SNP Profiles of NA 33   View Data

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 Key

 1234567891011121314
_Input profile
CCAGCCTTTTACTTGTCCCCAAGGCCAG
1._RUQ_1577
____CC________GT__CC__GG__AG
2._RUQ_1577
__AACCTT______GT________CCAG
3._NA_33
CCAACCTTTTACTTGTCCCCAAGGCCAG
4._NA_33
CCAGCCTTTTACTTGTCCCCAAAGCCAG
5._NA_33
CCAGCCTTTTACTTGTCCCCAAAGCCAG
6._NA_33
CCAGCCTTTTAATTGTCCCCAAAGCCAG
7._GC-01-6-1-06
CCAGCCTTTTAATTGTCCCCAAAGCCAG
8._GC-01-6-1-06
CCAGCCTTTTAATTGTCCCCAAAGCCAG
9._GC-01-6-1-06
CCAGCCTTTTAATTGTCCCCAAAGCCAG
10._GC-01-006-1-06
CCAGCCTTTTAATTGTCCCCAAAGCCAG
11._GC-01-006-1-06
CCAGCCTTTTAATTGTCCCCAAAGCCAG
12._GC-01-006-1-06
CCAGCCTTTTAATTGTCCCCAAAGCCAG
13._GC-01-006-1-06
CCAGCCTTTTAATTGTCCCCAAAGCCAG
14._NA_33
CCAGCCTTTTAATTGTCCCCAAAGCCAG
15._NA_33
CCAGCCTTTTAATTGTCCCCAAAGCCAG
16._NA_33
CCAGCCTTTTAATTGTCCCCAAAGCCAG
17._NA_33
CCAGCCTTTTAATTGTCCCCAAAGCCAG
18._NA_33
CCAGCCTTTTAATTGTCCCCAAAGCCAG
19._NA_33
CCAGCCTTTTAATTGTCCCCAAAGCCAG
20._NA_33
CCAGCCTTTTAATTGTCCCCAAAGCCAG
21._NA_33
CCAGCCTTTTAATTGTCCCCAAAGCCAG
22._NA_33
CCAGCCTTTTAATTGTCCCCAAAGCCAG
23._NA_33
CCAGCCTTTTAATTGTCCCCAAAGCCAG
24._GC-01-006-1-06
CCAGCCTTTTAATTGTCCCCAAAGCCAG
25._GC-01-006-1-06
CCAGCCTTTTAATTGTCCCCAAAGCCAG
26._GC-01-006-1-06
CCAGCCTTTTAATTGTCCCCAAAGCCAG
27._GC-01-006-1-06
CCAGCCTTTTAATTGTCCCCAAAGCCAG
28._NA_33
CCAGCGTTTTCCTTTTCCCCAAAGCTAG
29._GC-01-6-1-06
CCAGCCTTTTAATT__CCCCAAAGCCAG
30._NA_33
CCAGCCTTTTAATT__CCCCAAAGCCAG
31._NA33
____GG__________________CC__
32._RUQ_1577
GGAAGGAAAAACAAAC____AAGGGGAG
33._GC-01-6-1-6
GGAGGGAAAAACAAAC____AAAGGGAG
34._MITC-000715
GGAGGGAAAAACAAAC____AAAGGGAG
35._NA_33
GGAGGGAAAA__AAAC____AAAGGGAG
 1516171819202122232425262728
_Input profile
TTAAGGCCCCCGGGAGCTAAGGGGCTCC
1._RUQ_1577
__________CGGGAG__AAGG____CC
2._RUQ_1577
________CCCGGG__CTAAGGGGCTCC
3._NA_33
TTAAGGCCCCCGGGAGCTAAGGGGCTCC
4._NA_33
CTAACGCCCTGGGGAGCTACGGGGCTCC
5._NA_33
CTAACGCCCTGGGGAGCTACGGGGCTCC
6._NA_33
CTAACGCCCTGGGGAACTACGGGGCTCC
7._GC-01-6-1-06
CTAACGCCCTGGGGAACTACGGGGCTCC
8._GC-01-6-1-06
CTAACGCCCTGGGGAACTACGGGGCTCC
9._GC-01-6-1-06
CTAACGCCCTGGGGAACTACGGGGCTCC
10._GC-01-006-1-06
CTAACGCCCTGGGGAACTACGGGGCTCC
11._GC-01-006-1-06
CTAACGCCCTGGGGAACTACGGGGCTCC
12._GC-01-006-1-06
CTAACGCCCTGGGGAACTACGGGGCTCC
13._GC-01-006-1-06
CTAACGCCCTGGGGAACTACGGGGCTCC
14._NA_33
CTAACGCCCTGGGGAACTACGGGGCTCC
15._NA_33
CTAACGCCCTGGGGAACTACGGGGCTCC
16._NA_33
CTAACGCCCTGGGGAACTACGGGGCTCC
17._NA_33
CTAACGCCCTGGGGAACTACGGGGCTCC
18._NA_33
CTAACGCCCTGGGGAACTACGGGGCTCC
19._NA_33
CTAACGCCCTGGGGAACTACGGGGCTCC
20._NA_33
CTAACGCCCTGGGGAACTACGGGGCTCC
21._NA_33
CTAACGCCCTGGGGAACTACGGGGCTCC
22._NA_33
CTAACGCCCTGGGGAACTACGGGGCTCC
23._NA_33
CTAACGCCCTGGGGAACTACGGGGCTCC
24._GC-01-006-1-06
CTAACGCCCTGGGGAACTACGGGGCTCC
25._GC-01-006-1-06
CTAACGCCCTGGGGAACTACGGGGCTCC
26._GC-01-006-1-06
CTAACGCCCTGGGGAACTACGGGGCTCC
27._GC-01-006-1-06
CTAACGCCCTGGGGAACTACGGGGCTCC
28._NA_33
CTAAGGCCCCCCGGAACTAAGGGGCTCC
29._GC-01-6-1-06
CTAACGCCCTGGGGAACTACGGGGCTCC
30._NA_33
CTAACGCCCTGGGGAACTACGGGGCTCC
31._NA33
CT______CTCC______ACGG______
32._RUQ_1577
AAAAGGGGGGCGCC__AGAAGGCC__CC
33._GC-01-6-1-6
AGAACGGGAGCCCC__AGACGGCC__CC
34._MITC-000715
AGAACGGGAGCCCC__AGACGGCC__CC
35._NA_33
AGAACGGGAGCCCC__AGACGGCC__CC
 293031323334353637383940  
_Input profile
AAGGAACTAGCGACCCGGCCTTGGX_XX_X
1._RUQ_1577
________AG________CC____X_XX_X
2._RUQ_1577
AA__AACTAGCGACCCGGCC____X_XX_X
3._NA_33
AAGGAACTAGGGACCCGGCCTTGGX_XX_X
4._NA_33
AGGGATCTGGCCACCTGGACTTGGX_XX_X
5._NA_33
AGGGATCTGGCCACCTGGACTTGGX_XX_X
6._NA_33
AGGGATCTGGCCACCTGGACTTGGX_XX_X
7._GC-01-6-1-06
AGGGATCTGGCCACCTGGACTTGGX_XX_X
8._GC-01-6-1-06
AGGGATCTGGCCACCTGGACTTGGX_XX_X
9._GC-01-6-1-06
AGGGATCTGGCCACCTGGACTTGGX_XX_X
10._GC-01-006-1-06
AGGGATCTGGCCACCTGGACTTGGX_XX_X
11._GC-01-006-1-06
AGGGATCTGGCCACCTGGACTTGGX_XX_X
12._GC-01-006-1-06
AGGGATCTGGCCACCTGGACTTGGX_XX_X
13._GC-01-006-1-06
AGGGATCTGGCCACCTGGACTTGGX_XX_X
14._NA_33
AGGGATCTGGCCACCTGGACTTGGX_XX_X
15._NA_33
AGGGATCTGGCCACCTGGACTTGGX_XX_X
16._NA_33
AGGGATCTGGCCACCTGGACTTGGX_XX_X
17._NA_33
AGGGATCTGGCCACCTGGACTTGGX_XX_X
18._NA_33
AGGGATCTGGCCACCTGGACTTGGX_XX_X
19._NA_33
AGGGATCTGGCCACCTGGACTTGGX_XX_X
20._NA_33
AGGGATCTGGCCACCTGGACTTGGX_XX_X
21._NA_33
AGGGATCTGGCCACCTGGACTTGGX_XX_X
22._NA_33
AGGGATCTGGCCACCTGGACTTGGX_XX_X
23._NA_33
AGGGATCTGGCCACCTGGACTTGGX_XX_X
24._GC-01-006-1-06
AGGGATCTGGCCACCTGGACTTGGX_XX_X
25._GC-01-006-1-06
AGGGATCTGGCCACCTGGACTTGGX_XX_X
26._GC-01-006-1-06
AGGGATCTGGCCACCTGGACTTGGX_XX_X
27._GC-01-006-1-06
AGGGATCTGGCCACCTGGACTTGGX_XX_X
28._NA_33
AAGGATTTAGCGAACTGGACATGGX_XX_X
29._GC-01-6-1-06
AGGGATCTGGCCACCTGGACTTGGX_XX_X
30._NA_33
AGGGATCTGGCCACCTGGACTTGGX_XX_X
31._NA33
____AT__GGGGACCT__AC____X_XX_X
32._RUQ_1577
__GGAAAGAGCGACGGCCCCTTGGX_XX_X
33._GC-01-6-1-6
__GGATAGGGGGACAGCCACTTGGX_XX_X
34._MITC-000715
__GGATAGGGGGACAGCCACTTGGX_XX_X
35._NA_33
__GGATAGGGGGACAGCCACTTGGX_XX_X

Input profile: NA_33 RUQ_1577

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

1._NA_33 RUQ_1577

identical
13 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

2._NA_33 RUQ_1577

97.9 %
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

3._NA_33

97.5 %
40 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 4A D371 T2
 Dapeng Zhang, 2016

4._NA_33

85 %
40 shared markers

Indonesian Coffee and Cocoa Research Institute (ICCRI), Indonesia
Location: KW 397 I-032
 Dapeng Zhang, 2016

5._NA_33

85 %
40 shared markers

Malaysian Cocoa Board (MCB), Malaysia
Location: Row 24 C0211 44
 Dapeng Zhang, 2016

6._NA_33

82.5 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1104 14 > F
 Dapeng Zhang, 2016

7._NA_33 GC-01-6-1-06

82.5 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 1, Rep: 4, Tree: PL12
Notes: PL12 FP4
 Mars, 2018

8._NA_33 GC-01-6-1-06

82.5 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 1, Rep: 4, Tree: PL3
Notes: PL3 FP2
 Mars, 2018

9._NA_33 GC-01-6-1-06

82.5 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 1, Rep: 4, Tree: PL14
Notes: PL14 FP3
 Mars, 2018

10._NA_33 GC-01-006-1-06

82.5 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP5
 Mars, 2018

11._NA_33 GC-01-006-1-06

82.5 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP6
 Mars, 2018

12._NA_33 GC-01-006-1-06

82.5 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6 > FP11
 Mars, 2018

13._NA_33 GC-01-006-1-06

82.5 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7 > FP12
 Mars, 2018

14._NA_33

82.5 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1104 1 > FP
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

15._NA_33

82.5 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1104 10 > F
 Dapeng Zhang, 2016

16._NA_33

82.5 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1104 11 > F
 Dapeng Zhang, 2016

17._NA_33

82.5 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1104 12 > F
 Dapeng Zhang, 2016

18._NA_33

82.5 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1104 15 > F
 Dapeng Zhang, 2016

19._NA_33

82.5 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1104 16 > F
 Dapeng Zhang, 2016

20._NA_33

82.5 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1104 2 > FP
 Dapeng Zhang, 2016

21._NA_33

82.5 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1104 3 > FP
 Dapeng Zhang, 2016

22._NA_33

82.5 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1104 6 > FP
 Dapeng Zhang, 2016

23._NA_33

82.5 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1104 7 > FP
 Dapeng Zhang, 2016

24._NA_33 GC-01-006-1-06

82.5 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10 > FP8
 Mars, 2018

25._NA_33 GC-01-006-1-06

82.5 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11 > FP9
 Mars, 2018

26._NA_33 GC-01-006-1-06

82.5 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15 > FP13
 Mars, 2018

27._NA_33 GC-01-006-1-06

82.5 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16 > FP14
 Mars, 2018

28._NA_33

82.5 %
40 shared markers

Cocoa Research Institute of Ghana (CRIG), Ghana
Location: M6 18, 19
 Dapeng Zhang, 2016

29._NA_33 GC-01-6-1-06

82.1 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 1, Rep: 4, Tree: PL9
Notes: PL9 FP1
 Mars, 2018

30._NA_33

82.1 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1104 9 > FP
 Dapeng Zhang, 2016

31._NA_33 NA33

57.7 %
13 shared markers

Center for Forestry Research and Technology Transfer, Vietnam
Location: CEFORTT
 Jocelyn De Wever et al., 2019

32._NA_33 RUQ_1577

52.9 %
35 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

33._NA_33 GC-01-6-1-6

42.9 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 1, Rep: 4, Tree: 1 > FP5
Notes: Brazil_Selections_Poss_grandparent
 Mars, 2018

34._NA_33 MITC-000715

42.9 %
35 shared markers

USDA-SHRS, United States of America
 Mars, 2018

35._NA_33

41.2 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: FP 4
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP998 15TcSNP994
16TcSNP953 17TcSNP929 18TcSNP917 19TcSNP891 20TcSNP872
21TcSNP723 22TcSNP645 23TcSNP619 24TcSNP591 25TcSNP577
26TcSNP560 27TcSNP534 28TcSNP529 29TcSNP469 30TcSNP429
31TcSNP372 32TcSNP242 33TcSNP230 34TcSNP226 35TcSNP193
36TcSNP151 37TcSNP150 38TcSNP144 39TcSNP32 40TcSNP25