SNP Profiles of IMC 41   View Data

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 Key

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_Input profile
CCGGCGCCTTCCTTCCCCAAGGCCAGCT
1._IMC_41
CCGGCGCCTTCCTTCCCCAAGGCCAGCT
2._IMC_41
CCGGCGCCTTCCTTCCCCAAGGCCAGCT
3._IMC_41
CCGGCGCCTTCCTTCCCCAAGGCCAGCT
4._GC-08-275-8-47
CCGGCGCCTTCCTTCCCCAAGGCCAGCT
5._GC-08-275-8-47
CCGGCGCCTTCCTTCCCCAAGGCCAGCT
6._GC-08-275-8-47
CCGGCGCCTTCCTTCCCCAAGGCCAGCT
7._IMC_41
CCGGCGCCTTCCTTCCCCAAGGCCAGCT
8._IMC_41
CCGGCGCCTTCCTTCCCCAAGGCCAGCT
9._GC-08-275-8-47
CCGGCGCCTTCCTTCCCCAAGGCCAGCT
10._GC-08-275-8-47
CCGGCGCCTTCCTTCCCCAAGGCCAGCT
 1516171819202122232425262728
_Input profile
AAGGCTCCGGGGAATTGGGTCCAAAAGG
1._IMC_41
AAGGCTCCGGGGAATTGGGTCCAAAAGG
2._IMC_41
AAGGCTCCGGGGAATTGGGTCCAAAAGG
3._IMC_41
AAGGCTCCGGGGAATTGGGTCCAAAAGG
4._GC-08-275-8-47
AAGGCTCCGGGGAATTGGGTCCAAAAGG
5._GC-08-275-8-47
AAGGCTCCGGGGAATTGGGTCCAAAAGG
6._GC-08-275-8-47
AAGGCTCCGGGGAATTGGGTCCAAAAGG
7._IMC_41
AAGGCTCCGGGGAATTGGGTCCAAAAGG
8._IMC_41
AAGGCTCCGGGGAATTGGGTCCAAAAGG
9._GC-08-275-8-47
AAGGCTCCGGGGAATTGGGTCCAAAAGG
10._GC-08-275-8-47
AAGGCTCCGGGGAATTGGGTCCAAAAGG
 293031323334353637     
_Input profile
AACCAAACCCGTACAAGGX_XX_XX_XX_XX_X
1._IMC_41
AACCAA_CCGTACAAGGX_XX_XX_XX_XX_X
2._IMC_41
AACCAA_CCGTACAAGGX_XX_XX_XX_XX_X
3._IMC_41
AACCAA_CCGTACAAGGX_XX_XX_XX_XX_X
4._GC-08-275-8-47
AACCAA_CCGTACAAGGX_XX_XX_XX_XX_X
5._GC-08-275-8-47
AACCAA_CCGTACAAGGX_XX_XX_XX_XX_X
6._GC-08-275-8-47
AACCAA_CCGTACAAGGX_XX_XX_XX_XX_X
7._IMC_41
AACCAAAACCGTACAAGGX_XX_XX_XX_XX_X
8._IMC_41
AACCAAAACCGTACAAGGX_XX_XX_XX_XX_X
9._GC-08-275-8-47
AACCAAAACCGTACAAGGX_XX_XX_XX_XX_X
10._GC-08-275-8-47
AACCAAAACCGTACAAGGX_XX_XX_XX_XX_X

Input profile: IMC_41

 
International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B F418 T1
 Dapeng Zhang, 2016

1._IMC_41

identical
36 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8847 3
 Dapeng Zhang, 2016

2._IMC_41

identical
36 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8847 2
 Dapeng Zhang, 2016

3._IMC_41

identical
36 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8847 1
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

4._IMC_41 GC-08-275-8-47

identical
36 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

5._IMC_41 GC-08-275-8-47

identical
36 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

6._IMC_41 GC-08-275-8-47

identical
36 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

7._IMC_41

98.6 %
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8847 5
 Dapeng Zhang, 2016

8._IMC_41

98.6 %
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8847 4
 Dapeng Zhang, 2016

9._IMC_41 GC-08-275-8-47

98.6 %
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

10._IMC_41 GC-08-275-8-47

98.6 %
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1270 7TcSNP1253 8TcSNP1165 9TcSNP1144 10TcSNP1075
11TcSNP1062 12TcSNP1060 13TcSNP998 14TcSNP994 15TcSNP953
16TcSNP929 17TcSNP917 18TcSNP891 19TcSNP872 20TcSNP723
21TcSNP645 22TcSNP619 23TcSNP577 24TcSNP560 25TcSNP534
26TcSNP529 27TcSNP469 28TcSNP429 29TcSNP372 30TcSNP242
31TcSNP230 32TcSNP193 33TcSNP151 34TcSNP150 35TcSNP144
36TcSNP32 37TcSNP25