SNP Profiles of NA 33   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
CCAGCGTTTTCCTTCCCCAAGGCTAATT
1._IMC_14___
CCAGCGTTTTCCTTCCCCAAGGCTAATT
2._IMC_14___
CCAGCGTTTTCCTTCCCCAAGGCTAATT
3._IMC_14___
CCAGCGTTTTCCTTCCCCAAGGCTAATT
4._IMC_14___
CCAGCGTTTTCCTTCCCCAAGGCTAATT
5._IMC_14___
CCAGCGTTTTCCTTCCCCAAGGCTAATT
6._IMC_14___
CCAGCGTTTTCCTTCCCCAAGGCTAATT
7._IMC_14___
CCAGCGTTTTCCTTCCCCAAGGCTAATT
8._IMC_14___
CCAGCGTTTTCCTTCCCCAAGGCTAATT
9._IMC_14___
CCAGCGTTTTCCTTCCCCAAGGCTAATT
10._IMC_14___
CCAGCGTTTTCCTTCCCCAAGGCTAATT
11._IMC_14___
CCAGCGTTTTCCTTCCCCAAGGCTAATT
12._IMC_14___
CCAGCGTTTTCCTTCCCCAAGGCTAATT
13._IMC_14___
CCAGCGTTTTCCTTCCCCAAGGCTAATT
14._IMC_14___
CCAGCGTTTTCCTTCCCCAAGGCTAATT
15._IMC_14___
CCAGCGTTTTCCTTCCCCAAGGCTAATT
16._IMC_14___
CCAGCGTTTTCCTTCCCCAAGGCTAATT
17._IMC_14___
CCAGCGTTTTCCTTCCCCAAGGCTAATT
18._IMC_14___
CCAGCGTTTTCCTTCCCCAAGGCTAATT
19._IMC_14___
CCAGCGTTTTCCTTCCCCAAGGCTAATT
20._IMC_14___
CCAGCGTTTT__TTCCCCAAGGCTAATT
21._IMC_14___
CCAGCGTTTT__TTCCCCAAGGCTAATT
22._IMC_14___
CCAGCGTTTT__TTCCCCAAGGCTAATT
23._IMC_14___
CCAGCGTTTT__TTCCCCAAGGCTAATT
24._IMC_14___
CCAGCGTTTT__TTCCCCAAGGCTAA__
25._IMC_14___
CCAGCGTTTT__TTCCCCAAGGCTAA__
26._IMC_14___
____CG__________CC__GG__AA__
27._IMC_14___
CCAGCGTTTTCCTTCC__AAGGCTAATT
28._IMC_14___
__AGCGTT______________CTAA__
29._IMC_14___
CTAG__CTTTAACCCTCTAAAACTAGCT
30._IMC_14___
GGAGCGAAAACCAA____AAGGAGAAAA
31._IMC_14___
GGAGCGAAAACCAA____AAGGAGAAAA
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AAGGCCCCCCGGAACCAAGGGGCTCCAA
1._IMC_14___
AAGGCCCCCCGGAACCAAGGGGCTCCAA
2._IMC_14___
AAGGCCCCCCGGAACCAAGGGGCTCCAA
3._IMC_14___
AAGGCCCCCCGGAACCAAGGGGCTCCAA
4._IMC_14___
AAGGCCCCCCGGAACCAAGGGGCTCCAA
5._IMC_14___
AAGGCCCCCCGGAACCAAGGGGCTCCAA
6._IMC_14___
AAGGCCCCCCGGAACCAAGGGGCTCCAA
7._IMC_14___
AAGGCCCCCCGGAACCAAGGGGCTCCAA
8._IMC_14___
AAGGCCCCCCGGAACCAAGGGGCTCCAA
9._IMC_14___
AAGGCCCCCCGGAACCAAGGGGCTCCAA
10._IMC_14___
AAGGCCCCCCGGAACCAAGGGGCTCCAA
11._IMC_14___
AAGGCCCCCCGGAACCAAGGGGCTCCAA
12._IMC_14___
AAGGCCCCCCGGAACCAAGGGGCTCCAA
13._IMC_14___
AAGGCCCCCCGGAACCAAGGGGCTCCAA
14._IMC_14___
AAGGCCCCCCGG__CCAAGGGGCTCCAA
15._IMC_14___
AAGGCCCCCCGG__CCAAGGGGCTCCAA
16._IMC_14___
AAGGCCCCCCGG__CCAAGGGGCTCCAA
17._IMC_14___
AAGGCCCCCCGG__CCAAGGGGCTCCAA
18._IMC_14___
AAGGCCCCCCGG__CCAAGGGGCTCCAA
19._IMC_14___
AAGGCCCCCCGG__CCAAGGGGCTCCAA
20._IMC_14___
AAGGCCCCCCGG__CCAAGGGGCTCCAA
21._IMC_14___
AAGGCCCCCCGG__CCAAGGGGCTCCAA
22._IMC_14___
AAGGCCCCCCGG__CCAAGGGGCTCCAA
23._IMC_14___
AAGGCCCCCCGG__CCAAGGGGCTCCAA
24._IMC_14___
AAGGCCCCCCGG__CCAAGGGGCTCCAA
25._IMC_14___
AAGGCCCCCCGG__CCAAGGGGCTCCAA
26._IMC_14___
________CCGGAA__AAGG____CC__
27._IMC_14___
AAGGCCCCCCGGAACCAAGGGGCTCCAA
28._IMC_14___
______CCCCGG__CCAAGGGGCTCCAA
29._IMC_14___
AAGGTTCCGGGGAGCTCCCCTTCTCCAG
30._IMC_14___
AAGGGGGGGGCC__GGAAGGCC__CC__
31._IMC_14___
AAGGGGGGGGCC__GGAAGGCC__CC__
 29 30 31 32 33 34 35 36 37 38 39    
_Input profile
GGAATTAGCGAACTGTACTTGGX_XX_XX_X
1._IMC_14___
GGAATTAGCGAACTGTACTTGGX_XX_XX_X
2._IMC_14___
GGAATTAGCGAACTGTACTTGGX_XX_XX_X
3._IMC_14___
GGAATTAGCGAACTGTACTTGGX_XX_XX_X
4._IMC_14___
GGAATTAGCGAACTGTACTTGGX_XX_XX_X
5._IMC_14___
GGAATTAGCGAACTGTACTTGGX_XX_XX_X
6._IMC_14___
GGAATTAGCGAACTGTACTTGGX_XX_XX_X
7._IMC_14___
GGAATTAGCGAACTGTACTTGGX_XX_XX_X
8._IMC_14___
GGAATTAGCGAACTGTACTTGGX_XX_XX_X
9._IMC_14___
GGAATTAGCGAACTGTACTTGGX_XX_XX_X
10._IMC_14___
GGAATTAGCGAACTGTACTTGGX_XX_XX_X
11._IMC_14___
GGAATTAGCGAACTGTACTTGGX_XX_XX_X
12._IMC_14___
GGAATTAGCGAACTGTACTTGGX_XX_XX_X
13._IMC_14___
GGAATTAGCGAACTGTACTTGGX_XX_XX_X
14._IMC_14___
GGAATTAGCGAACTGTACTTGGX_XX_XX_X
15._IMC_14___
GGAATTAGCGAACTGTACTTGGX_XX_XX_X
16._IMC_14___
GGAATTAGCGAACTGTACTTGGX_XX_XX_X
17._IMC_14___
GGAATTAGCGAACTGTACTTGGX_XX_XX_X
18._IMC_14___
GGAATTAGCGAACTGTACTTGGX_XX_XX_X
19._IMC_14___
GGAATTAGCGAACTGTACTTGGX_XX_XX_X
20._IMC_14___
GGAATTAGCGAACTGTACTTGGX_XX_XX_X
21._IMC_14___
GGAATTAGCGAACTGTACTTGGX_XX_XX_X
22._IMC_14___
GGAATTAGCGAACTGTACTTGGX_XX_XX_X
23._IMC_14___
GGAATTAGCGAACTGTACTTGGX_XX_XX_X
24._IMC_14___
GGAATTAGCGAACTGTACTTGGX_XX_XX_X
25._IMC_14___
GGAATTAGCGAACTGTACTTGGX_XX_XX_X
26._IMC_14___
______AG________AC____X_XX_XX_X
27._IMC_14___
GGAATTAG__ACCTGTACTTGGX_XX_XX_X
28._IMC_14___
__AATTAGCGACCTGTAC____X_XX_XX_X
29._IMC_14___
GGAACTAACCACCTGTCCTTGGX_XX_XX_X
30._IMC_14___
GGAAAAAGCGACAGACACTTGGX_XX_XX_X
31._IMC_14___
GGAAAAAGCGACAGACACTTGGX_XX_XX_X

Input profile: IMC_14

 
Mars Center for Cocoa Science, Brazil
Location: 3309 13
 Dapeng Zhang, 2016

1._IMC_14 GC-03-030-3-09

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

2._IMC_14 GC-03-030-3-09

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

3._IMC_14 GC-03-030-3-09

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

4._IMC_14 GC-03-030-3-09

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

5._IMC_14

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3309 1
 Dapeng Zhang, 2016

6._IMC_14

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3309 5
 Dapeng Zhang, 2016

7._IMC_14

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3309 9
 Dapeng Zhang, 2016

8._IMC_14

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3309 11
 Dapeng Zhang, 2016

9._IMC_14

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3309 16
 Dapeng Zhang, 2016

10._IMC_14

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4318 4 > FP
 Dapeng Zhang, 2016

11._IMC_14 GC-03-030-3-09

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

12._IMC_14 GC-03-030-3-09

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

13._IMC_14 GC-04-054-3-18

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP2
 Mars, 2018

14._IMC_14 GC-03-030-3-09

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

15._IMC_14 GC-03-030-3-09

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

16._IMC_14

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3309 2
 Dapeng Zhang, 2016

17._IMC_14

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3309 3
 Dapeng Zhang, 2016

18._IMC_14

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3309 12
 Dapeng Zhang, 2016

19._IMC_14 GC-03-030-3-09

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

20._IMC_14

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3309 4
 Dapeng Zhang, 2016

21._IMC_14 GC-03-030-3-09

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

22._IMC_14 GC-03-030-3-09

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

23._IMC_14

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3309 6
 Dapeng Zhang, 2016

24._IMC_14 GC-03-030-3-09

identical
36 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

25._IMC_14

identical
36 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3309 10
 Dapeng Zhang, 2016

26._IMC_14 RUQ_1634

identical
12 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

27._IMC_14

98.6 %
37 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D600
 Dapeng Zhang, 2016

28._IMC_14 RUQ_1634

97.8 %
23 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

29._IMC_14 RUQ_1634

60.5 %
38 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

30._IMC_14 GC-03-30-3-9

54.4 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 3, Block: 3, Rep: 9, Tree: 1
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

31._IMC_14 RUQ_1634

54.4 %
34 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1165 9TcSNP1144 10TcSNP1075
11TcSNP1062 12TcSNP1060 13TcSNP998 14TcSNP994 15TcSNP953
16TcSNP929 17TcSNP917 18TcSNP891 19TcSNP872 20TcSNP723
21TcSNP645 22TcSNP619 23TcSNP591 24TcSNP577 25TcSNP560
26TcSNP534 27TcSNP529 28TcSNP469 29TcSNP429 30TcSNP372
31TcSNP242 32TcSNP230 33TcSNP226 34TcSNP193 35TcSNP151
36TcSNP150 37TcSNP144 38TcSNP32 39TcSNP25