SNP Profiles of ICS 39 View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	CT	AG	CG	CT	TT	AA	CC	GT	CT	CT	AA	AA	CT	AA
1._GC-01-085-5-02	CT	AG	CG	CT	TT	AA	CC	GT	CT	CT	AA	AA	CT	AA
2._ICS_39	CT	AG	CG	CT	TT	AA	CC	GT	CT	CT	AA	AA	CT	AA
3._ICS_39	CT	AG	CG	CT	TT	AA	CC	GT	CT	CT	AA	AA	CT	AA
4._ICS_39	CT	AG	CG	CT	TT	AA	CC	GT	CT	CT	AA	AA	CT	AA
5._ICS_39	CT	AG	CG	CT	TT	AA	CC	GT	CT	CT	AA	AA	CT	AA
6._ICS_39	CT	AG	CG	CT	TT	AA	CC	GT	CT	CT	AA	AA	CT	AA
7._ICS_39	CT	AG	CG	CT	TT	AA	CC	GT	CT	CT	AA	AA	CT	AA
8._GC-01-085-5-02	CT	AG	CG	CT	TT	AA	CC	GT	CT	CT	AA	AA	CT	AA
9._GC-01-085-5-02	CT	AG	CG	CT	TT	AA	CC	GT	CT	CT	AA	AA	CT	AA
10._GC-01-85-5-02	CT	AG	CG	CT	TT	AA	CC	GT	CT	CT	AA	AA	CT	AA
11._GC-01-85-5-02	CT	AG	CG	CT	TT	AA	CC	GT	CT	CT	AA	AA	CT	AA
12._GC-01-85-5-02	CT	AG	CG	CT	TT	AA	CC	GT	CT	CT	AA	AA	CT	AA
13._GC-01-85-5-02	CT	AG	CG	CT	TT	AA	CC	GT	CT	CT	AA	AA	CT	AA
14._ICS_39	CT	AG	GG	CT	TT	AA	CC	GT	CT	CT	AA	AA	CT	AA
15._ICS_39	CT	AG	GG	CT	TT	AA	CC	GT	CT	CT	AA	AA	CT	AA
16._RUQ_1089	CC	AG	CC	TT	TT	AC	TT	TT	CC	CC	AA	AG	CT	AG
17._RUQ_1089	__	__	CC	__	__	__	__	TT	__	CC	__	AG	__	AG
18._ICS_39_Fld#_30_Plt#_2	AG	AG	CC	AG	AA	AA	GG	AA	__	__	AA	AA	AG	AA
19._RUQ_1089	GG	AA	GG	AA	AA	__	AA	AA	__	__	AA	AG	AG	AG

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	CT	AA	GG	TT	CC	CG	GT	GG	CT	AC	CC	GT	CT	CC
1._GC-01-085-5-02	CT	AA	GG	TT	CC	CG	GT	GG	CT	AC	CC	GT	CT	CC
2._ICS_39	CT	AA	GG	TT	CC	CG	GT	GG	CT	AC	CC	GT	CT	CC
3._ICS_39	CT	AA	GG	TT	CC	CG	GT	GG	CT	AC	CC	GT	CT	CC
4._ICS_39	CT	AA	GG	TT	CC	CG	GT	GG	CT	AC	CC	GT	CT	CC
5._ICS_39	CT	AA	GG	TT	CC	CG	GT	GG	CT	AC	CC	GT	CT	CC
6._ICS_39	CT	AA	GG	TT	CC	CG	GT	GG	CT	AC	CC	GT	CT	CC
7._ICS_39	CT	AA	GG	TT	CC	CG	GT	GG	CT	AC	CC	GT	CT	CC
8._GC-01-085-5-02	CT	AA	GG	TT	CC	CG	GT	GG	CT	AC	CC	GT	CT	CC
9._GC-01-085-5-02	CT	AA	GG	TT	CC	CG	GT	GG	CT	AC	CC	GT	CT	CC
10._GC-01-85-5-02	CT	AA	GG	TT	CC	CG	GT	GG	CT	AC	CC	GT	CT	CC
11._GC-01-85-5-02	CT	AA	GG	TT	CC	CG	GT	GG	CT	AC	CC	GT	CT	CC
12._GC-01-85-5-02	CT	AA	GG	TT	CC	CG	GT	GG	CT	AC	CC	GT	CT	CC
13._GC-01-85-5-02	CT	AA	GG	TT	CC	CG	GT	GG	CT	AC	CC	GT	CT	CC
14._ICS_39	CT	AA	GG	TT	CC	CG	GT	AG	CT	AC	CC	GT	CT	CC
15._ICS_39	CT	AA	GG	TT	CC	CG	GT	AG	CT	AC	CC	GT	CT	CC
16._RUQ_1089	TT	AT	GG	CT	CC	CC	GG	AA	CC	AA	GG	GT	CC	CC
17._RUQ_1089	__	__	__	__	__	CC	GG	AA	__	AA	GG	__	__	CC
18._ICS_39_Fld#_30_Plt#_2	AG	AA	GG	AA	GG	CG	AA	__	AG	AC	CG	AC	__	CC
19._RUQ_1089	AA	AT	GG	AG	GG	GG	CC	__	GG	AA	GG	AC	__	CC

	29	30	31	32	33	34	35	36	37	38	39
_Input profile	AG	GG	AT	CT	AG	CG	CT	GT	AC	AT	GG	X_X	X_X	X_X
1._GC-01-085-5-02	AG	GG	AT	CT	AG	CG	CT	GT	AC	AT	GG	X_X	X_X	X_X
2._ICS_39	AG	GG	AT	CT	AG	CG	CT	GT	AC	AT	GG	X_X	X_X	X_X
3._ICS_39	AG	GG	AT	CT	AG	CG	CT	GT	AC	AT	GG	X_X	X_X	X_X
4._ICS_39	AG	GG	AT	CT	AG	CG	CT	GT	AC	AT	GG	X_X	X_X	X_X
5._ICS_39	AG	GG	AT	CT	AG	CG	CT	GT	AC	AT	GG	X_X	X_X	X_X
6._ICS_39	AG	GG	AT	CT	AG	CG	CT	GT	AC	AT	GG	X_X	X_X	X_X
7._ICS_39	AG	GG	AT	CT	AG	CG	CT	GT	AC	AT	GG	X_X	X_X	X_X
8._GC-01-085-5-02	AG	GG	AT	CT	AG	CG	CT	GT	AC	AT	GG	X_X	X_X	X_X
9._GC-01-085-5-02	AG	GG	AT	CT	AG	CG	CT	GT	AC	AT	GG	X_X	X_X	X_X
10._GC-01-85-5-02	AG	GG	AT	CT	AG	CG	CT	GT	AC	AT	GG	X_X	X_X	X_X
11._GC-01-85-5-02	AG	GG	AT	CT	AG	CG	CT	GT	AC	AT	GG	X_X	X_X	X_X
12._GC-01-85-5-02	AG	GG	AT	CT	AG	CG	CT	GT	AC	AT	GG	X_X	X_X	X_X
13._GC-01-85-5-02	AG	GG	AT	CT	AG	CG	CT	GT	AC	AT	GG	X_X	X_X	X_X
14._ICS_39	AG	GG	AT	CT	AG	CG	CT	GT	AC	AT	GG	X_X	X_X	X_X
15._ICS_39	AG	AG	AT	CT	AG	GG	CT	GT	AC	AT	GG	X_X	X_X	X_X
16._RUQ_1089	AA	GG	AT	CT	AG	CC	CT	GG	AC	TT	GG	X_X	X_X	X_X
17._RUQ_1089	__	__	__	__	AG	__	__	__	AC	__	__	X_X	X_X	X_X
18._ICS_39_Fld#_30_Plt#_2	__	GG	AT	AG	AG	CG	AG	AC	AC	AT	GG	X_X	X_X	X_X
19._RUQ_1089	__	GG	AT	AG	AG	GG	AG	CC	AC	TT	GG	X_X	X_X	X_X

Input profile: ICS_39

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Mars Center for Cocoa Science, Brazil

Location: 1502 PL8 FP

Dapeng Zhang, 2016

1._ICS_39 GC-01-085-5-02

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 16

Notes: 16

2._ICS_39

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1502 PL5 FP

Dapeng Zhang, 2016

3._ICS_39

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1502 PL15 F

Dapeng Zhang, 2016

4._ICS_39

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1502 PL14 F

Dapeng Zhang, 2016

5._ICS_39

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1502 16

Dapeng Zhang, 2016

6._ICS_39

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1502 12

Dapeng Zhang, 2016

7._ICS_39

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1502 9

Dapeng Zhang, 2016

8._ICS_39 GC-01-085-5-02

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 12

Notes: 12

9._ICS_39 GC-01-085-5-02

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 9

Notes: 9

10._ICS_39 GC-01-85-5-02

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Field: 1, Block: 5, Rep: 2, Tree: PL15

Notes: PL15 FP4

11._ICS_39 GC-01-85-5-02

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Field: 1, Block: 5, Rep: 2, Tree: PL5

Notes: PL5 FP2

12._ICS_39 GC-01-85-5-02

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Field: 1, Block: 5, Rep: 2, Tree: PL8

Notes: PL8 FP1

13._ICS_39 GC-01-85-5-02

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Field: 1, Block: 5, Rep: 2, Tree: PL14

Notes: PL14 FP3

14._ICS_39

97.4 %
39 shared markers

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Malaysian Cocoa Board (MCB), Malaysia

Location: Row 9 C0200 2A

Dapeng Zhang, 2016

15._ICS_39

94.9 %
39 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 6B E361 T3

Dapeng Zhang, 2016

16._ICS_39 RUQ_1089

65.4 %
39 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

17._ICS_39 RUQ_1089

53.8 %
13 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

Population Assignment:

IMC
0.380 LCT
0.051 Nan
0.464

18._ICS_39 ICS_39_Fld#_30_Plt#_2

52.9 %
34 shared markers

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USDA-TARS, United States of America

Location: Field: 30, Tree: 2

19._ICS_39 RUQ_1089

37.9 %
33 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

Key to SNP Markers

Key to SNP Markers

1	TcSNP1520	2	TcSNP1484	3	TcSNP1458	4	TcSNP1442	5	TcSNP1414
6	TcSNP1350	7	TcSNP1270	8	TcSNP1253	9	TcSNP1165	10	TcSNP1144
11	TcSNP1075	12	TcSNP1062	13	TcSNP1060	14	TcSNP998	15	TcSNP994
16	TcSNP953	17	TcSNP929	18	TcSNP917	19	TcSNP891	20	TcSNP872
21	TcSNP723	22	TcSNP645	23	TcSNP619	24	TcSNP591	25	TcSNP577
26	TcSNP560	27	TcSNP534	28	TcSNP529	29	TcSNP469	30	TcSNP429
31	TcSNP372	32	TcSNP242	33	TcSNP230	34	TcSNP226	35	TcSNP151
36	TcSNP150	37	TcSNP144	38	TcSNP32	39	TcSNP25