SNP Profiles of LCT EEN 37 /F   View Data

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 Key

 1234567891011121314
_Input profile
CCAGCGCTTTCCTTTTCCCCAAAGCCAG
1._GC-08-160-4-03
CCAGCGCTTTCCTTTTCCCCAAAGCCAG
2._GC-02-027-4-03
CCAGCCCTCT_CTGTCTCCATAGCCAG
3._LCT_EEN_37_/F
CCAGCCCTCT_CTGTCTCCATAGCCAG
4._GC-08-160-4-03
CTAACGCTCTACCCGTCTCTAAAGCCAG
5._LCT_EEN_37_/F
CTAACGCTCTACCCGTCTCTAAAGCCAG
6._GC-08-160-4-03
CTAACGCTCTACCCGTCTCTAAAGCCAG
7._LCT_EEN_37_/F
CTAACGCTCTACCCGTCTCTAAAGCCAG
8._GC-08-160-4-03
CTAACGCTCTACCCGTCTCTAAAGCCAG
9._GC-08-160-4-03
CTAACGCTCTACCCGTCTCTAAAGCCAG
10._LCT_EEN_37_/F
CTAACGCTCTACCCGTCTCTAAAGCCAG
11._LCT_EEN_37_/F
CTAACGCTCTACCCGTCTCTAAAGCCAG
12._RUQ_153
_GGCGCT___GG____CCAA
13._GC-02-027-4-03
CCGGCGCTCT_TTGGTTCCATGGCCAA
14._GC-02-027-4-03
CCGGCGCTCT_TTGGTTCCATGGCCAA
15._GC-02-027-4-03
CCGGCGCTCT_TTGGTTCCATGGCCAA
16._GC-02-027-4-03
CCGGCGCTCT_TTGGTTCCATGGCCAA
17._GC-02-027-4-03
CCGGCGCTCT_TTGGTTCCATGGCCAA
18._GC-08-160-4-03
CCGGCGCTCT_TTGGTTCCATGGCCAA
19._GC-08-161-4-04
CCGGCGCTCT_TTGGTTCCATGGCCAA
20._GC-08-161-4-04
CCGGCGCTCT_TTGGTTCCATGGCCAA
21._GC-08-161-4-04
CCGGCGCTCT_TTGGTTCCATGGCCAA
22._GC-08-161-4-04
CCGGCGCTCT_TTGGTTCCATGGCCAA
23._GC-08-161-4-04
CCGGCGCTCT_TTGGTTCCATGGCCAA
24._LCT_EEN_37_/F
CCGGCGCTCT_TTGGTTCCATGGCCAA
25._LCT_EEN_37_/F
CCGGCGCTCT_TTGGTTCCATGGCCAA
26._LCT_EEN_37_/F
CCGGCGCTCT_TTGGTTCCATGGCCAA
27._LCT_EEN_37_/F
CCGGCGCTCT_TTGGTTCCATGGCCAA
28._LCT_EEN_37_/F
CCGGCGCTCT_TTGGTTCCATGGCCAA
29._LCT_EEN_37_/F
CCGGCGCTCT_TTGGTTCCATGGCCAA
30._LCT_EEN_37_/F
CCGGCGCTCT_TTGGTTCCATGGCCAA
31._LCT_EEN_37_/F
CCGGCGCTCT_TTGGTTCCATGGCCAA
32._LCT_EEN_37_/F
CCGGCGCTCT_TTGGTTCCATGGCCAA
33._LCT_EEN_37_/F
CCGGCGCTCT_TTGGTTCCATGGCCAA
34._LCT_EEN_37_/F
CCGGCGCTCT_TTGGTTCCATGGCCAA
35._RUQ_153
CCGGCGCTCTCCTTGGTTCCATGGCCAA
36._RUQ_153
CCGGCGCTCTCCTTGGTTCCATGGCCAA
37._GC-02-027-4-03
CCGGCGCTCT_TTGGTTCCATGGCCAA
38._LCT_EEN_37_/F
CCGGCGCTCT_TTGGTTCCATGGCCAA
39._LCT_EEN_37_/F
-GGCGCTCTCCTTGGTT-ATGGCCAA
40._RUQ_153
GGGGCGAGAG_AACC__ATGGGGAA
 1516171819202122232425262728
_Input profile
CCAACGCTCCGGGGGGCTACCGGTAAGG
1._GC-08-160-4-03
CCAACGCTCCGGGGGGCTACCGGTAAGG
2._GC-02-027-4-03
CCATCGCTCTCGGTAACTCCCGGTACGG
3._LCT_EEN_37_/F
CCATCGCTCTCGGTAACTCCCGGTACGG
4._GC-08-160-4-03
CTATCGCTCTCGGGAGTT_CCGTACAG
5._LCT_EEN_37_/F
CTATCGCTCTCGGGAGTT_CCGTACAG
6._GC-08-160-4-03
CTATCGCTCTCGGGAGTTCCCCGTACAG
7._LCT_EEN_37_/F
CTATCGCTCTCGGGAGTTCCCCGTACAG
8._GC-08-160-4-03
CTATCGCTCTCGGGAGTTCCCCGTACAG
9._GC-08-160-4-03
CTATCGCTCTCGGGAGTTCCCCGTACAG
10._LCT_EEN_37_/F
CTATCGCTCTCGGGAGTTCCCCGTACAG
11._LCT_EEN_37_/F
CTATCGCTCTCGGGAGTTCCCCGTACAG
12._RUQ_153
____TTCGGG_TTCCCGGGACAG
13._GC-02-027-4-03
CTAACGTTTTCGGGGGTTCCGGGGACAG
14._GC-02-027-4-03
CTAACGTTTTCGGGGGTTCCGGGGACAG
15._GC-02-027-4-03
CTAACGTTTTCGGGGGTTCCGGGGACAG
16._GC-02-027-4-03
CTAACGTTTTCGGGGGTTCCGGGGACAG
17._GC-02-027-4-03
CTAACGTTTTCGGGGGTTCCGGGGACAG
18._GC-08-160-4-03
CTAACGTTTTCGGGGGTTCCGGGGACAG
19._GC-08-161-4-04
CTAACGTTTTCGGGGGTTCCGGGGACAG
20._GC-08-161-4-04
CTAACGTTTTCGGGGGTTCCGGGGACAG
21._GC-08-161-4-04
CTAACGTTTTCGGGGGTTCCGGGGACAG
22._GC-08-161-4-04
CTAACGTTTTCGGGGGTTCCGGGGACAG
23._GC-08-161-4-04
CTAACGTTTTCGGGGGTTCCGGGGACAG
24._LCT_EEN_37_/F
CTAACGTTTTCGGGGGTTCCGGGGACAG
25._LCT_EEN_37_/F
CTAACGTTTTCGGGGGTTCCGGGGACAG
26._LCT_EEN_37_/F
CTAACGTTTTCGGGGGTTCCGGGGACAG
27._LCT_EEN_37_/F
CTAACGTTTTCGGGGGTTCCGGGGACAG
28._LCT_EEN_37_/F
CTAACGTTTTCGGGGGTTCCGGGGACAG
29._LCT_EEN_37_/F
CTAACGTTTTCGGGGGTTCCGGGGACAG
30._LCT_EEN_37_/F
CTAACGTTTTCGGGGGTTCCGGGGACAG
31._LCT_EEN_37_/F
CTAACGTTTTCGGGGGTTCCGGGGACAG
32._LCT_EEN_37_/F
CTAACGTTTTCGGGGGTTCCGGGGACAG
33._LCT_EEN_37_/F
CTAACGTTTTCGGGGGTTCCGGGGACAG
34._LCT_EEN_37_/F
CTAACGTTTTCGGGGGTTCCGGGGACAG
35._RUQ_153
CTAACGTTTTCGGGAATTCCGGGGACAG
36._RUQ_153
CTAACGTTTTCGGGAATTCCGGGGACAG
37._GC-02-027-4-03
CTAACGTTTTCGGGGGTTCCGGGGACAG
38._LCT_EEN_37_/F
CTAACGTTTTCGGGGGTTCCGGGGACAG
39._LCT_EEN_37_/F
CTAACGTTTTCGGGAATTCCGGGGACAG
40._RUQ_153
AGAACGAAAACGCC_AACCCGCCAC_
 2930313233343536373839   
_Input profile
GGAACCAGCCAATTTTAAATGGX_XX_XX_X
1._GC-08-160-4-03
GGAACCAGCCAATTTTAAATGGX_XX_XX_X
2._GC-02-027-4-03
AGAACTAGCCCCTTGTCCATCGX_XX_XX_X
3._LCT_EEN_37_/F
AGAACTAGCCCCTTGTCCATCGX_XX_XX_X
4._GC-08-160-4-03
GGAACTAACCACCTGTACATCGX_XX_XX_X
5._LCT_EEN_37_/F
GGAACTAACCACCTGTACATCGX_XX_XX_X
6._GC-08-160-4-03
GGAACTAACCACCTGTACATCGX_XX_XX_X
7._LCT_EEN_37_/F
GGAACTAACCACCTGTACATCGX_XX_XX_X
8._GC-08-160-4-03
GGAACTAACCACCTGTACATCGX_XX_XX_X
9._GC-08-160-4-03
GGAACTAACCACCTGTACATCGX_XX_XX_X
10._LCT_EEN_37_/F
GGAACTAACCACCTGTACATCGX_XX_XX_X
11._LCT_EEN_37_/F
GGAACTAACCACCTGTACATCGX_XX_XX_X
12._RUQ_153
_-CCAGCCCCTTGGAA__X_XX_XX_X
13._GC-02-027-4-03
AAATCCAGCCCCTTGGAAATCGX_XX_XX_X
14._GC-02-027-4-03
AAATCCAGCCCCTTGGAAATCGX_XX_XX_X
15._GC-02-027-4-03
AAATCCAGCCCCTTGGAAATCGX_XX_XX_X
16._GC-02-027-4-03
AAATCCAGCCCCTTGGAAATCGX_XX_XX_X
17._GC-02-027-4-03
AAATCCAGCCCCTTGGAAATCGX_XX_XX_X
18._GC-08-160-4-03
AAATCCAGCCCCTTGGAAATCGX_XX_XX_X
19._GC-08-161-4-04
AAATCCAGCCCCTTGGAAATCGX_XX_XX_X
20._GC-08-161-4-04
AAATCCAGCCCCTTGGAAATCGX_XX_XX_X
21._GC-08-161-4-04
AAATCCAGCCCCTTGGAAATCGX_XX_XX_X
22._GC-08-161-4-04
AAATCCAGCCCCTTGGAAATCGX_XX_XX_X
23._GC-08-161-4-04
AAATCCAGCCCCTTGGAAATCGX_XX_XX_X
24._LCT_EEN_37_/F
AAATCCAGCCCCTTGGAAATCGX_XX_XX_X
25._LCT_EEN_37_/F
AAATCCAGCCCCTTGGAAATCGX_XX_XX_X
26._LCT_EEN_37_/F
AAATCCAGCCCCTTGGAAATCGX_XX_XX_X
27._LCT_EEN_37_/F
AAATCCAGCCCCTTGGAAATCGX_XX_XX_X
28._LCT_EEN_37_/F
AAATCCAGCCCCTTGGAAATCGX_XX_XX_X
29._LCT_EEN_37_/F
AAATCCAGCCCCTTGGAAATCGX_XX_XX_X
30._LCT_EEN_37_/F
AAATCCAGCCCCTTGGAAATCGX_XX_XX_X
31._LCT_EEN_37_/F
AAATCCAGCCCCTTGGAAATCGX_XX_XX_X
32._LCT_EEN_37_/F
AAATCCAGCCCCTTGGAAATCGX_XX_XX_X
33._LCT_EEN_37_/F
AAATCCAGCCCCTTGGAAATCGX_XX_XX_X
34._LCT_EEN_37_/F
AAATCCAGCCCCTTGGAAATCGX_XX_XX_X
35._RUQ_153
AAATCCAGCCCCTTGGAAATGGX_XX_XX_X
36._RUQ_153
AAATCCAGCCCCTTGGAAATGGX_XX_XX_X
37._GC-02-027-4-03
AAATCCAGCCCC_GGAAATCGX_XX_XX_X
38._LCT_EEN_37_/F
AAATCCAGCCCC_GGAAATCGX_XX_XX_X
39._LCT_EEN_37_/F
AAATCCAG-CCTTGGAAATCGX_XX_XX_X
40._RUQ_153
AAATGGAGGGCCAACCAAATCGX_XX_XX_X

Input profile: LCT_EEN_37_/F

 
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Mars Center for Cocoa Science, Brazil
Location: 8403 3
 Dapeng Zhang, 2016

1._LCT_EEN_37_/F GC-08-160-4-03

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

2._LCT_EEN_37_/F GC-02-027-4-03

71.1 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

3._LCT_EEN_37_/F

71.1 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 2403 3
 Dapeng Zhang, 2016

4._LCT_EEN_37_/F GC-08-160-4-03

67.1 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

5._LCT_EEN_37_/F

67.1 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8403 1
 Dapeng Zhang, 2016

6._LCT_EEN_37_/F GC-08-160-4-03

66.7 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

7._LCT_EEN_37_/F

66.7 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8403 7
 Dapeng Zhang, 2016

8._LCT_EEN_37_/F GC-08-160-4-03

66.7 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

9._LCT_EEN_37_/F GC-08-160-4-03

66.7 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

10._LCT_EEN_37_/F

66.7 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8403 2
 Dapeng Zhang, 2016

11._LCT_EEN_37_/F

66.7 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8403 5
 Dapeng Zhang, 2016

12._LCT_EEN_37_/F RUQ_153

63.6 %
22 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

13._LCT_EEN_37_/F GC-02-027-4-03

63.2 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP1
 Mars, 2018

14._LCT_EEN_37_/F GC-02-027-4-03

63.2 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9 > FP2
 Mars, 2018

15._LCT_EEN_37_/F GC-02-027-4-03

63.2 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10 > FP4
 Mars, 2018

16._LCT_EEN_37_/F GC-02-027-4-03

63.2 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

17._LCT_EEN_37_/F GC-02-027-4-03

63.2 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14 > FP3
 Mars, 2018

18._LCT_EEN_37_/F GC-08-160-4-03

63.2 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

19._LCT_EEN_37_/F GC-08-161-4-04

63.2 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

20._LCT_EEN_37_/F GC-08-161-4-04

63.2 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

21._LCT_EEN_37_/F GC-08-161-4-04

63.2 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

22._LCT_EEN_37_/F GC-08-161-4-04

63.2 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

23._LCT_EEN_37_/F GC-08-161-4-04

63.2 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

24._LCT_EEN_37_/F

63.2 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 2403 2 > FP
 Dapeng Zhang, 2016

25._LCT_EEN_37_/F

63.2 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8404 11
 Dapeng Zhang, 2016

26._LCT_EEN_37_/F

63.2 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8404 10
 Dapeng Zhang, 2016

27._LCT_EEN_37_/F

63.2 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8404 9
 Dapeng Zhang, 2016

28._LCT_EEN_37_/F

63.2 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8404 5
 Dapeng Zhang, 2016

29._LCT_EEN_37_/F

63.2 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8404 2
 Dapeng Zhang, 2016

30._LCT_EEN_37_/F

63.2 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8403 4
 Dapeng Zhang, 2016

31._LCT_EEN_37_/F

63.2 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 2403 9 > FP
 Dapeng Zhang, 2016

32._LCT_EEN_37_/F

63.2 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 2403 14 > F
 Dapeng Zhang, 2016

33._LCT_EEN_37_/F

63.2 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 2403 10 > F
 Dapeng Zhang, 2016

34._LCT_EEN_37_/F

63.2 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 2403 12
 Dapeng Zhang, 2016

35._LCT_EEN_37_/F RUQ_153

62.8 %
39 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

36._LCT_EEN_37_/F RUQ_153

62.8 %
39 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

37._LCT_EEN_37_/F GC-02-027-4-03

62.2 %
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

38._LCT_EEN_37_/F

62.2 %
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 2403 4
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

39._LCT_EEN_37_/F

58.3 %
36 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 4A A 133 T3
 Dapeng Zhang, 2014

40._LCT_EEN_37_/F RUQ_153

33.8 %
34 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 

  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP998 15TcSNP994
16TcSNP953 17TcSNP929 18TcSNP917 19TcSNP891 20TcSNP872
21TcSNP723 22TcSNP645 23TcSNP619 24TcSNP591 25TcSNP577
26TcSNP560 27TcSNP529 28TcSNP469 29TcSNP429 30TcSNP372
31TcSNP242 32TcSNP230 33TcSNP226 34TcSNP193 35TcSNP151
36TcSNP150 37TcSNP144 38TcSNP32 39TcSNP25