SNP Profiles of NA 26   View Data

 Show/Hide Profiles

 Key

 1234567891011121314
_Input profile
CCAACGTTTTCCTTTTCCCCAAAGCTAG
1._GC-04-021-2-03
CCAACGTTTTCCTTTTCCCCAAAGCTAG
2._GC-04-021-2-03
CCAACGTTTTCCTTTTCCCCAAAGCTAG
3._GC-04-021-2-03
CCAACGTTTTCCTTTTCCCCAAAGCTAG
4._GC-04-021-2-03
CCAACGTTTTCCTTTTCCCCAAAGCTAG
5._GC-04-021-2-03
CCAACGTTTTCCTTTTCCCCAAAGCTAG
6._NA_26
CCAACGTTTTCCTTTTCCCCAAAGCTAG
7._NA_26
CCAACGTTTTCCTTTTCCCCAAAGCTAG
8._NA_26
CCAACGTTTTCCTTTTCCCCAAAGCTAG
9._NA_26
CCAACGTTTTCCTTTTCCCCAAAGCTAG
10._RUQ_1230
__AACGTT______TT________CTAG
11._RUQ_1230
____CG________TT__CC__AG__AG
12._RUQ_1230
CCAGCGTTTTCCTTTTCCCCAAAGCTAG
13._RUQ_1230
____CG__________________CT__
14._NA_26
CCAGCGTTCTCCTTGTCTCCATGGCCAA
15._RUQ_1230
GGAACGAAAACCAAAA____AAAGAGAG
16._MITC-000034
GGAACGAAAACCAAAA____AAAGAGAG
 1516171819202122232425262728
_Input profile
CTAAGGCTCCCCGGAACCACGGGGCTCC
1._GC-04-021-2-03
CTAAGGCTCCCCGGAACCACGGGGCTCC
2._GC-04-021-2-03
CTAAGGCTCCCCGGAACCACGGGGCTCC
3._GC-04-021-2-03
CTAAGGCTCCCCGGAACCACGGGGCTCC
4._GC-04-021-2-03
CTAAGGCTCCCCGGAACCACGGGGCTCC
5._GC-04-021-2-03
CTAAGGCTCCCCGGAACCACGGGGCTCC
6._NA_26
CTAAGGCTCCCCGGAACCACGGGGCTCC
7._NA_26
CTAAGGCTCCCCGGAACCACGGGGCTCC
8._NA_26
CTAAGGCTCCCCGGAACCACGGGGCTCC
9._NA_26
CTAAGGCTCCCCGGAACCACGGGGCTCC
10._RUQ_1230
________CCCCGG__CCACGGGGCTCC
11._RUQ_1230
__________CCGGAA__ACGG____CC
12._RUQ_1230
CTAAGGCTCCCCGGAACCACGGGGCTCC
13._RUQ_1230
CT______CCGG______ACGG______
14._NA_26
TTAAGGCCTTCCGGAACCACGGGGCCAC
15._RUQ_1230
AGAAGGAGGGGGCC__GGACGGCC__CC
16._MITC-000034
AGAAGGAGGGGGCC__GGACGGCC__CC
 293031323334353637383940  
_Input profile
AAGGATCTAGCGAACTGGACTTGGX_XX_X
1._GC-04-021-2-03
AAGGATCTAGCGAACTGGACTTGGX_XX_X
2._GC-04-021-2-03
AAGGATCTAGCGAACTGGACTTGGX_XX_X
3._GC-04-021-2-03
AAGGATCTAGCGAACTGGACTTGGX_XX_X
4._GC-04-021-2-03
AAGGATCTAGCGAACTGGACTTGGX_XX_X
5._GC-04-021-2-03
AAGGATCTAGCGAACTGGACTTGGX_XX_X
6._NA_26
AAGGATCTAGCGAACTGGACTTGGX_XX_X
7._NA_26
AAGGATCTAGCGAACTGGACTTGGX_XX_X
8._NA_26
AAGGATCTAGCGAACTGGACTTGGX_XX_X
9._NA_26
AAGGATCTAGCGAACTGGACTTGGX_XX_X
10._RUQ_1230
AA__ATCTAGCGAACTGGAC____X_XX_X
11._RUQ_1230
________AG________AC____X_XX_X
12._RUQ_1230
AAGGATCTAGCGAACTGGACTTGGX_XX_X
13._RUQ_1230
____AT__AGCGAACT__AC____X_XX_X
14._NA_26
AAAGATCTAGGGACCTTTCCATCGX_XX_X
15._RUQ_1230
__GGATAGAGCGAAAGCCACTTGGX_XX_X
16._MITC-000034
__GGATAGAGCGAAAGCCACTTGGX_XX_X

Input profile: NA_26

 
Mars Center for Cocoa Science, Brazil
Location: 4203 4 > FP
 Dapeng Zhang, 2016

1._NA_26 GC-04-021-2-03

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8 > FP3
 Mars, 2018

2._NA_26 GC-04-021-2-03

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7 > FP2
 Mars, 2018

3._NA_26 GC-04-021-2-03

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6 > FP1
 Mars, 2018

4._NA_26 GC-04-021-2-03

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP4
 Mars, 2018

5._NA_26 GC-04-021-2-03

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

6._NA_26

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4203 8 > FP
 Dapeng Zhang, 2016

7._NA_26

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4203 7 > FP
 Dapeng Zhang, 2016

8._NA_26

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4203 6 > FP
 Dapeng Zhang, 2016

9._NA_26

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4203 2
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

10._NA_26 RUQ_1230

identical
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

11._NA_26 RUQ_1230

identical
13 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

12._NA_26 RUQ_1230

98.8 %
40 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

13._NA_26 RUQ_1230

92.3 %
13 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Location: GBR207
 Jocelyn De Wever et al., 2019

14._NA_26

72.5 %
40 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 5B E352 T5
 Dapeng Zhang, 2016

15._NA_26 RUQ_1230

54.3 %
35 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

16._NA_26 MITC-000034

54.3 %
35 shared markers

USDA-SHRS, United States of America
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP998 15TcSNP994
16TcSNP953 17TcSNP929 18TcSNP917 19TcSNP891 20TcSNP872
21TcSNP723 22TcSNP645 23TcSNP619 24TcSNP591 25TcSNP577
26TcSNP560 27TcSNP534 28TcSNP529 29TcSNP469 30TcSNP429
31TcSNP372 32TcSNP242 33TcSNP230 34TcSNP226 35TcSNP193
36TcSNP151 37TcSNP150 38TcSNP144 39TcSNP32 40TcSNP25