SNP Profiles of ICS 43   View Data

 Show/Hide Profiles

 Key

 1234567891011121314
_Input profile
CTAGGGCTTTAACCGTCTCTAACTAACT
1._ICS_43
CTAGGGCTTTAACCGTCTCTAACTAACT
2._RUQ_144
__AGGGCT______GT______CTAA__
3._RUQ_144
____GG________GT__CT____AA__
4._ICS43
____CC________________CT__CT
5._ICS_43
CCGGCCCCTT__TTTTCCCCAACCGGCC
6._GC-01-051-3-06
CCGGCCCCTT__TTTTCCCCAACCGGCC
7._GC-01-051-3-06
CCGGCCCCTT__TTTTCCCCAACCGGCC
8._GC-01-051-3-06
CCGGCCCCTT__TTTTCCCCAACCGGCC
9._GC-01-051-3-06
CCGGCCCCTT__TTTTCCCCAACCGGCC
10._GC-01-051-3-06
CCGGCCCCTT__TTTTCCCCAACCGGCC
11._GC-01-051-3-06
CCGGCCCCTT__TTTTCCCCAACCGGCC
12._GC-01-051-3-06
CCGGCCCCTT__TTTTCCCCAACCGGCC
13._GC-01-051-3-06
CCGGCCCCTT__TTTTCCCCAACCGGCC
14._GC-01-051-3-06
CCGGCCCCTT__TTTTCCCCAACCGGCC
15._ICS_43
CCGGCCCCTT__TTTTCCCCAACCGGCC
16._ICS_43
CCGGCCCCTT__TTTTCCCCAACCGGCC
17._ICS_43
CCGGCCCCTT__TTTTCCCCAACCGGCC
18._ICS_43
CCGGCCCCTT__TTTTCCCCAACCGGCC
19._ICS_43
CCGGCCCCTT__TTTTCCCCAACCGGCC
20._ICS_43
CCGGCCCCTT__TTTTCCCCAACCGGCC
21._ICS_43
CCGGCCCCTT__TTTTCCCCAACCGGCC
22._ICS_43
CCGGCCCCTT__TTTTCCCCAACCGGCC
23._GC-01-051-3-06
CCGGCCCCTT__TTTTCCCCAACCGGCC
24._ICS_43
CCGGCCCCTT__TTTTCCCCAACCGGCC
25._RUQ_144
AGAGCCAGAAAAGGAA____AAAGAAAG
26._ICS_43_Fld#_164_Plt#_1
AGAGCCAGAAAAGGAA____AAAGAAAG
 1516171819202122232425262728
_Input profile
AAGGTTCCGGGTAGTTAACCTTTTCCAG
1._ICS_43
AAGGTTCCGGGTAGTTAACCTTTTCCAG
2._RUQ_144
______CCGGGT__TTAACCTTTTCCAG
3._RUQ_144
________GGGTAG__AACC____CC__
4._ICS43
______CCCC______AACC________
5._ICS_43
AAGGCCCCGGGGAACCCCCCGGCCAAGG
6._GC-01-051-3-06
AAGGCCCCGGGGAACCCCCCGGCCAAGG
7._GC-01-051-3-06
AAGGCCCCGGGGAACCCCCCGGCCAAGG
8._GC-01-051-3-06
AAGGCCCCGGGGAACCCCCCGGCCAAGG
9._GC-01-051-3-06
AAGGCCCCGGGGAACCCCCCGGCCAAGG
10._GC-01-051-3-06
AAGGCCCCGGGGAACCCCCCGGCCAAGG
11._GC-01-051-3-06
AAGGCCCCGGGGAACCCCCCGGCCAAGG
12._GC-01-051-3-06
AAGGCCCCGGGGAACCCCCCGGCCAAGG
13._GC-01-051-3-06
AAGGCCCCGGGGAACCCCCCGGCCAAGG
14._GC-01-051-3-06
AAGGCCCCGGGGAACCCCCCGGCCAAGG
15._ICS_43
AAGGCCCCGGGGAACCCCCCGGCCAAGG
16._ICS_43
AAGGCCCCGGGGAACCCCCCGGCCAAGG
17._ICS_43
AAGGCCCCGGGGAACCCCCCGGCCAAGG
18._ICS_43
AAGGCCCCGGGGAACCCCCCGGCCAAGG
19._ICS_43
AAGGCCCCGGGGAACCCCCCGGCCAAGG
20._ICS_43
AAGGCCCCGGGGAACCCCCCGGCCAAGG
21._ICS_43
AAGGCCCCGGGGAACCCCCCGGCCAAGG
22._ICS_43
AAGGCCCCGGGGAACCCCCCGGCCAAGG
23._GC-01-051-3-06
AAGGCCCCGGGGAACCCCCCGGCCAA__
24._ICS_43
AAGGCCCCGGGGAACCCCCCGGCCAA__
25._RUQ_144
AAGGAAGGCCAC__AAAACCAA__CC__
26._ICS_43_Fld#_164_Plt#_1
AAGGAAGGCCAC__AAAACCAA__CC__
 2930313233343536373839   
_Input profile
AGAACTGGCGACCTGTACTTGGX_XX_XX_X
1._ICS_43
AGAACTGG__ACCTGTACTTGGX_XX_XX_X
2._RUQ_144
__AACTGGCGACCTGTAC____X_XX_XX_X
3._RUQ_144
______GG________AC____X_XX_XX_X
4._ICS43
__AA__GGCGACCT__AC____X_XX_XX_X
5._ICS_43
GGAACCGGCCAATTTTAAAAGGX_XX_XX_X
6._GC-01-051-3-06
GGAACCGGCCAATTTTAAAAGGX_XX_XX_X
7._GC-01-051-3-06
GGAACCGGCCAATTTTAAAAGGX_XX_XX_X
8._GC-01-051-3-06
GGAACCGGCCAATTTTAAAAGGX_XX_XX_X
9._GC-01-051-3-06
GGAACCGGCCAATTTTAAAAGGX_XX_XX_X
10._GC-01-051-3-06
GGAACCGGCCAATTTTAAAAGGX_XX_XX_X
11._GC-01-051-3-06
GGAACCGGCCAATTTTAAAAGGX_XX_XX_X
12._GC-01-051-3-06
GGAACCGGCCAATTTTAAAAGGX_XX_XX_X
13._GC-01-051-3-06
GGAACCGGCCAATTTTAAAAGGX_XX_XX_X
14._GC-01-051-3-06
GGAACCGGCCAATTTTAAAAGGX_XX_XX_X
15._ICS_43
GGAACCGGCCAATTTTAAAAGGX_XX_XX_X
16._ICS_43
GGAACCGGCCAATTTTAAAAGGX_XX_XX_X
17._ICS_43
GGAACCGGCCAATTTTAAAAGGX_XX_XX_X
18._ICS_43
GGAACCGGCCAATTTTAAAAGGX_XX_XX_X
19._ICS_43
GGAACCGGCCAATTTTAAAAGGX_XX_XX_X
20._ICS_43
GGAACCGGCCAATTTTAAAAGGX_XX_XX_X
21._ICS_43
GGAACCGGCCAATTTTAAAAGGX_XX_XX_X
22._ICS_43
GGAACCGGCCAATTTTAAAAGGX_XX_XX_X
23._GC-01-051-3-06
GGAACC__CCAATTTTAAAAGGX_XX_XX_X
24._ICS_43
GGAACC__CCAATTTTAAAAGGX_XX_XX_X
25._RUQ_144
GGAAAGGGCGACAGACACTTGGX_XX_XX_X
26._ICS_43_Fld#_164_Plt#_1
GGAAAGGGCGACAGACACTTGGX_XX_XX_X

Input profile: ICS_43 RUQ_144

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

1._ICS_43

identical
38 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: San Juan Block3
 Dapeng Zhang, 2016

2._ICS_43 RUQ_144

identical
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

3._ICS_43 RUQ_144

identical
12 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

4._ICS_43 ICS43

84.6 %
13 shared markers

Center for Forestry Research and Technology Transfer, Vietnam
Location: CEFORTT
 Jocelyn De Wever et al., 2019

5._ICS_43

50 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1306 2
 Dapeng Zhang, 2016

6._ICS_43 GC-01-051-3-06

50 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14
 Mars, 2018

7._ICS_43 GC-01-051-3-06

50 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

8._ICS_43 GC-01-051-3-06

50 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9 > FP1
 Mars, 2018

9._ICS_43 GC-01-051-3-06

50 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8 > FP3
 Mars, 2018

10._ICS_43 GC-01-051-3-06

50 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

11._ICS_43 GC-01-051-3-06

50 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

12._ICS_43 GC-01-051-3-06

50 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

13._ICS_43 GC-01-051-3-06

50 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15
 Mars, 2018

14._ICS_43 GC-01-051-3-06

50 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

15._ICS_43

50 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1306 1
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

16._ICS_43

50 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1306 2
 Dapeng Zhang, 2016

17._ICS_43

50 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1306 4
 Dapeng Zhang, 2016

18._ICS_43

50 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1306 12
 Dapeng Zhang, 2016

19._ICS_43

50 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1306 14
 Dapeng Zhang, 2016

20._ICS_43

50 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1306 15
 Dapeng Zhang, 2016

21._ICS_43

50 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1306 8 > FP
 Dapeng Zhang, 2016

22._ICS_43

50 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1306 9 > FP
 Dapeng Zhang, 2016

23._ICS_43 GC-01-051-3-06

48.6 %
36 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

24._ICS_43

48.6 %
36 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1306 3
 Dapeng Zhang, 2016

25._ICS_43 RUQ_144

48.5 %
34 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

26._ICS_43 ICS_43_Fld#_164_Plt#_1

48.5 %
34 shared markers

USDA-TARS, United States of America
Location: Field: 164, Tree: 1
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1060 13TcSNP998 14TcSNP994 15TcSNP953
16TcSNP929 17TcSNP917 18TcSNP891 19TcSNP872 20TcSNP723
21TcSNP645 22TcSNP619 23TcSNP591 24TcSNP577 25TcSNP560
26TcSNP534 27TcSNP529 28TcSNP469 29TcSNP429 30TcSNP372
31TcSNP242 32TcSNP230 33TcSNP226 34TcSNP193 35TcSNP151
36TcSNP150 37TcSNP144 38TcSNP32 39TcSNP25