SNP Profiles of NA 33   View Data

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 Key

 1234567891011121314
_Input profile
CCAGCGTTTTCCTTTTCCCCAAAGCTAG
1._RUQ_1577
CCAGCCTTTTACTTGTCCCCAAGGCCAG
2._GC-01-6-1-06
CCAGCCTTTTAATT__CCCCAAAGCCAG
3._NA_33
CCAGCCTTTTAATT__CCCCAAAGCCAG
4._NA_33
CCAGCCTTTTAATTGTCCCCAAAGCCAG
5._GC-01-6-1-06
CCAGCCTTTTAATTGTCCCCAAAGCCAG
6._GC-01-6-1-06
CCAGCCTTTTAATTGTCCCCAAAGCCAG
7._GC-01-6-1-06
CCAGCCTTTTAATTGTCCCCAAAGCCAG
8._GC-01-006-1-06
CCAGCCTTTTAATTGTCCCCAAAGCCAG
9._GC-01-006-1-06
CCAGCCTTTTAATTGTCCCCAAAGCCAG
10._GC-01-006-1-06
CCAGCCTTTTAATTGTCCCCAAAGCCAG
11._GC-01-006-1-06
CCAGCCTTTTAATTGTCCCCAAAGCCAG
12._NA_33
CCAGCCTTTTAATTGTCCCCAAAGCCAG
13._NA_33
CCAGCCTTTTAATTGTCCCCAAAGCCAG
14._NA_33
CCAGCCTTTTAATTGTCCCCAAAGCCAG
15._NA_33
CCAGCCTTTTAATTGTCCCCAAAGCCAG
16._NA_33
CCAGCCTTTTAATTGTCCCCAAAGCCAG
17._NA_33
CCAGCCTTTTAATTGTCCCCAAAGCCAG
18._NA_33
CCAGCCTTTTAATTGTCCCCAAAGCCAG
19._NA_33
CCAGCCTTTTAATTGTCCCCAAAGCCAG
20._NA_33
CCAGCCTTTTAATTGTCCCCAAAGCCAG
21._NA_33
CCAGCCTTTTAATTGTCCCCAAAGCCAG
22._GC-01-006-1-06
CCAGCCTTTTAATTGTCCCCAAAGCCAG
23._GC-01-006-1-06
CCAGCCTTTTAATTGTCCCCAAAGCCAG
24._GC-01-006-1-06
CCAGCCTTTTAATTGTCCCCAAAGCCAG
25._GC-01-006-1-06
CCAGCCTTTTAATTGTCCCCAAAGCCAG
26._NA_33
CCAGCCTTTTACTTGTCCCCAAAGCCAG
27._NA_33
CCAGCCTTTTACTTGTCCCCAAAGCCAG
28._NA_33
CCAACCTTTTACTTGTCCCCAAGGCCAG
29._RUQ_1577
__AACCTT______GT________CCAG
30._RUQ_1577
____CC________GT__CC__GG__AG
31._NA33
____GG__________________CC__
32._GC-01-6-1-6
GGAGGGAAAAACAAAC____AAAGGGAG
33._MITC-000715
GGAGGGAAAAACAAAC____AAAGGGAG
34._NA_33
GGAGGGAAAA__AAAC____AAAGGGAG
35._RUQ_1577
GGAAGGAAAAACAAAC____AAGGGGAG
 1516171819202122232425262728
_Input profile
CTAAGGCCCCCCGGAACTAAGGGGCTCC
1._RUQ_1577
TTAAGGCCCCCGGGAGCTAAGGGGCTCC
2._GC-01-6-1-06
CTAACGCCCTGGGGAACTACGGGGCTCC
3._NA_33
CTAACGCCCTGGGGAACTACGGGGCTCC
4._NA_33
CTAACGCCCTGGGGAACTACGGGGCTCC
5._GC-01-6-1-06
CTAACGCCCTGGGGAACTACGGGGCTCC
6._GC-01-6-1-06
CTAACGCCCTGGGGAACTACGGGGCTCC
7._GC-01-6-1-06
CTAACGCCCTGGGGAACTACGGGGCTCC
8._GC-01-006-1-06
CTAACGCCCTGGGGAACTACGGGGCTCC
9._GC-01-006-1-06
CTAACGCCCTGGGGAACTACGGGGCTCC
10._GC-01-006-1-06
CTAACGCCCTGGGGAACTACGGGGCTCC
11._GC-01-006-1-06
CTAACGCCCTGGGGAACTACGGGGCTCC
12._NA_33
CTAACGCCCTGGGGAACTACGGGGCTCC
13._NA_33
CTAACGCCCTGGGGAACTACGGGGCTCC
14._NA_33
CTAACGCCCTGGGGAACTACGGGGCTCC
15._NA_33
CTAACGCCCTGGGGAACTACGGGGCTCC
16._NA_33
CTAACGCCCTGGGGAACTACGGGGCTCC
17._NA_33
CTAACGCCCTGGGGAACTACGGGGCTCC
18._NA_33
CTAACGCCCTGGGGAACTACGGGGCTCC
19._NA_33
CTAACGCCCTGGGGAACTACGGGGCTCC
20._NA_33
CTAACGCCCTGGGGAACTACGGGGCTCC
21._NA_33
CTAACGCCCTGGGGAACTACGGGGCTCC
22._GC-01-006-1-06
CTAACGCCCTGGGGAACTACGGGGCTCC
23._GC-01-006-1-06
CTAACGCCCTGGGGAACTACGGGGCTCC
24._GC-01-006-1-06
CTAACGCCCTGGGGAACTACGGGGCTCC
25._GC-01-006-1-06
CTAACGCCCTGGGGAACTACGGGGCTCC
26._NA_33
CTAACGCCCTGGGGAGCTACGGGGCTCC
27._NA_33
CTAACGCCCTGGGGAGCTACGGGGCTCC
28._NA_33
TTAAGGCCCCCGGGAGCTAAGGGGCTCC
29._RUQ_1577
________CCCGGG__CTAAGGGGCTCC
30._RUQ_1577
__________CGGGAG__AAGG____CC
31._NA33
CT______CTCC______ACGG______
32._GC-01-6-1-6
AGAACGGGAGCCCC__AGACGGCC__CC
33._MITC-000715
AGAACGGGAGCCCC__AGACGGCC__CC
34._NA_33
AGAACGGGAGCCCC__AGACGGCC__CC
35._RUQ_1577
AAAAGGGGGGCGCC__AGAAGGCC__CC
 293031323334353637383940  
_Input profile
AAGGATTTAGCGAACTGGACATGGX_XX_X
1._RUQ_1577
AAGGAACTAGCGACCCGGCCTTGGX_XX_X
2._GC-01-6-1-06
AGGGATCTGGCCACCTGGACTTGGX_XX_X
3._NA_33
AGGGATCTGGCCACCTGGACTTGGX_XX_X
4._NA_33
AGGGATCTGGCCACCTGGACTTGGX_XX_X
5._GC-01-6-1-06
AGGGATCTGGCCACCTGGACTTGGX_XX_X
6._GC-01-6-1-06
AGGGATCTGGCCACCTGGACTTGGX_XX_X
7._GC-01-6-1-06
AGGGATCTGGCCACCTGGACTTGGX_XX_X
8._GC-01-006-1-06
AGGGATCTGGCCACCTGGACTTGGX_XX_X
9._GC-01-006-1-06
AGGGATCTGGCCACCTGGACTTGGX_XX_X
10._GC-01-006-1-06
AGGGATCTGGCCACCTGGACTTGGX_XX_X
11._GC-01-006-1-06
AGGGATCTGGCCACCTGGACTTGGX_XX_X
12._NA_33
AGGGATCTGGCCACCTGGACTTGGX_XX_X
13._NA_33
AGGGATCTGGCCACCTGGACTTGGX_XX_X
14._NA_33
AGGGATCTGGCCACCTGGACTTGGX_XX_X
15._NA_33
AGGGATCTGGCCACCTGGACTTGGX_XX_X
16._NA_33
AGGGATCTGGCCACCTGGACTTGGX_XX_X
17._NA_33
AGGGATCTGGCCACCTGGACTTGGX_XX_X
18._NA_33
AGGGATCTGGCCACCTGGACTTGGX_XX_X
19._NA_33
AGGGATCTGGCCACCTGGACTTGGX_XX_X
20._NA_33
AGGGATCTGGCCACCTGGACTTGGX_XX_X
21._NA_33
AGGGATCTGGCCACCTGGACTTGGX_XX_X
22._GC-01-006-1-06
AGGGATCTGGCCACCTGGACTTGGX_XX_X
23._GC-01-006-1-06
AGGGATCTGGCCACCTGGACTTGGX_XX_X
24._GC-01-006-1-06
AGGGATCTGGCCACCTGGACTTGGX_XX_X
25._GC-01-006-1-06
AGGGATCTGGCCACCTGGACTTGGX_XX_X
26._NA_33
AGGGATCTGGCCACCTGGACTTGGX_XX_X
27._NA_33
AGGGATCTGGCCACCTGGACTTGGX_XX_X
28._NA_33
AAGGAACTAGGGACCCGGCCTTGGX_XX_X
29._RUQ_1577
AA__AACTAGCGACCCGGCC____X_XX_X
30._RUQ_1577
________AG________CC____X_XX_X
31._NA33
____AT__GGGGACCT__AC____X_XX_X
32._GC-01-6-1-6
__GGATAGGGGGACAGCCACTTGGX_XX_X
33._MITC-000715
__GGATAGGGGGACAGCCACTTGGX_XX_X
34._NA_33
__GGATAGGGGGACAGCCACTTGGX_XX_X
35._RUQ_1577
__GGAAAGAGCGACGGCCCCTTGGX_XX_X

Input profile: NA_33

 
Cocoa Research Institute of Ghana (CRIG), Ghana
Location: M6 18, 19
 Dapeng Zhang, 2016

1._NA_33 RUQ_1577

82.5 %
40 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

2._NA_33 GC-01-6-1-06

80.8 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 1, Rep: 4, Tree: PL9
Notes: PL9 FP1
 Mars, 2018

3._NA_33

80.8 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1104 9 > FP
 Dapeng Zhang, 2016

4._NA_33

80 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1104 14 > F
 Dapeng Zhang, 2016

5._NA_33 GC-01-6-1-06

80 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 1, Rep: 4, Tree: PL12
Notes: PL12 FP4
 Mars, 2018

6._NA_33 GC-01-6-1-06

80 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 1, Rep: 4, Tree: PL3
Notes: PL3 FP2
 Mars, 2018

7._NA_33 GC-01-6-1-06

80 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 1, Rep: 4, Tree: PL14
Notes: PL14 FP3
 Mars, 2018

8._NA_33 GC-01-006-1-06

80 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP5
 Mars, 2018

9._NA_33 GC-01-006-1-06

80 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP6
 Mars, 2018

10._NA_33 GC-01-006-1-06

80 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6 > FP11
 Mars, 2018

11._NA_33 GC-01-006-1-06

80 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7 > FP12
 Mars, 2018

12._NA_33

80 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1104 1 > FP
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

13._NA_33

80 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1104 10 > F
 Dapeng Zhang, 2016

14._NA_33

80 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1104 11 > F
 Dapeng Zhang, 2016

15._NA_33

80 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1104 12 > F
 Dapeng Zhang, 2016

16._NA_33

80 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1104 15 > F
 Dapeng Zhang, 2016

17._NA_33

80 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1104 16 > F
 Dapeng Zhang, 2016

18._NA_33

80 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1104 2 > FP
 Dapeng Zhang, 2016

19._NA_33

80 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1104 3 > FP
 Dapeng Zhang, 2016

20._NA_33

80 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1104 6 > FP
 Dapeng Zhang, 2016

21._NA_33

80 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1104 7 > FP
 Dapeng Zhang, 2016

22._NA_33 GC-01-006-1-06

80 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10 > FP8
 Mars, 2018

23._NA_33 GC-01-006-1-06

80 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11 > FP9
 Mars, 2018

24._NA_33 GC-01-006-1-06

80 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15 > FP13
 Mars, 2018

25._NA_33 GC-01-006-1-06

80 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16 > FP14
 Mars, 2018

26._NA_33

80 %
40 shared markers

Indonesian Coffee and Cocoa Research Institute (ICCRI), Indonesia
Location: KW 397 I-032
 Dapeng Zhang, 2016

27._NA_33

80 %
40 shared markers

Malaysian Cocoa Board (MCB), Malaysia
Location: Row 24 C0211 44
 Dapeng Zhang, 2016

28._NA_33

80 %
40 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 4A D371 T2
 Dapeng Zhang, 2016

29._NA_33 RUQ_1577

79.2 %
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

30._NA_33 RUQ_1577

76.9 %
13 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

31._NA_33 NA33

73.1 %
13 shared markers

Center for Forestry Research and Technology Transfer, Vietnam
Location: CEFORTT
 Jocelyn De Wever et al., 2019

32._NA_33 GC-01-6-1-6

45.7 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 1, Rep: 4, Tree: 1 > FP5
Notes: Brazil_Selections_Poss_grandparent
 Mars, 2018

33._NA_33 MITC-000715

45.7 %
35 shared markers

USDA-SHRS, United States of America
 Mars, 2018

34._NA_33

45.6 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: FP 4
 Mars, 2018

35._NA_33 RUQ_1577

44.3 %
35 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP998 15TcSNP994
16TcSNP953 17TcSNP929 18TcSNP917 19TcSNP891 20TcSNP872
21TcSNP723 22TcSNP645 23TcSNP619 24TcSNP591 25TcSNP577
26TcSNP560 27TcSNP534 28TcSNP529 29TcSNP469 30TcSNP429
31TcSNP372 32TcSNP242 33TcSNP230 34TcSNP226 35TcSNP193
36TcSNP151 37TcSNP150 38TcSNP144 39TcSNP32 40TcSNP25