SNP Profiles of JA 6 /2 [POU]   View Data

 Show/Hide Profiles

 Key

 1234567891011121314
_Input profile
CTAGCGCTCTAACTGTCTCTATAGCCAG
1._JA_6_/2_[POU]
CCGGCCCTCT__CTGTCTCCTTAACCAA
2._JA_6_/2_[POU]
CCGGCCCTCT__CTGTCTCCTTAACCAA
3._JA_6_/2_[POU]
CCGGCCCTCT__CTGTCTCCTTAACCAA
4._JA_6_/2_[POU]
CCGGCCCTCT__CTGTCTCCTTAACCAA
5._JA_6_/2_[POU]
CCGGCCCTCT__CTGTCTCCTTAACCAA
6._JA_6_/2_[POU]
CCGGCCCTCT__CTGTCTCCTTAACCAA
7._JA_6_/2_[POU]
CCGGCCCTCT__CTGTCTCCTTAACCAA
8._JA_6_/2_[POU]
CCGGCCCTCT__CTGTCTCCTTAACCAA
9._JA_6_/2_[POU]
CCGGCCCTCT__CTGTCTCCTTAACCAA
10._JA_6_/2_[POU]
CCGGCCCTCT__CTGTCTCCTTAACCAA
11._GC-08-091-2-14
CCGGCCCTCT__CTGTCTCCTTAACCAA
12._GC-08-091-2-14
CCGGCCCTCT__CTGTCTCCTTAACCAA
13._JA_6_/2_[POU]
CCGGCCCTCTACCTGTCTCC__AACCAA
14._JA_6_/2_[POU]
CCGGCCCTCT__CTGTCTCCTTAACCAA
15._JA_6_/2_[POU]
CCGGCCCTCTCCCTGTCTCCATAACCAA
 1516171819202122232425262728
_Input profile
TTATGGCTCTGGGGAATTCCCGGTCTAC
1._JA_6_/2_[POU]
TTATGGCTCTGGGGAACTCCCCGGCCAA
2._JA_6_/2_[POU]
TTATGGCTCTGGGGAACTCCCCGGCCAA
3._JA_6_/2_[POU]
TTATGGCTCTGGGGAACTCCCCGGCCAA
4._JA_6_/2_[POU]
TTATGGCTCTGGGGAACTCCCCGGCCAA
5._JA_6_/2_[POU]
TTATGGCTCTGGGGAACTCCCCGGCCAA
6._JA_6_/2_[POU]
TTATGGCTCTGGGGAACTCCCCGGCCAA
7._JA_6_/2_[POU]
TTATGGCTCTGGGGAACTCCCCGGCCAA
8._JA_6_/2_[POU]
TTATGGCTCTGGGGAACTCCCCGGCCAA
9._JA_6_/2_[POU]
TTATGGCTCTGGGGAACTCCCCGGCCAA
10._JA_6_/2_[POU]
TTATGGCTCTGGGGAACTCCCCGGCCAA
11._GC-08-091-2-14
TTATGGCTCTGGGGAACTCCCCGGCCAA
12._GC-08-091-2-14
TTATGGCTCTGGGGAACTCCCCGGCCAA
13._JA_6_/2_[POU]
TTATGGCTCTGG__AACTCCCCGGCCAA
14._JA_6_/2_[POU]
TTATGGCTCTGGGGAACTCCCCGGCCAA
15._JA_6_/2_[POU]
TTATGGCTCTGGGGAGCTCCCCGGCCAA
 293031323334353637383940  
_Input profile
AGGGATCCAACGCCCTGTCCATCGX_XX_X
1._JA_6_/2_[POU]
AGAGATCCAACCACCTGTCCATCGX_XX_X
2._JA_6_/2_[POU]
AGAGATCCAACCACCTGTCCATCGX_XX_X
3._JA_6_/2_[POU]
AGAGATCCAACCACCTGTCCATCGX_XX_X
4._JA_6_/2_[POU]
AGAGATCCAACCACCTGTCCATCGX_XX_X
5._JA_6_/2_[POU]
AGAGATCCAACCACCTGTCCATCGX_XX_X
6._JA_6_/2_[POU]
AGAGATCCAACCACCTGTCCATCGX_XX_X
7._JA_6_/2_[POU]
AGAGATCCAACCACCTGTCCATCGX_XX_X
8._JA_6_/2_[POU]
AGAGATCCAACCACCTGTCCATCGX_XX_X
9._JA_6_/2_[POU]
AGAGATCCAACCACCTGTCCATCGX_XX_X
10._JA_6_/2_[POU]
AGAGATCCAACCACCTGTCCATCGX_XX_X
11._GC-08-091-2-14
AGAGATCCAACCACCTGTCCATCGX_XX_X
12._GC-08-091-2-14
AGAGATCCAACCACCTGTCCATCGX_XX_X
13._JA_6_/2_[POU]
AGAGATCCAACCACCTGTCCATCGX_XX_X
14._JA_6_/2_[POU]
AGAGATCCAACCAC__GTCCATCGX_XX_X
15._JA_6_/2_[POU]
AGAGATCCAACCACCTGTCCATCGX_XX_X

Input profile: JA_6_/2_[POU]

 
Mars Center for Cocoa Science, Brazil
Location: 8214 12
 Dapeng Zhang, 2016

1._JA_6_/2_[POU]

80.8 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8214 3 > FP
 Dapeng Zhang, 2016

2._JA_6_/2_[POU]

80.8 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8214 2 > FP
 Dapeng Zhang, 2016

3._JA_6_/2_[POU]

80.8 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8214 1 > FP
 Dapeng Zhang, 2016

4._JA_6_/2_[POU]

80.8 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8214 13
 Dapeng Zhang, 2016

5._JA_6_/2_[POU]

80.8 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8214 11
 Dapeng Zhang, 2016

6._JA_6_/2_[POU]

80.8 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8214 9
 Dapeng Zhang, 2016

7._JA_6_/2_[POU]

80.8 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8214 7
 Dapeng Zhang, 2016

8._JA_6_/2_[POU]

80.8 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8214 5
 Dapeng Zhang, 2016

9._JA_6_/2_[POU]

80.8 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8214 4
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

10._JA_6_/2_[POU]

80.8 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8214 4
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

11._JA_6_/2_[POU] GC-08-091-2-14

80.8 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

12._JA_6_/2_[POU] GC-08-091-2-14

80.8 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

13._JA_6_/2_[POU]

80.3 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8214 15
 Dapeng Zhang, 2016

14._JA_6_/2_[POU]

80.3 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8214 10
 Dapeng Zhang, 2016

15._JA_6_/2_[POU]

78.8 %
40 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper C 364
 Dapeng Zhang, 2016

 


  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP998 15TcSNP994
16TcSNP953 17TcSNP929 18TcSNP917 19TcSNP891 20TcSNP872
21TcSNP723 22TcSNP645 23TcSNP619 24TcSNP591 25TcSNP577
26TcSNP560 27TcSNP534 28TcSNP529 29TcSNP469 30TcSNP429
31TcSNP372 32TcSNP242 33TcSNP230 34TcSNP226 35TcSNP193
36TcSNP151 37TcSNP150 38TcSNP144 39TcSNP32 40TcSNP25