SNP Profiles of NA 33   View Data

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 Key

 1234567891011121314
_Input profile
CCAGCCTTTTAATTCCCCAAAGCCAGCT
1._NA_33
CCAGCCTTTTAATTCCCCAAAGCCAGCT
2._GC-01-6-1-06
CCAGCCTTTTAATTCCCCAAAGCCAGCT
3._GC-01-6-1-06
CCAGCCTTTTAATTCCCCAAAGCCAGCT
4._GC-01-6-1-06
CCAGCCTTTTAATTCCCCAAAGCCAGCT
5._GC-01-6-1-06
CCAGCCTTTTAATTCCCCAAAGCCAGCT
6._GC-01-006-1-06
CCAGCCTTTTAATTCCCCAAAGCCAGCT
7._GC-01-006-1-06
CCAGCCTTTTAATTCCCCAAAGCCAGCT
8._GC-01-006-1-06
CCAGCCTTTTAATTCCCCAAAGCCAGCT
9._GC-01-006-1-06
CCAGCCTTTTAATTCCCCAAAGCCAGCT
10._NA_33
CCAGCCTTTTAATTCCCCAAAGCCAGCT
11._NA_33
CCAGCCTTTTAATTCCCCAAAGCCAGCT
12._NA_33
CCAGCCTTTTAATTCCCCAAAGCCAGCT
13._NA_33
CCAGCCTTTTAATTCCCCAAAGCCAGCT
14._NA_33
CCAGCCTTTTAATTCCCCAAAGCCAGCT
15._NA_33
CCAGCCTTTTAATTCCCCAAAGCCAGCT
16._NA_33
CCAGCCTTTTAATTCCCCAAAGCCAGCT
17._NA_33
CCAGCCTTTTAATTCCCCAAAGCCAGCT
18._NA_33
CCAGCCTTTTAATTCCCCAAAGCCAGCT
19._NA_33
CCAGCCTTTTAATTCCCCAAAGCCAGCT
20._GC-01-006-1-06
CCAGCCTTTTAATTCCCCAAAGCCAGCT
21._GC-01-006-1-06
CCAGCCTTTTAATTCCCCAAAGCCAGCT
22._GC-01-006-1-06
CCAGCCTTTTAATTCCCCAAAGCCAGCT
23._GC-01-006-1-06
CCAGCCTTTTAATTCCCCAAAGCCAGCT
24._NA_33
CCAGCCTTTTACTTCCCCAAAGCCAGCT
25._NA_33
CCAGCCTTTTACTTCCCCAAAGCCAGCT
26._RUQ_1577
CCAGCCTTTTACTTCCCCAAGGCCAGTT
27._NA_33
CCAGCGTTTTCCTTCCCCAAAGCTAGCT
28._NA_33
CCAACCTTTTACTTCCCCAAGGCCAGTT
29._RUQ_1577
__AACCTT______________CCAG__
30._NA33
____GG________________CC__CT
31._RUQ_1577
____CC__________CC__GG__AG__
32._GC-01-6-1-6
GGAGGGAAAAACAA____AAAGGGAGAG
33._MITC-000715
GGAGGGAAAAACAA____AAAGGGAGAG
34._NA_33
GGAGGGAAAA__AA____AAAGGGAGAG
35._RUQ_1577
GGAAGGAAAAACAA____AAGGGGAGAA
 1516171819202122232425262728
_Input profile
AACGCCCTGGGGAACTACGGGGCTCCAG
1._NA_33
AACGCCCTGGGGAACTACGGGGCTCCAG
2._GC-01-6-1-06
AACGCCCTGGGGAACTACGGGGCTCCAG
3._GC-01-6-1-06
AACGCCCTGGGGAACTACGGGGCTCCAG
4._GC-01-6-1-06
AACGCCCTGGGGAACTACGGGGCTCCAG
5._GC-01-6-1-06
AACGCCCTGGGGAACTACGGGGCTCCAG
6._GC-01-006-1-06
AACGCCCTGGGGAACTACGGGGCTCCAG
7._GC-01-006-1-06
AACGCCCTGGGGAACTACGGGGCTCCAG
8._GC-01-006-1-06
AACGCCCTGGGGAACTACGGGGCTCCAG
9._GC-01-006-1-06
AACGCCCTGGGGAACTACGGGGCTCCAG
10._NA_33
AACGCCCTGGGGAACTACGGGGCTCCAG
11._NA_33
AACGCCCTGGGGAACTACGGGGCTCCAG
12._NA_33
AACGCCCTGGGGAACTACGGGGCTCCAG
13._NA_33
AACGCCCTGGGGAACTACGGGGCTCCAG
14._NA_33
AACGCCCTGGGGAACTACGGGGCTCCAG
15._NA_33
AACGCCCTGGGGAACTACGGGGCTCCAG
16._NA_33
AACGCCCTGGGGAACTACGGGGCTCCAG
17._NA_33
AACGCCCTGGGGAACTACGGGGCTCCAG
18._NA_33
AACGCCCTGGGGAACTACGGGGCTCCAG
19._NA_33
AACGCCCTGGGGAACTACGGGGCTCCAG
20._GC-01-006-1-06
AACGCCCTGGGGAACTACGGGGCTCCAG
21._GC-01-006-1-06
AACGCCCTGGGGAACTACGGGGCTCCAG
22._GC-01-006-1-06
AACGCCCTGGGGAACTACGGGGCTCCAG
23._GC-01-006-1-06
AACGCCCTGGGGAACTACGGGGCTCCAG
24._NA_33
AACGCCCTGGGGAGCTACGGGGCTCCAG
25._NA_33
AACGCCCTGGGGAGCTACGGGGCTCCAG
26._RUQ_1577
AAGGCCCCCGGGAGCTAAGGGGCTCCAA
27._NA_33
AAGGCCCCCCGGAACTAAGGGGCTCCAA
28._NA_33
AAGGCCCCCGGGAGCTAAGGGGCTCCAA
29._RUQ_1577
______CCCGGG__CTAAGGGGCTCCAA
30._NA33
______CTCC______ACGG________
31._RUQ_1577
________CGGGAG__AAGG____CC__
32._GC-01-6-1-6
AACGGGAGCCCC__AGACGGCC__CC__
33._MITC-000715
AACGGGAGCCCC__AGACGGCC__CC__
34._NA_33
AACGGGAGCCCC__AGACGGCC__CC__
35._RUQ_1577
AAGGGGGGCGCC__AGAAGGCC__CC__
 2930313233343536373839   
_Input profile
GGATCTGGCCACCTGGACTTGGX_XX_XX_X
1._NA_33
GGATCTGGCCACCTGGACTTGGX_XX_XX_X
2._GC-01-6-1-06
GGATCTGGCCACCTGGACTTGGX_XX_XX_X
3._GC-01-6-1-06
GGATCTGGCCACCTGGACTTGGX_XX_XX_X
4._GC-01-6-1-06
GGATCTGGCCACCTGGACTTGGX_XX_XX_X
5._GC-01-6-1-06
GGATCTGGCCACCTGGACTTGGX_XX_XX_X
6._GC-01-006-1-06
GGATCTGGCCACCTGGACTTGGX_XX_XX_X
7._GC-01-006-1-06
GGATCTGGCCACCTGGACTTGGX_XX_XX_X
8._GC-01-006-1-06
GGATCTGGCCACCTGGACTTGGX_XX_XX_X
9._GC-01-006-1-06
GGATCTGGCCACCTGGACTTGGX_XX_XX_X
10._NA_33
GGATCTGGCCACCTGGACTTGGX_XX_XX_X
11._NA_33
GGATCTGGCCACCTGGACTTGGX_XX_XX_X
12._NA_33
GGATCTGGCCACCTGGACTTGGX_XX_XX_X
13._NA_33
GGATCTGGCCACCTGGACTTGGX_XX_XX_X
14._NA_33
GGATCTGGCCACCTGGACTTGGX_XX_XX_X
15._NA_33
GGATCTGGCCACCTGGACTTGGX_XX_XX_X
16._NA_33
GGATCTGGCCACCTGGACTTGGX_XX_XX_X
17._NA_33
GGATCTGGCCACCTGGACTTGGX_XX_XX_X
18._NA_33
GGATCTGGCCACCTGGACTTGGX_XX_XX_X
19._NA_33
GGATCTGGCCACCTGGACTTGGX_XX_XX_X
20._GC-01-006-1-06
GGATCTGGCCACCTGGACTTGGX_XX_XX_X
21._GC-01-006-1-06
GGATCTGGCCACCTGGACTTGGX_XX_XX_X
22._GC-01-006-1-06
GGATCTGGCCACCTGGACTTGGX_XX_XX_X
23._GC-01-006-1-06
GGATCTGGCCACCTGGACTTGGX_XX_XX_X
24._NA_33
GGATCTGGCCACCTGGACTTGGX_XX_XX_X
25._NA_33
GGATCTGGCCACCTGGACTTGGX_XX_XX_X
26._RUQ_1577
GGAACTAGCGACCCGGCCTTGGX_XX_XX_X
27._NA_33
GGATTTAGCGAACTGGACATGGX_XX_XX_X
28._NA_33
GGAACTAGGGACCCGGCCTTGGX_XX_XX_X
29._RUQ_1577
__AACTAGCGACCCGGCC____X_XX_XX_X
30._NA33
__AT__GGGGACCT__AC____X_XX_XX_X
31._RUQ_1577
______AG________CC____X_XX_XX_X
32._GC-01-6-1-6
GGATAGGGGGACAGCCACTTGGX_XX_XX_X
33._MITC-000715
GGATAGGGGGACAGCCACTTGGX_XX_XX_X
34._NA_33
GGATAGGGGGACAGCCACTTGGX_XX_XX_X
35._RUQ_1577
GGAAAGAGCGACGGCCCCTTGGX_XX_XX_X

Input profile: NA_33

 
Mars Center for Cocoa Science, Brazil
Location: 1104 9 > FP
 Dapeng Zhang, 2016

1._NA_33

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1104 12 > F
 Dapeng Zhang, 2016

2._NA_33 GC-01-6-1-06

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 1, Rep: 4, Tree: PL9
Notes: PL9 FP1
 Mars, 2018

3._NA_33 GC-01-6-1-06

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 1, Rep: 4, Tree: PL3
Notes: PL3 FP2
 Mars, 2018

4._NA_33 GC-01-6-1-06

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 1, Rep: 4, Tree: PL12
Notes: PL12 FP4
 Mars, 2018

5._NA_33 GC-01-6-1-06

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 1, Rep: 4, Tree: PL14
Notes: PL14 FP3
 Mars, 2018

6._NA_33 GC-01-006-1-06

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP5
 Mars, 2018

7._NA_33 GC-01-006-1-06

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP6
 Mars, 2018

8._NA_33 GC-01-006-1-06

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6 > FP11
 Mars, 2018

9._NA_33 GC-01-006-1-06

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7 > FP12
 Mars, 2018

10._NA_33

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1104 1 > FP
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

11._NA_33

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1104 10 > F
 Dapeng Zhang, 2016

12._NA_33

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1104 11 > F
 Dapeng Zhang, 2016

13._NA_33

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1104 14 > F
 Dapeng Zhang, 2016

14._NA_33

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1104 15 > F
 Dapeng Zhang, 2016

15._NA_33

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1104 16 > F
 Dapeng Zhang, 2016

16._NA_33

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1104 2 > FP
 Dapeng Zhang, 2016

17._NA_33

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1104 3 > FP
 Dapeng Zhang, 2016

18._NA_33

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1104 6 > FP
 Dapeng Zhang, 2016

19._NA_33

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1104 7 > FP
 Dapeng Zhang, 2016

20._NA_33 GC-01-006-1-06

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10 > FP8
 Mars, 2018

21._NA_33 GC-01-006-1-06

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11 > FP9
 Mars, 2018

22._NA_33 GC-01-006-1-06

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15 > FP13
 Mars, 2018

23._NA_33 GC-01-006-1-06

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16 > FP14
 Mars, 2018

24._NA_33

97.4 %
39 shared markers

Indonesian Coffee and Cocoa Research Institute (ICCRI), Indonesia
Location: KW 397 I-032
 Dapeng Zhang, 2016

25._NA_33

97.4 %
39 shared markers

Malaysian Cocoa Board (MCB), Malaysia
Location: Row 24 C0211 44
 Dapeng Zhang, 2016

26._NA_33 RUQ_1577

82.1 %
39 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

27._NA_33

80.8 %
39 shared markers

Cocoa Research Institute of Ghana (CRIG), Ghana
Location: M6 18, 19
 Dapeng Zhang, 2016

28._NA_33

79.5 %
39 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 4A D371 T2
 Dapeng Zhang, 2016

29._NA_33 RUQ_1577

78.3 %
23 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

30._NA_33 NA33

76.9 %
13 shared markers

Center for Forestry Research and Technology Transfer, Vietnam
Location: CEFORTT
 Jocelyn De Wever et al., 2019

31._NA_33 RUQ_1577

75 %
12 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

32._NA_33 GC-01-6-1-6

48.5 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 1, Rep: 4, Tree: 1 > FP5
Notes: Brazil_Selections_Poss_grandparent
 Mars, 2018

33._NA_33 MITC-000715

48.5 %
34 shared markers

USDA-SHRS, United States of America
 Mars, 2018

34._NA_33

48.5 %
33 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: FP 4
 Mars, 2018

35._NA_33 RUQ_1577

41.2 %
34 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1165 9TcSNP1144 10TcSNP1075
11TcSNP1062 12TcSNP1060 13TcSNP998 14TcSNP994 15TcSNP953
16TcSNP929 17TcSNP917 18TcSNP891 19TcSNP872 20TcSNP723
21TcSNP645 22TcSNP619 23TcSNP591 24TcSNP577 25TcSNP560
26TcSNP534 27TcSNP529 28TcSNP469 29TcSNP429 30TcSNP372
31TcSNP242 32TcSNP230 33TcSNP226 34TcSNP193 35TcSNP151
36TcSNP150 37TcSNP144 38TcSNP32 39TcSNP25