SNP Profiles of LV 20 [POU]   View Data

 Show/Hide Profiles

 Key

 1234567891011121314
_Input profile
TTAGCGCTCTACCTGTCCCTATAGCCAG
1._LV_20_[POU]
TTAGCGCTCTACCTGTCCCTATAGCCAG
2._LV_20_[POU]
TTAGCGCTCTACCTGTCCCTATAGCCAG
3._RUQ_354
__CG____GT_CT_AG_AG
4._RUQ_354
_AGCGCT___GT____CCAG
5._LV_20_[POU]
TTAGCGCTCTAACTGTCCCTATAGCCAG
6._LV_20_[POU]
TTAGCGCTCTAACTGTCCCTATAGCCAG
7._LV_20_[POU]
TTAGCGCTCTAACTGTCCCTATAGCCAG
8._LV_20_[POU]
TTAGCGCTCTAACTGTCCCTATAGCCAG
9._GC-04-027-2-09
TTAGCGCTCTAACTGTCCCTATAGCCAG
10._GC-04-027-2-09
TTAGCGCTCTAACTGTCCCTATAGCCAG
11._GC-04-027-2-09
TTAGCGCTCTAACTGTCCCTATAGCCAG
12._GC-04-027-2-09
TTAGCGCTCTAACTGTCCCTATAGCCAG
13._RUQ_354
AAAGCGAGAGACAGAC__ATAGGGAG
 1516171819202122232425262728
_Input profile
TTATGGCTCTGGGTGGTTCCCGGTTTCC
1._LV_20_[POU]
TTATGGCTCTGGGTGGTTCCCGGTTTCC
2._LV_20_[POU]
TTATGGCTCTGGGTGGTTCCCGGTTTCC
3._RUQ_354
_____GGGTGG_CCCG__CC
4._RUQ_354
____TTGGGT_TTCCCGGTTTCC
5._LV_20_[POU]
TTATGGCTCTGGGTAGTTCCCGGTTTCC
6._LV_20_[POU]
TTATGGCTCTGGGTAGTTCCCGGTTTCC
7._LV_20_[POU]
TTATGGCTCTGGGTAGTTCCCGGTTTCC
8._LV_20_[POU]
TTATGGCTCTGGGTAGTTCCCGGTTTCC
9._GC-04-027-2-09
TTATGGCTCTGGGTAGTTCCCGGTTTCC
10._GC-04-027-2-09
TTATGGCTCTGGGTAGTTCCCGGTTTCC
11._GC-04-027-2-09
TTATGGCTCTGGGTAGTTCCCGGTTTCC
12._GC-04-027-2-09
TTATGGCTCTGGGTAGTTCCCGGTTTCC
13._RUQ_354
AAATGGAGAGCCAC_AACCCGAC_CC
 293031323334353637383940  
_Input profile
AGGGAACCAACCACCTGTCCTTCGX_XX_X
1._LV_20_[POU]
AGGGAACCAACCACCTGTCCTTCGX_XX_X
2._LV_20_[POU]
AGGGAACCAACCACCTGTCCTTCGX_XX_X
3._RUQ_354
____AA____CC__X_XX_X
4._RUQ_354
AG_AACCAACCACCTGTCC__X_XX_X
5._LV_20_[POU]
AGGGAACCAACCACCTGTCCTTCGX_XX_X
6._LV_20_[POU]
AGGGAACCAACCACCTGTCCTTCGX_XX_X
7._LV_20_[POU]
AGGGAACCAACCACCTGTCCTTCGX_XX_X
8._LV_20_[POU]
AGGGAACCAACCACCTGTCCTTCGX_XX_X
9._GC-04-027-2-09
AGGGAACCAACCACCTGTCCTTCGX_XX_X
10._GC-04-027-2-09
AGGGAACCAACCACCTGTCCTTCGX_XX_X
11._GC-04-027-2-09
AGGGAACCAACCACCTGTCCTTCGX_XX_X
12._GC-04-027-2-09
AGGGAACCAACCACCTGTCCTTCGX_XX_X
13._RUQ_354
_GGAAGGAAGGACAGACCCTTCGX_XX_X

Input profile: LV_20_[POU] RUQ_354

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

1._LV_20_[POU]

identical
40 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper C 562
 Dapeng Zhang, 2016

2._LV_20_[POU]

identical
40 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper C 563
 Dapeng Zhang, 2016

3._LV_20_[POU] RUQ_354

identical
13 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

4._LV_20_[POU] RUQ_354

97.9 %
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

5._LV_20_[POU]

97.5 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4209 8 > FP
 Dapeng Zhang, 2016

6._LV_20_[POU]

97.5 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4209 4 > FP
 Dapeng Zhang, 2016

7._LV_20_[POU]

97.5 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4209 3
 Dapeng Zhang, 2016

8._LV_20_[POU]

97.5 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4209 1
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

9._LV_20_[POU] GC-04-027-2-09

97.5 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

10._LV_20_[POU] GC-04-027-2-09

97.5 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

11._LV_20_[POU] GC-04-027-2-09

97.5 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP4
 Mars, 2018

12._LV_20_[POU] GC-04-027-2-09

97.5 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8 > FP3
 Mars, 2018

13._LV_20_[POU] RUQ_354

51.4 %
35 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP998 15TcSNP994
16TcSNP953 17TcSNP929 18TcSNP917 19TcSNP891 20TcSNP872
21TcSNP723 22TcSNP645 23TcSNP619 24TcSNP591 25TcSNP577
26TcSNP560 27TcSNP534 28TcSNP529 29TcSNP469 30TcSNP429
31TcSNP372 32TcSNP242 33TcSNP230 34TcSNP226 35TcSNP193
36TcSNP151 37TcSNP150 38TcSNP144 39TcSNP32 40TcSNP25