
15._GC-05-009-1-09
AACGCTCCGGGGAGTTCCCGGGCTACAG
16._PA_137_[PER]
AACGCTCCGGGGAGTTCCCGGGCTACAG
17._PA_137_[PER]
AACGCTCCGGGGAGTTCCCGGGCTACAG
18._PA_137_[PER]
AACGCTCCGGGGAGTTCCCGGGCTACAG
19._PA_137_[PER]
AACGCTCCGGGGAGTTCCCGGGCTACAG
20._PA_137_[PER]
AACGCTCCGGGGAGTTCCCGGGCTACAG
21._PA_137_[PER]
AACGCTCCGGGGAGTTCCCGGGCTACAG
22._PA_137_[PER]
AACGCTCCGGGGAGTTCCCGGGCTACAG
23._PA_137_[PER]
AACGCTCCGGGGAGTTCCCGGGCTACAG
24._PA_137_[PER]
AACGCTCCGGGGAGTTCCCGGGCTACAG
25._GC-05-117-3-19
AACGCTCCGGGGAGTTCCCGGGCTACAG
26._GC-05-117-3-19
AACGCTCCGGGGAGTTCCCGGGCTACAG
27._GC-05-117-3-19
AACGCTCCGGGGAGTTCCCGGGCTACAG
28._GC-05-117-3-19
AACGCTCCGGGGAGTTCCCGGGCTACAG
29._GC-05-117-3-19
AACGCTCCGGGGAGTTCCCGGGCTACAG
30._RUQ_36
________GGGGAA__CCCG____AA__
31._RUQ_36
AACGCTCC__GTAATT__CGGGCTACAG
32._PA137[PER]
______CCCC______CCCG________
33._RUQ_36
AACGAGGGCCCC__AACCCGCC__AC__
34._MITC-000400
AACGAGGGCCCC__AACCCGCC__AC__
35._PA_137_[PER]_Fld#_201_Plt#_2
AACGAGGGCCCC__AACCCGCC__AC__
 29303132333435363738    
_Input profile
GGAACCAGACCTGTACATGGX_XX_XX_XX_X
1._RUQ_1081
GGAACCAGACCTGTACATGGX_XX_XX_XX_X
2._PA_137_[PER]
GGAACCAGACCTGTACATGGX_XX_XX_XX_X
3._PA_137_[PER]
GGAACCAGACCTGTACATGGX_XX_XX_XX_X
4._PA_137_[PER]
GGAACCAGACCTGTACATGGX_XX_XX_XX_X
5._RUQ_1081
__AACCAGACCTGTAC____X_XX_XX_XX_X
6._RUQ_36
__AA__AGAC__GTAC____X_XX_XX_XX_X
7._RUQ_1081
______AG______AC____X_XX_XX_XX_X
8._RUQ_36
GGAACCAGACCTGTACATGGX_XX_XX_XX_X
9._RUQ_1081
GGAACCAGACCTGTACATGGX_XX_XX_XX_X
10._PA_137_[PER]
GGAACCAGAACTGTACATGGX_XX_XX_XX_X
11._GC-05-009-1-09
GGAACCAGAACTGTACATGGX_XX_XX_XX_X
12._GC-05-009-1-09
GGAACCAGAACTGTACATGGX_XX_XX_XX_X
13._GC-05-009-1-09
GGAACCAGAACTGTACATGGX_XX_XX_XX_X
14._GC-05-009-1-09
GGAACCAGAACTGTACATGGX_XX_XX_XX_X
15._GC-05-009-1-09
GGAACCAGAACTGTACATGGX_XX_XX_XX_X
16._PA_137_[PER]
GGAACCAGAACTGTACATGGX_XX_XX_XX_X
17._PA_137_[PER]
GGAACCAGAACTGTACATGGX_XX_XX_XX_X
18._PA_137_[PER]
GGAACCAGAACTGTACATGGX_XX_XX_XX_X
19._PA_137_[PER]
GGAACCAGAACTGTACATGGX_XX_XX_XX_X
20._PA_137_[PER]
GGAACCAGAACTGTACATGGX_XX_XX_XX_X
21._PA_137_[PER]
GGAACCAGAACTGTACATGGX_XX_XX_XX_X
22._PA_137_[PER]
GGAACCAGAACTGTACATGGX_XX_XX_XX_X
23._PA_137_[PER]
GGAACCAGAACTGTACATGGX_XX_XX_XX_X
24._PA_137_[PER]
GGAACCAGAACTGTACATGGX_XX_XX_XX_X
25._GC-05-117-3-19
GGAACCAGAACTGTACATGGX_XX_XX_XX_X
26._GC-05-117-3-19
GGAACCAGAACTGTACATGGX_XX_XX_XX_X
27._GC-05-117-3-19
GGAACCAGAACTGTACATGGX_XX_XX_XX_X
28._GC-05-117-3-19
GGAACCAGAACTGTACATGGX_XX_XX_XX_X
29._GC-05-117-3-19
GGAACCAGAACTGTACATGGX_XX_XX_XX_X
30._RUQ_36
______AG______AC____X_XX_XX_XX_X
31._RUQ_36
GGAA__AGACCTGTACATGGX_XX_XX_XX_X
32._PA137[PER]
__AA__AGACCT__AC____X_XX_XX_XX_X
33._RUQ_36
GGAAGGAGACAGACACATGGX_XX_XX_XX_X
34._MITC-000400
GGAAGGAGACAGACACATGGX_XX_XX_XX_X
35._PA_137_[PER]_Fld#_201_Plt#_2
GGAAGGAGACAGACACATGGX_XX_XX_XX_X

Input profile: PA_137_[PER]

 
International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D430
 Dapeng Zhang, 2016

1._PA_137_[PER] RUQ_1081

identical
38 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

2._PA_137_[PER]

identical
38 shared markers

Malaysian Cocoa Board (MCB), Malaysia
Location: Plot 1 - Row 7 C0181 28
 Dapeng Zhang, 2016

3._PA_137_[PER]

identical
38 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 5A D274 T1
 Dapeng Zhang, 2016

4._PA_137_[PER]

identical
37 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 5A D274 T1
 Dapeng Zhang, 2014

5._PA_137_[PER] RUQ_1081

identical
23 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

6._PA_137_[PER] RUQ_36

identical
14 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

7._PA_137_[PER] RUQ_1081

identical
12 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

8._PA_137_[PER] RUQ_36

98.7 %
38 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

9._PA_137_[PER] RUQ_1081

98.7 %
38 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

10._PA_137_[PER]

97.4 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5319 3
 Dapeng Zhang, 2016

11._PA_137_[PER] GC-05-009-1-09

97.4 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

12._PA_137_[PER] GC-05-009-1-09

97.4 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

13._PA_137_[PER] GC-05-009-1-09

97.4 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP2
 Mars, 2018

14._PA_137_[PER] GC-05-009-1-09

97.4 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

15._PA_137_[PER] GC-05-009-1-09

97.4 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

16._PA_137_[PER]

97.4 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5109 2
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

17._PA_137_[PER]

97.4 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5109 4
 Dapeng Zhang, 2016

18._PA_137_[PER]

97.4 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5109 5
 Dapeng Zhang, 2016

19._PA_137_[PER]

97.4 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5109 1 > FP
 Dapeng Zhang, 2016

20._PA_137_[PER]

97.4 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5109 3 > FP
 Dapeng Zhang, 2016

21._PA_137_[PER]

97.4 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5319 2
 Dapeng Zhang, 2016

22._PA_137_[PER]

97.4 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5319 4
 Dapeng Zhang, 2016

23._PA_137_[PER]

97.4 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5319 5
 Dapeng Zhang, 2016

24._PA_137_[PER]

97.4 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5319 1 > FP
 Dapeng Zhang, 2016

25._PA_137_[PER] GC-05-117-3-19

97.4 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP3
 Mars, 2018

26._PA_137_[PER] GC-05-117-3-19

97.4 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

27._PA_137_[PER] GC-05-117-3-19

97.4 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

28._PA_137_[PER] GC-05-117-3-19

97.4 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

29._PA_137_[PER] GC-05-117-3-19

97.4 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

30._PA_137_[PER] RUQ_36

95.8 %
12 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

31._PA_137_[PER] RUQ_36

94.1 %
34 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

32._PA_137_[PER] PA137[PER]

83.3 %
12 shared markers

Center for Forestry Research and Technology Transfer, Vietnam
Location: CEFORTT
 Jocelyn De Wever et al., 2019

33._PA_137_[PER] RUQ_36

50 %
34 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

34._PA_137_[PER] MITC-000400

50 %
34 shared markers

USDA-SHRS, United States of America
 Mars, 2018

35._PA_137_[PER] PA_137_[PER]_Fld#_201_Plt#_2

50 %
34 shared markers

USDA-TARS, United States of America
Location: Field: 201, Tree: 2
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1075
11TcSNP1062 12TcSNP1060 13TcSNP998 14TcSNP994 15TcSNP953
16TcSNP929 17TcSNP917 18TcSNP891 19TcSNP872 20TcSNP723
21TcSNP645 22TcSNP619 23TcSNP591 24TcSNP577 25TcSNP560
26TcSNP534 27TcSNP529 28TcSNP469 29TcSNP429 30TcSNP372
31TcSNP242 32TcSNP230 33TcSNP193 34TcSNP151 35TcSNP150
36TcSNP144 37TcSNP32 38TcSNP25