SNP Profiles of PA 121 [PER] View Data

Show/Hide Profiles

	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	CT	AG	CG	CT	CT	AA	CT	TT	CC	CT	AT	AG	CC	AG
1._GC-05-011-1-11	CT	AG	CG	CT	CT	AA	CT	TT	CC	CT	AT	AG	CC	AG
2._RUQ_1059	__	GG	GG	CT	__	__	__	TT	__	__	__	__	CC	AG
3._GC-05-011-1-11	CT	GG	GG	CT	TT	AC	TT	TT	CC	CC	AA	GG	CC	AG
4._PA_121_[PER]	CT	GG	GG	CT	TT	AC	TT	TT	CC	CC	AA	GG	CC	AG
5._RUQ_1059	__	__	GG	__	__	__	__	TT	__	CC	__	GG	__	AG
6._GC-05-011-1-11	CT	GG	GG	CT	TT	AC	TT	TT	CC	CC	AA	GG	CC	AG
7._GC-05-011-1-11	CT	GG	GG	CT	TT	AC	TT	TT	CC	CC	AA	GG	CC	AG
8._PA_121_[PER]	CT	GG	GG	CT	TT	AC	TT	TT	CC	CC	AA	GG	CC	AG
9._PA_121_[PER]	CT	GG	GG	CT	TT	AC	TT	TT	CC	CC	AA	GG	CC	AG
10._RUQ_1059	CT	GG	GG	CT	TT	AC	TT	TT	CC	CC	AA	GG	CC	AG
11._PA_121_[PER]	CT	GG	GG	CT	TT	AC	TT	TT	CC	CC	AA	GG	CC	AG
12._PA_121_[PER]	CT	GG	GG	CT	TT	AC	TT	TT	CC	CC	AA	GG	CC	AG
13._PA_121_[PER]	CT	GG	GG	CT	TT	AC	TT	TT	CC	__	AA	GG	CC	AG
14._GC-05-011-1-11	CC	GG	CG	CT	TT	__	CC	GT	TT	CC	TT	AG	CC	AG
15._PA_121_[PER]	CC	GG	CG	CT	TT	__	CC	GT	TT	CC	TT	AG	CC	AG
16._RUQ_1059	__	__	CC	__	__	__	__	__	__	__	__	__	CC	__
17._RUQ_1059	AG	GG	CC	AG	AA	AC	AA	AA	__	__	AA	GG	GG	AG

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	TT	AA	GG	CT	CC	GG	GG	AA	TT	CC	CC	GT	TT	CC
1._GC-05-011-1-11	TT	AA	GG	CT	CC	GG	GG	AA	TT	CC	CC	GT	TT	CC
2._RUQ_1059	__	__	__	__	CC	GG	GG	__	TT	CC	CG	GG	CT	AA
3._GC-05-011-1-11	TT	AA	CG	TT	CC	GG	GG	AA	TT	CC	CG	GG	CT	AA
4._PA_121_[PER]	TT	AA	CG	TT	CC	GG	GG	AA	TT	CC	CG	GG	CT	AA
5._RUQ_1059	__	__	__	__	__	GG	GG	AA	__	CC	CG	__	__	AA
6._GC-05-011-1-11	TT	AA	CG	TT	CC	GG	GG	AA	TT	CC	CG	GG	CT	AA
7._GC-05-011-1-11	TT	AA	CG	TT	CC	GG	GG	AA	TT	CC	CG	GG	CT	AA
8._PA_121_[PER]	TT	AA	CG	TT	CC	GG	GG	AA	TT	CC	CG	GG	CT	AA
9._PA_121_[PER]	TT	AA	CG	TT	CC	GG	GG	AA	TT	CC	CG	GG	CT	AA
10._RUQ_1059	TT	AA	CG	TT	CC	GG	GG	AA	TT	CC	CG	GG	CT	AA
11._PA_121_[PER]	TT	AA	CG	TT	CC	GG	GG	AA	TT	CC	CG	GG	CT	AA
12._PA_121_[PER]	TT	AA	CG	TT	CC	GG	GG	AA	TT	CC	CG	GG	CT	AA
13._PA_121_[PER]	TT	AA	CG	TT	CC	GG	GG	AA	TT	CC	CG	GG	CT	AA
14._GC-05-011-1-11	CT	AA	GG	CT	TT	GG	GT	AA	CC	CC	GG	GT	CT	CC
15._PA_121_[PER]	CT	AA	GG	CT	TT	GG	GT	AA	CC	CC	GG	GT	CT	CC
16._RUQ_1059	TT	__	__	__	CC	CC	__	__	__	CC	CG	__	__	__
17._RUQ_1059	AA	AA	CG	AA	GG	CC	CC	__	AA	CC	CG	CC	__	AA

	29	30	31	32	33	34	35	36	37	38	39	40
_Input profile	AG	AG	AA	CC	AA	CC	AA	TT	TT	CC	TT	CG	X_X	X_X
1._GC-05-011-1-11	AG	AG	AA	CC	AA	CC	AA	TT	TT	CC	TT	CG	X_X	X_X
2._RUQ_1059	AG	__	AA	CC	AA	CC	AA	CC	GT	AC	__	__	X_X	X_X
3._GC-05-011-1-11	AG	GG	AA	CC	AA	CC	AA	__	GT	AC	AT	GG	X_X	X_X
4._PA_121_[PER]	AG	GG	AA	CC	AA	CC	AA	__	GT	AC	AT	GG	X_X	X_X
5._RUQ_1059	__	__	__	__	AA	__	__	__	__	AC	__	__	X_X	X_X
6._GC-05-011-1-11	AG	GG	AA	CC	AA	CC	AA	CC	GT	AC	AT	GG	X_X	X_X
7._GC-05-011-1-11	AG	GG	AA	CC	AA	CC	AA	CC	GT	AC	AT	GG	X_X	X_X
8._PA_121_[PER]	AG	GG	AA	CC	AA	CC	AA	CC	GT	AC	AT	GG	X_X	X_X
9._PA_121_[PER]	AG	GG	AA	CC	AA	CC	AA	CC	GT	AC	AT	GG	X_X	X_X
10._RUQ_1059	AG	GG	AA	CC	AA	CC	AA	CC	GT	AC	AT	GG	X_X	X_X
11._PA_121_[PER]	AG	GG	AA	CC	AA	CC	AA	CC	GT	AC	AT	GG	X_X	X_X
12._PA_121_[PER]	AG	GG	AA	CC	AA	CC	AA	CC	GT	AC	AT	GG	X_X	X_X
13._PA_121_[PER]	AG	GG	AA	CC	AA	__	AA	CC	GT	AC	AT	GG	X_X	X_X
14._GC-05-011-1-11	AA	AG	TT	CC	AA	CC	AA	CT	GT	CC	AA	GG	X_X	X_X
15._PA_121_[PER]	AA	AG	TT	CC	AA	CC	AA	CT	GT	CC	AA	GG	X_X	X_X
16._RUQ_1059	__	__	AA	__	AA	GG	AA	CC	__	AC	__	__	X_X	X_X
17._RUQ_1059	__	GG	AA	GG	AA	GG	AA	GG	AC	AC	AT	GG	X_X	X_X

Input profile: PA_121_[PER]

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5111 4

Dapeng Zhang, 2016

1._PA_121_[PER] GC-05-011-1-11

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

2._PA_121_[PER] RUQ_1059

77.1 %
24 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

3._PA_121_[PER] GC-05-011-1-11

74.4 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5 > FP3

4._PA_121_[PER]

74.4 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5111 5 > FP

Dapeng Zhang, 2016

5._PA_121_[PER] RUQ_1059

73.1 %
13 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

Population Assignment:

6._PA_121_[PER] GC-05-011-1-11

72.5 %
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

7._PA_121_[PER] GC-05-011-1-11

72.5 %
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

8._PA_121_[PER]

72.5 %
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5111 3

Dapeng Zhang, 2016

9._PA_121_[PER]

72.5 %
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5111 1 > FP

Dapeng Zhang, 2016

10._PA_121_[PER] RUQ_1059

72.5 %
40 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

11._PA_121_[PER]

72.5 %
40 shared markers

View View all Clone Any

Cocoa Research Institute of Ghana (CRIG), Ghana

Location: P60 102

Dapeng Zhang, 2016

12._PA_121_[PER]

72.5 %
40 shared markers

View View all Clone Any

Malaysian Cocoa Board (MCB), Malaysia

Location: C0233

Dapeng Zhang, 2016

13._PA_121_[PER]

72.4 %
38 shared markers

View View all Clone Any

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: Marper D393

Dapeng Zhang, 2016

14._PA_121_[PER] GC-05-011-1-11

66.7 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2 > FP4

15._PA_121_[PER]

66.7 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5111 2 > FP

Dapeng Zhang, 2016

16._PA_121_[PER] RUQ_1059

65.4 %
13 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Location: GBR207

Jocelyn De Wever et al., 2019

17._PA_121_[PER] RUQ_1059

32.9 %
35 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

Key to SNP Markers

Key to SNP Markers

1	TcSNP1520	2	TcSNP1484	3	TcSNP1458	4	TcSNP1442	5	TcSNP1414
6	TcSNP1350	7	TcSNP1270	8	TcSNP1253	9	TcSNP1165	10	TcSNP1144
11	TcSNP1075	12	TcSNP1062	13	TcSNP1060	14	TcSNP998	15	TcSNP994
16	TcSNP953	17	TcSNP929	18	TcSNP917	19	TcSNP891	20	TcSNP872
21	TcSNP723	22	TcSNP645	23	TcSNP619	24	TcSNP591	25	TcSNP577
26	TcSNP560	27	TcSNP534	28	TcSNP529	29	TcSNP469	30	TcSNP429
31	TcSNP372	32	TcSNP242	33	TcSNP230	34	TcSNP226	35	TcSNP193
36	TcSNP151	37	TcSNP150	38	TcSNP144	39	TcSNP32	40	TcSNP25