SNP Profiles of NA 33   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
CCAGCGTTTTCCTTGTCCCCAAGGCTAA
1._IMC_11___
CCAGCGTTTTCCTTGTCCCCAAGGCTAA
2._IMC_11___
CCAGCGTTTTCCTTGTCCCCAAGGCTAA
3._IMC_11___
CCAGCGTTTTCCTTGTCCCCAAGGCTAA
4._IMC_11___
CCAGCGTTTTCCTTGTCCCCAAGGCTAA
5._IMC_11___
CCAGCGTTTTCCTTGTCCCCAAGGCTAA
6._IMC_11___
CCAGCGTTTTCCTTGTCCCCAAGGCTAA
7._IMC_11___
CCAGCGTTTTCCTTGTCCCCAAGGCTAA
8._IMC_11___
CCAGCGTTTTCCTTGTCCCCAAGGCTAA
9._IMC_11___
CCAGCGTTTTCCTTGTCCCCAAGGCTAA
10._IMC_11___
____CG________GT__CC__GG__AA
11._IMC_11___
CCAGCGTTTTCCTTGTCCCCAAGGCTAA
12._IMC_11___
__AGCGTT______GT________CTAA
13._IMC_11___
CCAGCGTTTTCCTTGTCCCCAAGGCTAA
14._IMC_11___
GGAGCGAAAACCAAAA____AAGGAGAA
15._IMC_11___
GGAGCGAAAACCAAAA____AAGGAGAA
16._IMC_11___
GGAGCGAAAACCAAAA____AAGGAGAA
17._IMC_11___
GGAGCGAAAACCAAAA____AAGGAGAA
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
TTAAGGCCCCCCGGAACCAAGGGGCTCC
1._IMC_11___
TTAAGGCCCCCCGGAACCAAGGGGCTCC
2._IMC_11___
TTAAGGCCCCCCGGAACCAAGGGGCTCC
3._IMC_11___
TTAAGGCCCCCCGGAACCAAGGGGCTCC
4._IMC_11___
TTAAGGCCCCCCGGAACCAAGGGGCTCC
5._IMC_11___
TTAAGGCCCCCCGGAACCAAGGGGCTCC
6._IMC_11___
TTAAGGCCCCCCGGAACCAAGGGGCTCC
7._IMC_11___
TTAAGGCCCCCCGGAACCAAGGGGCTCC
8._IMC_11___
TTAAGGCCCCCCGGAACCAAGGGGCT__
9._IMC_11___
TTAAGGCCCCCCGGAACCAAGGGGCT__
10._IMC_11___
__________CCGGAA__AAGG______
11._IMC_11___
TTAAGGCCCCCCGGAACCAAGGGGCTCC
12._IMC_11___
________CCCCGG__CCAAGGGGCTCC
13._IMC_11___
TTAAGGCCCCCCGGAACCAAGGGGCTCC
14._IMC_11___
AAAAGGGGGGGGCC__GGAAGGCC__CC
15._IMC_11___
AAAAGGGGGGGGCC__GGAAGGCC__CC
16._IMC_11___
AAAAGGGGGGGGCC__GGAAGGCC__CC
17._IMC_11___
AAAAGGGGGGGGCC__GGAAGGCC__CC
 29 30 31 32 33 34 35 36 37 38 39 40   
_Input profile
AAGGAATTAGCGAACTGTACTTGGX_XX_X
1._IMC_11___
AAGGAATTAGCGAACTGTACTTGGX_XX_X
2._IMC_11___
AAGGAATTAGCGAACTGTACTTGGX_XX_X
3._IMC_11___
AAGGAATTAGCGAACTGTACTTGGX_XX_X
4._IMC_11___
AAGGAATTAGCGAACTGTACTTGGX_XX_X
5._IMC_11___
AAGGAATTAGCGAACTGTACTTGGX_XX_X
6._IMC_11___
AAGGAATTAGCGAACTGTACTTGGX_XX_X
7._IMC_11___
AAGGAATTAGCGAACTGTACTTGGX_XX_X
8._IMC_11___
AAGGAATTAGCGAACTGTACTTGGX_XX_X
9._IMC_11___
AAGGAATTAGCGAACTGTACTTGGX_XX_X
10._IMC_11___
________AG________AC____X_XX_X
11._IMC_11___
AAGGAATTAGCGACCTGTACTTGGX_XX_X
12._IMC_11___
AA__AATTAGCGACCTGTAC____X_XX_X
13._IMC_11___
AAAGAATTAGCGACCTGTACTTGGX_XX_X
14._IMC_11___
__GGAAAAAGCGACAGACACTTGGX_XX_X
15._IMC_11___
__GGAAAAAGCGACAGACACTTGGX_XX_X
16._IMC_11___
__GGAAAAAGCGACAGACACTTGGX_XX_X
17._IMC_11___
__GGAAAAAGCGACAGACACTTGGX_XX_X

Input profile: IMC_11

 
Mars Center for Cocoa Science, Brazil
Location: 4211 8
 Dapeng Zhang, 2016

1._IMC_11 GC-04-029-2-11

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

2._IMC_11 GC-04-029-2-11

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6 > FP3
 Mars, 2018

3._IMC_11 GC-04-029-2-11

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

4._IMC_11

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4211 6 > FP
 Dapeng Zhang, 2016

5._IMC_11

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4211 1 > FP
 Dapeng Zhang, 2016

6._IMC_11

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4211 5
 Dapeng Zhang, 2016

7._IMC_11 GC-04-029-2-11

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

8._IMC_11

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4211 2 > FP
 Dapeng Zhang, 2016

9._IMC_11 GC-04-029-2-11

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP4
 Mars, 2018

10._IMC_11 RUQ_8

identical
12 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

11._IMC_11

98.8 %
40 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B F423 T1
 Dapeng Zhang, 2016

12._IMC_11 RUQ_8

97.9 %
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

13._IMC_11 RUQ_8

97.5 %
40 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

14._IMC_11 GC-04-29-2-11

52.9 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 4, Block: 2, Rep: 11, Tree: 5
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

15._IMC_11 RUQ_8

52.9 %
35 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

16._IMC_11 MITC-000647

52.9 %
35 shared markers

USDA-SHRS, United States of America
 Mars, 2018

17._IMC_11 IMC_11_Fld#_165_Plt#_2

52.9 %
35 shared markers

USDA-TARS, United States of America
Location: Field: 165, Tree: 2
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP998 15TcSNP994
16TcSNP953 17TcSNP929 18TcSNP917 19TcSNP891 20TcSNP872
21TcSNP723 22TcSNP645 23TcSNP619 24TcSNP591 25TcSNP577
26TcSNP560 27TcSNP534 28TcSNP529 29TcSNP469 30TcSNP429
31TcSNP372 32TcSNP242 33TcSNP230 34TcSNP226 35TcSNP193
36TcSNP151 37TcSNP150 38TcSNP144 39TcSNP32 40TcSNP25