SNP Profiles of PA 72 [PER]   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
CCGGCGCTTTACCCTTCCCCAAGGCCAG
1._MO_9___
CCGGCGCTTTACCCTTCCCCAAGGCCAG
2._MO_9___
CCGGCGCTTTACCCTTCCCCAAGGCCAG
3._MO_9___
CCGGCGCTTTACCCTTCCCCAAGGCCAG
4._MO_9___
CCGGCGCTTTACCCTTCCCCAAGGCCAG
5._MO_9___
CCGGCGCTTTACCCTTCCCCAAGGCCAG
6._MO_9___
CCGGCGCTTTACCCTTCCCCAAGGCCAG
7._MO_9___
CCGGCGCTTTACCCTTCCCCAAGGCCAG
8._MO_9___
CCGGCGCTTTACCCTTCCCCAAGGCCAG
9._MO_9___
CCGGCGCTTTACCCTTCCCCAAGGCCAG
10._MO_9___
____CG________TT__CC__GG__AG
11._MO_9___
CCGGCGCTTTACCCTTCCCCAAGGCCAG
12._MO_9___
CTAACGTTCTACCCGTCTCTAAAGCTAG
13._MO_9___
CTAACGTTCTACCCGTCTCTAAAGCTAG
14._MO_9___
CTAACGTTCTACCCGTCTCTAAAGCTAG
15._MO_9___
CTAACGTTCTACCCGTCTCTAAAGCTAG
16._MO_9___
CTAACGTTCTACCCGTCTCTAAAGCTAG
17._MO_9___
CTAACGTTCTACCCGTCTCTAAAGCTAG
18._MO_9___
CTAACGTTCTACCCGTCTCTAAAGCTAG
19._MO_9___
CTAACGTTCTACCCGTCTCTAAAGCTAG
20._MO_9___
CTAACGTTCTACCCGTCTCT__AGCTAG
21._MO_9___
CTAACGTTCTACCCGTCTCT__AGCTAG
22._MO_9___
GGGGCGAGAAACGGAA____AAGGGGAG
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
CTAACGCTCCGGGGAATTCCGGGTCTCC
1._MO_9___
CTAACGCTCCGGGGAATTCCGGGTCTCC
2._MO_9___
CTAACGCTCCGGGGAATTCCGGGTCTCC
3._MO_9___
CTAACGCTCCGGGGAATTCCGGGTCTCC
4._MO_9___
CTAACGCTCCGGGGAATTCCGGGTCTCC
5._MO_9___
CTAACGCTCCGGGGAATTCCGGGTCTCC
6._MO_9___
CTAACGCTCCGGGGAATTCCGGGTCTCC
7._MO_9___
CTAACGCTCCGGGGAATTCCGGGTCTCC
8._MO_9___
CTAACGCTCCGGGGAATTCCGGGTCTCC
9._MO_9___
CTAACGCTCCGGGGAATTCCGGGTCTCC
10._MO_9___
__________GGGGAA__CCGG____CC
11._MO_9___
CTAACGCTCCGGGGAATTCCGGGTCTCC
12._MO_9___
CTATCGCTCTCCGTAATTACCGGTCTAC
13._MO_9___
CTATCGCTCTCCGTAATTACCGGTCTAC
14._MO_9___
CTATCGCTCTCCGTAATTACCGGTCTAC
15._MO_9___
CTATCGCTCTCCGTAATTACCGGTCTAC
16._MO_9___
CTATCGCTCTCCGTAATTACCGGTCTAC
17._MO_9___
CTATCGCTCTCCGTAATTACCGGTCTAC
18._MO_9___
CTATCGCTCTCCGTAATTACCGGTCTAC
19._MO_9___
CTATCGCTCTCCGTAATTACCGGTCTAC
20._MO_9___
CTATCGCTCTCCGTAATTACCGGTCTAC
21._MO_9___
CTATCGCTCTCCGTAATTACCGGTCTAC
22._MO_9___
AGAACGAGGGCCCC__AACCGGAC__CC
 29 30 31 32 33 34 35 36 37 38 39 40   
_Input profile
AAGGAACCAACCAACCGTACAAGGX_XX_X
1._MO_9___
AAGGAACCAACCAACCGTACAAGGX_XX_X
2._MO_9___
AAGGAACCAACCAACCGTACAAGGX_XX_X
3._MO_9___
AAGGAACCAACCAACCGTACAAGGX_XX_X
4._MO_9___
AAGGAACCAACCAACCGTACAAGGX_XX_X
5._MO_9___
AAGGAACCAACCAACCGTACAAGGX_XX_X
6._MO_9___
AAGGAACCAACCAACCGTACAAGGX_XX_X
7._MO_9___
AAGGAACCAACCAACCGTACAAGGX_XX_X
8._MO_9___
AAGGAACCAACC__CCGTACAAGGX_XX_X
9._MO_9___
AAGGAACCAACC__CCGTACAAGGX_XX_X
10._MO_9___
________AA________AC____X_XX_X
11._MO_9___
AAGGAACCAA__ACCCGTACAAGGX_XX_X
12._MO_9___
AGAGATCTAGCGACCTGGAAATCGX_XX_X
13._MO_9___
AGAGATCTAGCGACCTGGAAATCGX_XX_X
14._MO_9___
AGAGATCTAGCGACCTGGAAATCGX_XX_X
15._MO_9___
AGAGATCTAGCGACCTGGAAATCGX_XX_X
16._MO_9___
AGAGATCTAGCGACCTGGAAATCGX_XX_X
17._MO_9___
AGAGATCTAGCGACCTGGAAATCGX_XX_X
18._MO_9___
AGAGATCTAGCGACCTGGAAATCGX_XX_X
19._MO_9___
AGAGATCTAGCGACCTGGAAATCGX_XX_X
20._MO_9___
AGAGATCTAGCGACCTGGAAATCGX_XX_X
21._MO_9___
AGAGATCTAGCGACCTGGAAATCGX_XX_X
22._MO_9___
__GGAAGGAAGGACGGACACAAGGX_XX_X

Input profile: MO_9

 
Mars Center for Cocoa Science, Brazil
Location: 5321 4 > FP
 Dapeng Zhang, 2016

1._MO_9 GC-05-119-3-21

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP3
 Mars, 2018

2._MO_9 GC-05-119-3-21

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

3._MO_9 GC-05-071-2-22

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

4._MO_9 GC-05-071-2-22

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

5._MO_9

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5222 5
 Dapeng Zhang, 2016

6._MO_9

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5222 1 > FP
 Dapeng Zhang, 2016

7._MO_9

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5321 2
 Dapeng Zhang, 2016

8._MO_9 GC-05-119-3-21

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP4
 Mars, 2018

9._MO_9

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5321 3 > FP
 Dapeng Zhang, 2016

10._MO_9 RUQ_1691

identical
13 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

11._MO_9

98.7 %
39 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D835
 Dapeng Zhang, 2016

12._MO_9

62.5 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5321 5
 Dapeng Zhang, 2016

13._MO_9 GC-05-119-3-21

62.5 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

14._MO_9 GC-05-071-2-22

62.5 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP4
 Mars, 2018

15._MO_9 GC-05-071-2-22

62.5 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP3
 Mars, 2018

16._MO_9 GC-05-071-2-22

62.5 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

17._MO_9

62.5 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5222 2 > FP
 Dapeng Zhang, 2016

18._MO_9

62.5 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5222 3 > FP
 Dapeng Zhang, 2016

19._MO_9

62.5 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5222 4 > FP
 Dapeng Zhang, 2016

20._MO_9 GC-05-071-2-22

61.5 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

21._MO_9

61.5 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5222 2 > FP
 Dapeng Zhang, 2016

22._MO_9 RUQ_1691

50 %
35 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP998 15TcSNP994
16TcSNP953 17TcSNP929 18TcSNP917 19TcSNP891 20TcSNP872
21TcSNP723 22TcSNP645 23TcSNP619 24TcSNP591 25TcSNP577
26TcSNP560 27TcSNP534 28TcSNP529 29TcSNP469 30TcSNP429
31TcSNP372 32TcSNP242 33TcSNP230 34TcSNP226 35TcSNP193
36TcSNP151 37TcSNP150 38TcSNP144 39TcSNP32 40TcSNP25