SNP Profiles of OC 61/VEM   View Data

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 Key

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_Input profile
TTAAGGCTTTAACCTTCTTTAAAATTAG
1._GC-05-040-1-40
TTAAGGCTTTAACCTTCTTTAAAATTAG
2._GC-05-040-1-40
TTAAGGCTTTAACCTTCTTTAAAATTAG
3._GC-05-040-1-40
TTAAGGCTTTAACCTTCTTTAAAATTAG
4._GC-05-040-1-40
TTAAGGCTTTAACCTTCTTTAAAATTAG
5._GC-05-039-1-39
TTAAGGCTTTAACCTTCTTTAAAATTAG
6._GC-05-039-1-39
TTAAGGCTTTAACCTTCTTTAAAATTAG
7._GC-05-039-1-39
TTAAGGCTTTAACCTTCTTTAAAATTAG
8._OC_61_[VEN]
TTAAGGCTTTAACCTTCTTTAAAATTAG
9._OC_61_[VEN]
TTAAGGCTTTAACCTTCTTTAAAATTAG
10._OC_61_[VEN]
TTAAGGCTTTAACCTTCTTTAAAATTAG
11._OC_61_[VEN]
TTAAGGCTTTAACCTTCTTTAAAATTAG
12._OC_61_[VEN]
TTAAGGCTTTAACCTTCTTTAAAATTAG
13._OC_61_[VEN]
TTAAGGCTTTAACCTTCTTTAAAATTAG
14._GC-05-039-1-39
TTAAGGCTTTAACCTTCTTTAAAATTAG
15._GC-05-039-1-39
TTAAGGCTTTAACCTTCTTTAAAATTAG
16._OC_61_[VEN]
TTAAGGCTTTAACCTTCTTTAAAATTAG
17._OC_61_[VEN]
TTAAGGCTTTAACCTTCTTTAAAATTAG
18._OC_61_[VEN]
CTGGGGCTTTAACCGTCT__ATAATTAA
 1516171819202122232425262728
_Input profile
TTAAGGTTCCCGGGGGTTCCCCTTTTCC
1._GC-05-040-1-40
TTAAGGTTCCCGGGGGTTCCCCTTTTCC
2._GC-05-040-1-40
TTAAGGTTCCCGGGGGTTCCCCTTTTCC
3._GC-05-040-1-40
TTAAGGTTCCCGGGGGTTCCCCTTTTCC
4._GC-05-040-1-40
TTAAGGTTCCCGGGGGTTCCCCTTTTCC
5._GC-05-039-1-39
TTAAGGTTCCCGGGGGTTCCCCTTTTCC
6._GC-05-039-1-39
TTAAGGTTCCCGGGGGTTCCCCTTTTCC
7._GC-05-039-1-39
TTAAGGTTCCCGGGGGTTCCCCTTTTCC
8._OC_61_[VEN]
TTAAGGTTCCCGGGGGTTCCCCTTTTCC
9._OC_61_[VEN]
TTAAGGTTCCCGGGGGTTCCCCTTTTCC
10._OC_61_[VEN]
TTAAGGTTCCCGGGGGTTCCCCTTTTCC
11._OC_61_[VEN]
TTAAGGTTCCCGGGGGTTCCCCTTTTCC
12._OC_61_[VEN]
TTAAGGTTCCCGGGGGTTCCCCTTTTCC
13._OC_61_[VEN]
TTAAGGTTCCCGGGGGTTCCCCTTTTCC
14._GC-05-039-1-39
TTAAGGTTCCCGGGGGTTCCCCTTTTCC
15._GC-05-039-1-39
TTAAGGTTCCCGGGGGTTCCCCTTTTCC
16._OC_61_[VEN]
TTAAGGTTCCCGGGGGTTCCCCTTTTCC
17._OC_61_[VEN]
TTAAGGTTCCCGGGGGTTCCCCTTTTCC
18._OC_61_[VEN]
CTAAGGTTCCCGTTAGCTCCCGGTCCCC
 293031323334353637383940  
_Input profile
AAGGAACCAGCGAACCTTCCTTGGX_XX_X
1._GC-05-040-1-40
AAGGAACCAGCGAACCTTCCTTGGX_XX_X
2._GC-05-040-1-40
AAGGAACCAGCGAACCTTCCTTGGX_XX_X
3._GC-05-040-1-40
AAGGAACCAGCGAACCTTCCTTGGX_XX_X
4._GC-05-040-1-40
AAGGAACCAGCGAACCTTCCTTGGX_XX_X
5._GC-05-039-1-39
AAGGAACCAGCGAACCTTCCTTGGX_XX_X
6._GC-05-039-1-39
AAGGAACCAGCGAACCTTCCTTGGX_XX_X
7._GC-05-039-1-39
AAGGAACCAGCGAACCTTCCTTGGX_XX_X
8._OC_61_[VEN]
AAGGAACCAGCGAACCTTCCTTGGX_XX_X
9._OC_61_[VEN]
AAGGAACCAGCGAACCTTCCTTGGX_XX_X
10._OC_61_[VEN]
AAGGAACCAGCGAACCTTCCTTGGX_XX_X
11._OC_61_[VEN]
AAGGAACCAGCGAACCTTCCTTGGX_XX_X
12._OC_61_[VEN]
AAGGAACCAGCGAACCTTCCTTGGX_XX_X
13._OC_61_[VEN]
AAGGAACCAGCGAACCTTCCTTGGX_XX_X
14._GC-05-039-1-39
AAGGAACCAGCGAACCTTACTTGGX_XX_X
15._GC-05-039-1-39
AAGGAACCAGCGAACCTTACTTGGX_XX_X
16._OC_61_[VEN]
AAGGAACCAGCGAACCTTACTTGGX_XX_X
17._OC_61_[VEN]
AAGGAACCAGCGAACCTTACTTGGX_XX_X
18._OC_61_[VEN]
AGGGATCTGG__ACTTGTACATGGX_XX_X

Input profile: OC_61_[VEN]

 
Mars Center for Cocoa Science, Brazil
Location: 5140 1 > FP
 Dapeng Zhang, 2016

1._OC_61_[VEN] GC-05-040-1-40

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP4
 Mars, 2018

2._OC_61_[VEN] GC-05-040-1-40

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP3
 Mars, 2018

3._OC_61_[VEN] GC-05-040-1-40

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP2
 Mars, 2018

4._OC_61_[VEN] GC-05-040-1-40

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

5._OC_61_[VEN] GC-05-039-1-39

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP3
 Mars, 2018

6._OC_61_[VEN] GC-05-039-1-39

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP2
 Mars, 2018

7._OC_61_[VEN] GC-05-039-1-39

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP4
 Mars, 2018

8._OC_61_[VEN]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5140 5 > FP
 Dapeng Zhang, 2016

9._OC_61_[VEN]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5139 3 > FP
 Dapeng Zhang, 2016

10._OC_61_[VEN]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5139 4 > FP
 Dapeng Zhang, 2016

11._OC_61_[VEN]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5139 5 > FP
 Dapeng Zhang, 2016

12._OC_61_[VEN]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5140 3 > FP
 Dapeng Zhang, 2016

13._OC_61_[VEN]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5140 4 > FP
 Dapeng Zhang, 2016

14._OC_61_[VEN] GC-05-039-1-39

98.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

15._OC_61_[VEN] GC-05-039-1-39

98.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

16._OC_61_[VEN]

98.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5139 2
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

17._OC_61_[VEN]

98.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5139 1 > FP
 Dapeng Zhang, 2016

18._OC_61_[VEN]

67.1 %
38 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 4A C317 T1
 Dapeng Zhang, 2016

 


  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP998 15TcSNP994
16TcSNP953 17TcSNP929 18TcSNP917 19TcSNP891 20TcSNP872
21TcSNP723 22TcSNP645 23TcSNP619 24TcSNP591 25TcSNP577
26TcSNP560 27TcSNP534 28TcSNP529 29TcSNP469 30TcSNP429
31TcSNP372 32TcSNP242 33TcSNP230 34TcSNP226 35TcSNP193
36TcSNP151 37TcSNP150 38TcSNP144 39TcSNP32 40TcSNP25