SNP Profiles of PA 121 [PER]   View Data

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 Key

 1234567891011121314
_Input profile
CTGGGGCTTTACTTTTCCCCAAGGCCAG
1._GC-05-011-1-11
CTGGGGCTTTACTTTTCCCCAAGGCCAG
2._GC-05-011-1-11
CTGGGGCTTTACTTTTCCCCAAGGCCAG
3._PA_121_[PER]
CTGGGGCTTTACTTTTCCCCAAGGCCAG
4._RUQ_1059
CTGGGGCTTTACTTTTCCCCAAGGCCAG
5._PA_121_[PER]
CTGGGGCTTTACTTTTCCCCAAGGCCAG
6._PA_121_[PER]
CTGGGGCTTTACTTTTCCCCAAGGCCAG
7._GC-05-011-1-11
CTGGGGCTTTACTTTTCCCCAAGGCCAG
8._PA_121_[PER]
CTGGGGCTTTACTTTTCCCCAAGGCCAG
9._PA_121_[PER]
CTGGGGCTTTACTTTTCC__AAGGCCAG
10._RUQ_1059
__GGGGCT______TT________CCAG
11._RUQ_1059
____GG________TT__CC__GG__AG
12._RUQ_1059
____CC__________________CC__
13._GC-05-011-1-11
CTAGCGCTCTAACTTTCCCTATAGCCAG
14._PA_121_[PER]
CTAGCGCTCTAACTTTCCCTATAGCCAG
15._GC-05-011-1-11
CCGGCGCTTT__CCGTTTCCTTAGCCAG
16._PA_121_[PER]
CCGGCGCTTT__CCGTTTCCTTAGCCAG
17._RUQ_1059
AGGGCCAGAAACAAAA____AAGGGGAG
 1516171819202122232425262728
_Input profile
TTAACGTTCCGGGGAATTCCCGGGCTAA
1._GC-05-011-1-11
TTAACGTTCCGGGGAATTCCCGGGCTAA
2._GC-05-011-1-11
TTAACGTTCCGGGGAATTCCCGGGCTAA
3._PA_121_[PER]
TTAACGTTCCGGGGAATTCCCGGGCTAA
4._RUQ_1059
TTAACGTTCCGGGGAATTCCCGGGCTAA
5._PA_121_[PER]
TTAACGTTCCGGGGAATTCCCGGGCTAA
6._PA_121_[PER]
TTAACGTTCCGGGGAATTCCCGGGCTAA
7._GC-05-011-1-11
TTAACGTTCCGGGGAATTCCCGGGCTAA
8._PA_121_[PER]
TTAACGTTCCGGGGAATTCCCGGGCTAA
9._PA_121_[PER]
TTAACGTTCCGGGGAATTCCCGGGCTAA
10._RUQ_1059
________CCGGGG__TTCCCGGGCTAA
11._RUQ_1059
__________GGGGAA__CCCG____AA
12._RUQ_1059
TT______CCCC______CCCG______
13._GC-05-011-1-11
TTAAGGCTCCGGGGAATTCCCCGTTTCC
14._PA_121_[PER]
TTAAGGCTCCGGGGAATTCCCCGTTTCC
15._GC-05-011-1-11
CTAAGGCTTTGGGTAACCCCGGGTCTCC
16._PA_121_[PER]
CTAAGGCTTTGGGTAACCCCGGGTCTCC
17._RUQ_1059
AAAACGAAGGCCCC__AACCCGCC__AA
 293031323334353637383940  
_Input profile
AGGGAACCAACCAACCGTACATGGX_XX_X
1._GC-05-011-1-11
AGGGAACCAACCAACCGTACATGGX_XX_X
2._GC-05-011-1-11
AGGGAACCAACCAACCGTACATGGX_XX_X
3._PA_121_[PER]
AGGGAACCAACCAACCGTACATGGX_XX_X
4._RUQ_1059
AGGGAACCAACCAACCGTACATGGX_XX_X
5._PA_121_[PER]
AGGGAACCAACCAACCGTACATGGX_XX_X
6._PA_121_[PER]
AGGGAACCAACCAACCGTACATGGX_XX_X
7._GC-05-011-1-11
AGGGAACCAACCAA__GTACATGGX_XX_X
8._PA_121_[PER]
AGGGAACCAACCAA__GTACATGGX_XX_X
9._PA_121_[PER]
AGGGAACCAA__AACCGTACATGGX_XX_X
10._RUQ_1059
AG__AACCAACCAACCGTAC____X_XX_X
11._RUQ_1059
________AA________AC____X_XX_X
12._RUQ_1059
____AA__AAGGAACC__AC____X_XX_X
13._GC-05-011-1-11
AGAGAACCAACCAATTTTCCTTCGX_XX_X
14._PA_121_[PER]
AGAGAACCAACCAATTTTCCTTCGX_XX_X
15._GC-05-011-1-11
AAAGTTCCAACCAACTGTCCAAGGX_XX_X
16._PA_121_[PER]
AAAGTTCCAACCAACTGTCCAAGGX_XX_X
17._RUQ_1059
__GGAAGGAAGGAAGGACACATGGX_XX_X

Input profile: PA_121_[PER]

 
Mars Center for Cocoa Science, Brazil
Location: 5111 3
 Dapeng Zhang, 2016

1._PA_121_[PER] GC-05-011-1-11

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

2._PA_121_[PER] GC-05-011-1-11

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

3._PA_121_[PER]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5111 1 > FP
 Dapeng Zhang, 2016

4._PA_121_[PER] RUQ_1059

identical
40 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

5._PA_121_[PER]

identical
40 shared markers

Cocoa Research Institute of Ghana (CRIG), Ghana
Location: P60 102
 Dapeng Zhang, 2016

6._PA_121_[PER]

identical
40 shared markers

Malaysian Cocoa Board (MCB), Malaysia
Location: C0233
 Dapeng Zhang, 2016

7._PA_121_[PER] GC-05-011-1-11

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP3
 Mars, 2018

8._PA_121_[PER]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5111 5 > FP
 Dapeng Zhang, 2016

9._PA_121_[PER]

identical
38 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D393
 Dapeng Zhang, 2016

10._PA_121_[PER] RUQ_1059

identical
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

11._PA_121_[PER] RUQ_1059

identical
13 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

12._PA_121_[PER] RUQ_1059

76.9 %
13 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Location: GBR207
 Jocelyn De Wever et al., 2019

13._PA_121_[PER] GC-05-011-1-11

72.5 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

14._PA_121_[PER]

72.5 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5111 4
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

15._PA_121_[PER] GC-05-011-1-11

62.8 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP4
 Mars, 2018

16._PA_121_[PER]

62.8 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5111 2 > FP
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

17._PA_121_[PER] RUQ_1059

48.6 %
35 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP998 15TcSNP994
16TcSNP953 17TcSNP929 18TcSNP917 19TcSNP891 20TcSNP872
21TcSNP723 22TcSNP645 23TcSNP619 24TcSNP591 25TcSNP577
26TcSNP560 27TcSNP534 28TcSNP529 29TcSNP469 30TcSNP429
31TcSNP372 32TcSNP242 33TcSNP230 34TcSNP226 35TcSNP193
36TcSNP151 37TcSNP150 38TcSNP144 39TcSNP32 40TcSNP25