SNP Profiles of MO 9   View Data

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 Key

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_Input profile
CTAACGTTCTACCCGTCTCTAAAGCTAG
1._MO_9
CTAACGTTCTACCCGTCTCTAAAGCTAG
2._GC-05-119-3-21
CTAACGTTCTACCCGTCTCTAAAGCTAG
3._GC-05-071-2-22
CTAACGTTCTACCCGTCTCTAAAGCTAG
4._GC-05-071-2-22
CTAACGTTCTACCCGTCTCTAAAGCTAG
5._GC-05-071-2-22
CTAACGTTCTACCCGTCTCTAAAGCTAG
6._MO_9
CTAACGTTCTACCCGTCTCTAAAGCTAG
7._MO_9
CTAACGTTCTACCCGTCTCTAAAGCTAG
8._GC-05-071-2-22
CTAACGTTCTACCCGTCTCT_AGCTAG
9._MO_9
CTAACGTTCTACCCGTCTCT_AGCTAG
10._MO_9
CCGGCGCTTTACCCTTCCCCAAGGCCAG
11._GC-05-119-3-21
CCGGCGCTTTACCCTTCCCCAAGGCCAG
12._MO_9
CCGGCGCTTTACCCTTCCCCAAGGCCAG
13._GC-05-119-3-21
CCGGCGCTTTACCCTTCCCCAAGGCCAG
14._GC-05-119-3-21
CCGGCGCTTTACCCTTCCCCAAGGCCAG
15._GC-05-071-2-22
CCGGCGCTTTACCCTTCCCCAAGGCCAG
16._GC-05-071-2-22
CCGGCGCTTTACCCTTCCCCAAGGCCAG
17._MO_9
CCGGCGCTTTACCCTTCCCCAAGGCCAG
18._MO_9
CCGGCGCTTTACCCTTCCCCAAGGCCAG
19._MO_9
CCGGCGCTTTACCCTTCCCCAAGGCCAG
20._MO_9
CCGGCGCTTTACCCTTCCCCAAGGCCAG
21._RUQ_1691
__CG____TT_CC_GG_AG
22._RUQ_1691
GGGGCGAGAAACGGAA__AAGGGGAG
 1516171819202122232425262728
_Input profile
CTATCGCTCTCCGTAATTACCGGTCTAC
1._MO_9
CTATCGCTCTCCGTAATTACCGGTCTAC
2._GC-05-119-3-21
CTATCGCTCTCCGTAATTACCGGTCTAC
3._GC-05-071-2-22
CTATCGCTCTCCGTAATTACCGGTCTAC
4._GC-05-071-2-22
CTATCGCTCTCCGTAATTACCGGTCTAC
5._GC-05-071-2-22
CTATCGCTCTCCGTAATTACCGGTCTAC
6._MO_9
CTATCGCTCTCCGTAATTACCGGTCTAC
7._MO_9
CTATCGCTCTCCGTAATTACCGGTCTAC
8._GC-05-071-2-22
CTATCGCTCTCCGTAATTACCGGTCTAC
9._MO_9
CTATCGCTCTCCGTAATTACCGGTCTAC
10._MO_9
CTAACGCTCCGGGGAATTCCGGGTCTCC
11._GC-05-119-3-21
CTAACGCTCCGGGGAATTCCGGGTCTCC
12._MO_9
CTAACGCTCCGGGGAATTCCGGGTCTCC
13._GC-05-119-3-21
CTAACGCTCCGGGGAATTCCGGGTCTCC
14._GC-05-119-3-21
CTAACGCTCCGGGGAATTCCGGGTCTCC
15._GC-05-071-2-22
CTAACGCTCCGGGGAATTCCGGGTCTCC
16._GC-05-071-2-22
CTAACGCTCCGGGGAATTCCGGGTCTCC
17._MO_9
CTAACGCTCCGGGGAATTCCGGGTCTCC
18._MO_9
CTAACGCTCCGGGGAATTCCGGGTCTCC
19._MO_9
CTAACGCTCCGGGGAATTCCGGGTCTCC
20._MO_9
CTAACGCTCCGGGGAATTCCGGGTCTCC
21._RUQ_1691
_____GGGGAA_CCGG__CC
22._RUQ_1691
AGAACGAGGGCCCC_AACCGGAC_CC
 293031323334353637383940  
_Input profile
AGAGATCTAGCGACCTGGAAATCGX_XX_X
1._MO_9
AGAGATCTAGCGACCTGGAAATCGX_XX_X
2._GC-05-119-3-21
AGAGATCTAGCGACCTGGAAATCGX_XX_X
3._GC-05-071-2-22
AGAGATCTAGCGACCTGGAAATCGX_XX_X
4._GC-05-071-2-22
AGAGATCTAGCGACCTGGAAATCGX_XX_X
5._GC-05-071-2-22
AGAGATCTAGCGACCTGGAAATCGX_XX_X
6._MO_9
AGAGATCTAGCGACCTGGAAATCGX_XX_X
7._MO_9
AGAGATCTAGCGACCTGGAAATCGX_XX_X
8._GC-05-071-2-22
AGAGATCTAGCGACCTGGAAATCGX_XX_X
9._MO_9
AGAGATCTAGCGACCTGGAAATCGX_XX_X
10._MO_9
AAGGAACCAA_ACCCGTACAAGGX_XX_X
11._GC-05-119-3-21
AAGGAACCAACC_CCGTACAAGGX_XX_X
12._MO_9
AAGGAACCAACC_CCGTACAAGGX_XX_X
13._GC-05-119-3-21
AAGGAACCAACCAACCGTACAAGGX_XX_X
14._GC-05-119-3-21
AAGGAACCAACCAACCGTACAAGGX_XX_X
15._GC-05-071-2-22
AAGGAACCAACCAACCGTACAAGGX_XX_X
16._GC-05-071-2-22
AAGGAACCAACCAACCGTACAAGGX_XX_X
17._MO_9
AAGGAACCAACCAACCGTACAAGGX_XX_X
18._MO_9
AAGGAACCAACCAACCGTACAAGGX_XX_X
19._MO_9
AAGGAACCAACCAACCGTACAAGGX_XX_X
20._MO_9
AAGGAACCAACCAACCGTACAAGGX_XX_X
21._RUQ_1691
____AA____AC__X_XX_X
22._RUQ_1691
_GGAAGGAAGGACGGACACAAGGX_XX_X

Input profile: MO_9

 
Mars Center for Cocoa Science, Brazil
Location: 5222 2 > FP
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

1._MO_9

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5321 5
 Dapeng Zhang, 2016

2._MO_9 GC-05-119-3-21

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

3._MO_9 GC-05-071-2-22

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP4
 Mars, 2018

4._MO_9 GC-05-071-2-22

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP3
 Mars, 2018

5._MO_9 GC-05-071-2-22

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

6._MO_9

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5222 3 > FP
 Dapeng Zhang, 2016

7._MO_9

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5222 4 > FP
 Dapeng Zhang, 2016

8._MO_9 GC-05-071-2-22

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

9._MO_9

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5222 2 > FP
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

10._MO_9

64.1 %
39 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D835
 Dapeng Zhang, 2016

11._MO_9 GC-05-119-3-21

62.8 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP4
 Mars, 2018

12._MO_9

62.8 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5321 3 > FP
 Dapeng Zhang, 2016

13._MO_9 GC-05-119-3-21

62.5 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP3
 Mars, 2018

14._MO_9 GC-05-119-3-21

62.5 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

15._MO_9 GC-05-071-2-22

62.5 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

16._MO_9 GC-05-071-2-22

62.5 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

17._MO_9

62.5 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5222 5
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

18._MO_9

62.5 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5222 1 > FP
 Dapeng Zhang, 2016

19._MO_9

62.5 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5321 2
 Dapeng Zhang, 2016

20._MO_9

62.5 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5321 4 > FP
 Dapeng Zhang, 2016

21._MO_9 RUQ_1691

57.7 %
13 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

22._MO_9 RUQ_1691

37.1 %
35 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP998 15TcSNP994
16TcSNP953 17TcSNP929 18TcSNP917 19TcSNP891 20TcSNP872
21TcSNP723 22TcSNP645 23TcSNP619 24TcSNP591 25TcSNP577
26TcSNP560 27TcSNP534 28TcSNP529 29TcSNP469 30TcSNP429
31TcSNP372 32TcSNP242 33TcSNP230 34TcSNP226 35TcSNP193
36TcSNP151 37TcSNP150 38TcSNP144 39TcSNP32 40TcSNP25