SNP Profiles of MO 9   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
CTAACGTTCTACCCGTCTCTAGCTAGCT
1._MO_9
CTAACGTTCTACCCGTCTCTAGCTAGCT
2._GC-05-071-2-22
CTAACGTTCTACCCGTCTCTAGCTAGCT
3._GC-05-119-3-21
CTAACGTTCTACCCGTCTCTAGCTAGCT
4._GC-05-071-2-22
CTAACGTTCTACCCGTCTCTAGCTAGCT
5._GC-05-071-2-22
CTAACGTTCTACCCGTCTCTAGCTAGCT
6._GC-05-071-2-22
CTAACGTTCTACCCGTCTCTAGCTAGCT
7._MO_9
CTAACGTTCTACCCGTCTCTAGCTAGCT
8._MO_9
CTAACGTTCTACCCGTCTCTAGCTAGCT
9._MO_9
CTAACGTTCTACCCGTCTCTAGCTAGCT
10._MO_9
CCGGCGCTTTACCCTTCCCCGGCCAGCT
11._GC-05-119-3-21
CCGGCGCTTTACCCTTCCCCGGCCAGCT
12._MO_9
CCGGCGCTTTACCCTTCCCCGGCCAGCT
13._GC-05-119-3-21
CCGGCGCTTTACCCTTCCCCGGCCAGCT
14._GC-05-119-3-21
CCGGCGCTTTACCCTTCCCCGGCCAGCT
15._GC-05-071-2-22
CCGGCGCTTTACCCTTCCCCGGCCAGCT
16._GC-05-071-2-22
CCGGCGCTTTACCCTTCCCCGGCCAGCT
17._MO_9
CCGGCGCTTTACCCTTCCCCGGCCAGCT
18._MO_9
CCGGCGCTTTACCCTTCCCCGGCCAGCT
19._MO_9
CCGGCGCTTTACCCTTCCCCGGCCAGCT
20._MO_9
CCGGCGCTTTACCCTTCCCCGGCCAGCT
21._RUQ_1691
____CG________TT__CCGG__AG__
22._RUQ_1691
GGGGCGAGAAACGGAA____GGGGAGAG
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
ATCGCTCTCCGTAATTACCGGTCTACAG
1._MO_9
ATCGCTCTCCGTAATTACCGGTCTACAG
2._GC-05-071-2-22
ATCGCTCTCCGTAATTACCGGTCTACAG
3._GC-05-119-3-21
ATCGCTCTCCGTAATTACCGGTCTACAG
4._GC-05-071-2-22
ATCGCTCTCCGTAATTACCGGTCTACAG
5._GC-05-071-2-22
ATCGCTCTCCGTAATTACCGGTCTACAG
6._GC-05-071-2-22
ATCGCTCTCCGTAATTACCGGTCTACAG
7._MO_9
ATCGCTCTCCGTAATTACCGGTCTACAG
8._MO_9
ATCGCTCTCCGTAATTACCGGTCTACAG
9._MO_9
ATCGCTCTCCGTAATTACCGGTCTACAG
10._MO_9
AACGCTCCGGGGAATTCCGGGTCTCCAA
11._GC-05-119-3-21
AACGCTCCGGGGAATTCCGGGTCTCCAA
12._MO_9
AACGCTCCGGGGAATTCCGGGTCTCCAA
13._GC-05-119-3-21
AACGCTCCGGGGAATTCCGGGTCTCCAA
14._GC-05-119-3-21
AACGCTCCGGGGAATTCCGGGTCTCCAA
15._GC-05-071-2-22
AACGCTCCGGGGAATTCCGGGTCTCCAA
16._GC-05-071-2-22
AACGCTCCGGGGAATTCCGGGTCTCCAA
17._MO_9
AACGCTCCGGGGAATTCCGGGTCTCCAA
18._MO_9
AACGCTCCGGGGAATTCCGGGTCTCCAA
19._MO_9
AACGCTCCGGGGAATTCCGGGTCTCCAA
20._MO_9
AACGCTCCGGGGAATTCCGGGTCTCCAA
21._RUQ_1691
________GGGGAA__CCGG____CC__
22._RUQ_1691
AACGAGGGCCCC__AACCGGAC__CC__
 29 30 31 32 33 34 35 36 37 38 39    
_Input profile
AGATCTAGCGACCTGGAAATCGX_XX_XX_X
1._MO_9
AGATCTAGCGACCTGGAAATCGX_XX_XX_X
2._GC-05-071-2-22
AGATCTAGCGACCTGGAAATCGX_XX_XX_X
3._GC-05-119-3-21
AGATCTAGCGACCTGGAAATCGX_XX_XX_X
4._GC-05-071-2-22
AGATCTAGCGACCTGGAAATCGX_XX_XX_X
5._GC-05-071-2-22
AGATCTAGCGACCTGGAAATCGX_XX_XX_X
6._GC-05-071-2-22
AGATCTAGCGACCTGGAAATCGX_XX_XX_X
7._MO_9
AGATCTAGCGACCTGGAAATCGX_XX_XX_X
8._MO_9
AGATCTAGCGACCTGGAAATCGX_XX_XX_X
9._MO_9
AGATCTAGCGACCTGGAAATCGX_XX_XX_X
10._MO_9
GGAACCAA__ACCCGTACAAGGX_XX_XX_X
11._GC-05-119-3-21
GGAACCAACC__CCGTACAAGGX_XX_XX_X
12._MO_9
GGAACCAACC__CCGTACAAGGX_XX_XX_X
13._GC-05-119-3-21
GGAACCAACCAACCGTACAAGGX_XX_XX_X
14._GC-05-119-3-21
GGAACCAACCAACCGTACAAGGX_XX_XX_X
15._GC-05-071-2-22
GGAACCAACCAACCGTACAAGGX_XX_XX_X
16._GC-05-071-2-22
GGAACCAACCAACCGTACAAGGX_XX_XX_X
17._MO_9
GGAACCAACCAACCGTACAAGGX_XX_XX_X
18._MO_9
GGAACCAACCAACCGTACAAGGX_XX_XX_X
19._MO_9
GGAACCAACCAACCGTACAAGGX_XX_XX_X
20._MO_9
GGAACCAACCAACCGTACAAGGX_XX_XX_X
21._RUQ_1691
______AA________AC____X_XX_XX_X
22._RUQ_1691
GGAAGGAAGGACGGACACAAGGX_XX_XX_X

Input profile: MO_9

 
Mars Center for Cocoa Science, Brazil
Location: 5222 2 > FP
 Dapeng Zhang, 2016

1._MO_9

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5321 5
 Dapeng Zhang, 2016

2._MO_9 GC-05-071-2-22

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

3._MO_9 GC-05-119-3-21

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

4._MO_9 GC-05-071-2-22

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP4
 Mars, 2018

5._MO_9 GC-05-071-2-22

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP3
 Mars, 2018

6._MO_9 GC-05-071-2-22

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

7._MO_9

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5222 2 > FP
 Dapeng Zhang, 2016

8._MO_9

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5222 3 > FP
 Dapeng Zhang, 2016

9._MO_9

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5222 4 > FP
 Dapeng Zhang, 2016

10._MO_9

63.2 %
38 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D835
 Dapeng Zhang, 2016

11._MO_9 GC-05-119-3-21

61.8 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP4
 Mars, 2018

12._MO_9

61.8 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5321 3 > FP
 Dapeng Zhang, 2016

13._MO_9 GC-05-119-3-21

61.5 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP3
 Mars, 2018

14._MO_9 GC-05-119-3-21

61.5 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

15._MO_9 GC-05-071-2-22

61.5 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

16._MO_9 GC-05-071-2-22

61.5 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

17._MO_9

61.5 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5222 5
 Dapeng Zhang, 2016

18._MO_9

61.5 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5222 1 > FP
 Dapeng Zhang, 2016

19._MO_9

61.5 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5321 2
 Dapeng Zhang, 2016

20._MO_9

61.5 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5321 4 > FP
 Dapeng Zhang, 2016

21._MO_9 RUQ_1691

57.7 %
13 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

22._MO_9 RUQ_1691

35.3 %
34 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1062 12TcSNP1060 13TcSNP998 14TcSNP994 15TcSNP953
16TcSNP929 17TcSNP917 18TcSNP891 19TcSNP872 20TcSNP723
21TcSNP645 22TcSNP619 23TcSNP591 24TcSNP577 25TcSNP560
26TcSNP534 27TcSNP529 28TcSNP469 29TcSNP429 30TcSNP372
31TcSNP242 32TcSNP230 33TcSNP226 34TcSNP193 35TcSNP151
36TcSNP150 37TcSNP144 38TcSNP32 39TcSNP25