SNP Profiles of ICS 43   View Data

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 Key

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_Input profile
CTAGGGCTTTAACCGTCTCTAAAACTAA
1._RUQ_144
CTAGGGCTTTAACCGTCTCTAA__CTAA
2._RUQ_144
__AGGGCT______GT________CTAA
3._RUQ_144
____GG________GT__CT__AA__AA
4._ICS43
____CC__________________CT__
5._ICS_43
CCGGCCCCTT__TTTTCCCCAAGGCCGG
6._GC-01-051-3-06
CCGGCCCCTT__TTTTCCCCAAGGCCGG
7._GC-01-051-3-06
CCGGCCCCTT__TTTTCCCCAAGGCCGG
8._GC-01-051-3-06
CCGGCCCCTT__TTTTCCCCAAGGCCGG
9._GC-01-051-3-06
CCGGCCCCTT__TTTTCCCCAAGGCCGG
10._GC-01-051-3-06
CCGGCCCCTT__TTTTCCCCAAGGCCGG
11._GC-01-051-3-06
CCGGCCCCTT__TTTTCCCCAAGGCCGG
12._GC-01-051-3-06
CCGGCCCCTT__TTTTCCCCAAGGCCGG
13._GC-01-051-3-06
CCGGCCCCTT__TTTTCCCCAAGGCCGG
14._GC-01-051-3-06
CCGGCCCCTT__TTTTCCCCAAGGCCGG
15._ICS_43
CCGGCCCCTT__TTTTCCCCAAGGCCGG
16._ICS_43
CCGGCCCCTT__TTTTCCCCAAGGCCGG
17._ICS_43
CCGGCCCCTT__TTTTCCCCAAGGCCGG
18._ICS_43
CCGGCCCCTT__TTTTCCCCAAGGCCGG
19._ICS_43
CCGGCCCCTT__TTTTCCCCAAGGCCGG
20._ICS_43
CCGGCCCCTT__TTTTCCCCAAGGCCGG
21._ICS_43
CCGGCCCCTT__TTTTCCCCAAGGCCGG
22._ICS_43
CCGGCCCCTT__TTTTCCCCAAGGCCGG
23._RUQ_144
AGAGCCAGAAAAGGAA____AAAAAGAA
24._ICS_43_Fld#_164_Plt#_1
AGAGCCAGAAAAGGAA____AAAAAGAA
25._GC-01-051-3-06
CCGGCCCCTT__TTTTCCCCAAGGCCGG
26._ICS_43
CCGGCCCCTT__TTTTCCCCAAGGCCGG
 1516171819202122232425262728
_Input profile
CTAAGGTTCCGGGTAGTTAACCTTTTCC
1._RUQ_144
CTAAGGTTCCGGGTAGTTAACCTTTTCC
2._RUQ_144
________CCGGGT__TTAACCTTTTCC
3._RUQ_144
__________GGGTAG__AACC____CC
4._ICS43
CT______CCCC______AACC______
5._ICS_43
CCAAGGCCCCGGGGAACCCCCCGGCCAA
6._GC-01-051-3-06
CCAAGGCCCCGGGGAACCCCCCGGCCAA
7._GC-01-051-3-06
CCAAGGCCCCGGGGAACCCCCCGGCCAA
8._GC-01-051-3-06
CCAAGGCCCCGGGGAACCCCCCGGCCAA
9._GC-01-051-3-06
CCAAGGCCCCGGGGAACCCCCCGGCCAA
10._GC-01-051-3-06
CCAAGGCCCCGGGGAACCCCCCGGCCAA
11._GC-01-051-3-06
CCAAGGCCCCGGGGAACCCCCCGGCCAA
12._GC-01-051-3-06
CCAAGGCCCCGGGGAACCCCCCGGCCAA
13._GC-01-051-3-06
CCAAGGCCCCGGGGAACCCCCCGGCCAA
14._GC-01-051-3-06
CCAAGGCCCCGGGGAACCCCCCGGCCAA
15._ICS_43
CCAAGGCCCCGGGGAACCCCCCGGCCAA
16._ICS_43
CCAAGGCCCCGGGGAACCCCCCGGCCAA
17._ICS_43
CCAAGGCCCCGGGGAACCCCCCGGCCAA
18._ICS_43
CCAAGGCCCCGGGGAACCCCCCGGCCAA
19._ICS_43
CCAAGGCCCCGGGGAACCCCCCGGCCAA
20._ICS_43
CCAAGGCCCCGGGGAACCCCCCGGCCAA
21._ICS_43
CCAAGGCCCCGGGGAACCCCCCGGCCAA
22._ICS_43
CCAAGGCCCCGGGGAACCCCCCGGCCAA
23._RUQ_144
AGAAGGAAGGCCAC__AAAACCAA__CC
24._ICS_43_Fld#_164_Plt#_1
AGAAGGAAGGCCAC__AAAACCAA__CC
25._GC-01-051-3-06
CCAAGGCCCCGGGGAACCCCCCGGCCAA
26._ICS_43
CCAAGGCCCCGGGGAACCCCCCGGCCAA
 2930313233343536373839   
_Input profile
AGAGAACTGGACCTGTACTTGGX_XX_XX_X
1._RUQ_144
AGAGAACTGGACCTGTACTTGGX_XX_XX_X
2._RUQ_144
AG__AACTGGACCTGTAC____X_XX_XX_X
3._RUQ_144
________GG______AC____X_XX_XX_X
4._ICS43
____AA__GGACCT__AC____X_XX_XX_X
5._ICS_43
GGGGAACCGGAATTTTAAAAGGX_XX_XX_X
6._GC-01-051-3-06
GGGGAACCGGAATTTTAAAAGGX_XX_XX_X
7._GC-01-051-3-06
GGGGAACCGGAATTTTAAAAGGX_XX_XX_X
8._GC-01-051-3-06
GGGGAACCGGAATTTTAAAAGGX_XX_XX_X
9._GC-01-051-3-06
GGGGAACCGGAATTTTAAAAGGX_XX_XX_X
10._GC-01-051-3-06
GGGGAACCGGAATTTTAAAAGGX_XX_XX_X
11._GC-01-051-3-06
GGGGAACCGGAATTTTAAAAGGX_XX_XX_X
12._GC-01-051-3-06
GGGGAACCGGAATTTTAAAAGGX_XX_XX_X
13._GC-01-051-3-06
GGGGAACCGGAATTTTAAAAGGX_XX_XX_X
14._GC-01-051-3-06
GGGGAACCGGAATTTTAAAAGGX_XX_XX_X
15._ICS_43
GGGGAACCGGAATTTTAAAAGGX_XX_XX_X
16._ICS_43
GGGGAACCGGAATTTTAAAAGGX_XX_XX_X
17._ICS_43
GGGGAACCGGAATTTTAAAAGGX_XX_XX_X
18._ICS_43
GGGGAACCGGAATTTTAAAAGGX_XX_XX_X
19._ICS_43
GGGGAACCGGAATTTTAAAAGGX_XX_XX_X
20._ICS_43
GGGGAACCGGAATTTTAAAAGGX_XX_XX_X
21._ICS_43
GGGGAACCGGAATTTTAAAAGGX_XX_XX_X
22._ICS_43
GGGGAACCGGAATTTTAAAAGGX_XX_XX_X
23._RUQ_144
__GGAAAGGGACAGACACTTGGX_XX_XX_X
24._ICS_43_Fld#_164_Plt#_1
__GGAAAGGGACAGACACTTGGX_XX_XX_X
25._GC-01-051-3-06
__GGAACC__AATTTTAAAAGGX_XX_XX_X
26._ICS_43
__GGAACC__AATTTTAAAAGGX_XX_XX_X

Input profile: ICS_43

 
International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: San Juan Block3
 Dapeng Zhang, 2016

1._ICS_43 RUQ_144

identical
38 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

2._ICS_43 RUQ_144

identical
23 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

3._ICS_43 RUQ_144

identical
13 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

4._ICS_43 ICS43

83.3 %
12 shared markers

Center for Forestry Research and Technology Transfer, Vietnam
Location: CEFORTT
 Jocelyn De Wever et al., 2019

5._ICS_43

48.7 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1306 2
 Dapeng Zhang, 2016

6._ICS_43 GC-01-051-3-06

48.7 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14
 Mars, 2018

7._ICS_43 GC-01-051-3-06

48.7 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

8._ICS_43 GC-01-051-3-06

48.7 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9 > FP1
 Mars, 2018

9._ICS_43 GC-01-051-3-06

48.7 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8 > FP3
 Mars, 2018

10._ICS_43 GC-01-051-3-06

48.7 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

11._ICS_43 GC-01-051-3-06

48.7 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

12._ICS_43 GC-01-051-3-06

48.7 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

13._ICS_43 GC-01-051-3-06

48.7 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15
 Mars, 2018

14._ICS_43 GC-01-051-3-06

48.7 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

15._ICS_43

48.7 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1306 1
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

16._ICS_43

48.7 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1306 2
 Dapeng Zhang, 2016

17._ICS_43

48.7 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1306 4
 Dapeng Zhang, 2016

18._ICS_43

48.7 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1306 12
 Dapeng Zhang, 2016

19._ICS_43

48.7 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1306 14
 Dapeng Zhang, 2016

20._ICS_43

48.7 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1306 15
 Dapeng Zhang, 2016

21._ICS_43

48.7 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1306 8 > FP
 Dapeng Zhang, 2016

22._ICS_43

48.7 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1306 9 > FP
 Dapeng Zhang, 2016

23._ICS_43 RUQ_144

48.5 %
34 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

24._ICS_43 ICS_43_Fld#_164_Plt#_1

48.5 %
34 shared markers

USDA-TARS, United States of America
Location: Field: 164, Tree: 1
 Mars, 2018

25._ICS_43 GC-01-051-3-06

47.2 %
36 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

26._ICS_43

47.2 %
36 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1306 3
 Dapeng Zhang, 2016

 


  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP998 15TcSNP994
16TcSNP953 17TcSNP929 18TcSNP917 19TcSNP891 20TcSNP872
21TcSNP723 22TcSNP645 23TcSNP619 24TcSNP591 25TcSNP577
26TcSNP560 27TcSNP534 28TcSNP529 29TcSNP469 30TcSNP429
31TcSNP372 32TcSNP242 33TcSNP230 34TcSNP193 35TcSNP151
36TcSNP150 37TcSNP144 38TcSNP32 39TcSNP25