SNP Profiles of UF 676   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
CTAGCGCTTTAACCGTCTCTAAAACTAA
1._ICS_39___
CTAGCGCTTTAACCGTCTCTAAAACTAA
2._ICS_39___
CTAGCGCTTTAACCGTCTCTAAAACTAA
3._ICS_39___
CTAGCGCTTTAACCGTCTCTAAAACTAA
4._ICS_39___
CTAGCGCTTTAACCGTCTCTAAAACTAA
5._ICS_39___
CTAGCGCTTTAACCGTCTCTAAAACTAA
6._ICS_39___
CTAGCGCTTTAACCGTCTCTAAAACTAA
7._ICS_39___
CTAGCGCTTTAACCGTCTCTAAAACTAA
8._ICS_39___
CTAGCGCTTTAACCGTCTCTAAAACTAA
9._ICS_39___
CTAGCGCTTTAACCGTCTCTAAAACTAA
10._ICS_39___
CTAGCGCTTTAACCGTCTCTAAAACTAA
11._ICS_39___
CTAGCGCTTTAACCGTCTCTAAAACTAA
12._ICS_39___
CTAGCGCTTTAACCGTCTCTAAAACTAA
13._ICS_39___
CTAGCGCTTTAACCGTCTCTAAAACTAA
14._ICS_39___
CTAGGGCTTTAACCGTCTCTAAAACTAA
15._ICS_39___
CTAGGGCTTTAACCGTCTCTAAAACTAA
16._ICS_39___
CCAGCCTTTTACTTTTCCCCAAAGCTAG
17._ICS_39___
AGAGCCAGAAAAGGAA____AAAAAGAA
18._ICS_39___
____CC________TT__CC__AG__AG
19._ICS_39___
GGAAGGAAAA__AAAA____AAAGAGAG
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
CTAAGGTTCCCGGTGGCTACCCGTCTCC
1._ICS_39___
CTAAGGTTCCCGGTGGCTACCCGTCTCC
2._ICS_39___
CTAAGGTTCCCGGTGGCTACCCGTCTCC
3._ICS_39___
CTAAGGTTCCCGGTGGCTACCCGTCTCC
4._ICS_39___
CTAAGGTTCCCGGTGGCTACCCGTCTCC
5._ICS_39___
CTAAGGTTCCCGGTGGCTACCCGTCTCC
6._ICS_39___
CTAAGGTTCCCGGTGGCTACCCGTCTCC
7._ICS_39___
CTAAGGTTCCCGGTGGCTACCCGTCTCC
8._ICS_39___
CTAAGGTTCCCGGTGGCTACCCGTCTCC
9._ICS_39___
CTAAGGTTCCCGGTGGCTACCCGTCTCC
10._ICS_39___
CTAAGGTTCCCGGTGGCTACCCGTCTCC
11._ICS_39___
CTAAGGTTCCCGGTGGCTACCCGTCTCC
12._ICS_39___
CTAAGGTTCCCGGTGGCTACCCGTCTCC
13._ICS_39___
CTAAGGTTCCCGGTGGCTACCCGTCTCC
14._ICS_39___
CTAAGGTTCCCGGTAGCTACCCGTCTCC
15._ICS_39___
CTAAGGTTCCCGGTAGCTACCCGTCTCC
16._ICS_39___
TTATGGCTCCCCGGAACCAAGGGTCCCC
17._ICS_39___
AGAAGGAAGGCGAA__AGACCGAC__CC
18._ICS_39___
__________CCGGAA__AAGG____CC
19._ICS_39___
AAATGGAGGGGGCC__GGAAGGAC__CC
 29 30 31 32 33 34 35 36 37 38 39 40   
_Input profile
AGGGATCTAGCGACCTGTACATGGX_XX_X
1._ICS_39___
AGGGATCTAGCGACCTGTACATGGX_XX_X
2._ICS_39___
AGGGATCTAGCGACCTGTACATGGX_XX_X
3._ICS_39___
AGGGATCTAGCGACCTGTACATGGX_XX_X
4._ICS_39___
AGGGATCTAGCGACCTGTACATGGX_XX_X
5._ICS_39___
AGGGATCTAGCGACCTGTACATGGX_XX_X
6._ICS_39___
AGGGATCTAGCGACCTGTACATGGX_XX_X
7._ICS_39___
AGGGATCTAGCGACCTGTACATGGX_XX_X
8._ICS_39___
AGGGATCTAGCGACCTGTACATGGX_XX_X
9._ICS_39___
AGGGATCTAGCGACCTGTACATGGX_XX_X
10._ICS_39___
AGGGATCTAGCGACCTGTACATGGX_XX_X
11._ICS_39___
AGGGATCTAGCGACCTGTACATGGX_XX_X
12._ICS_39___
AGGGATCTAGCG__CTGTACATGGX_XX_X
13._ICS_39___
AGGGATCTAGCG__CTGTACATGGX_XX_X
14._ICS_39___
AGGGATCTAGCGACCTGTACATGGX_XX_X
15._ICS_39___
AGAGATCTAGGGACCTGTACATGGX_XX_X
16._ICS_39___
AAGGATCTAGCCACCTGGACTTGGX_XX_X
17._ICS_39___
__GGATAGAGCGACAGACACATGGX_XX_X
18._ICS_39___
________AG________AC____X_XX_X
19._ICS_39___
__GGATAGAGGGACAGCCACTTGGX_XX_X

Input profile: ICS_39

 
Mars Center for Cocoa Science, Brazil
Location: 1502 PL15 F
 Dapeng Zhang, 2016

1._ICS_39 GC-01-085-5-02

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

2._ICS_39

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1502 PL5 FP
 Dapeng Zhang, 2016

3._ICS_39

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1502 PL14 F
 Dapeng Zhang, 2016

4._ICS_39

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1502 16
 Dapeng Zhang, 2016

5._ICS_39

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1502 12
 Dapeng Zhang, 2016

6._ICS_39

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1502 9
 Dapeng Zhang, 2016

7._ICS_39 GC-01-085-5-02

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

8._ICS_39 GC-01-085-5-02

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

9._ICS_39 GC-01-85-5-02

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 5, Rep: 2, Tree: PL15
Notes: PL15 FP4
 Mars, 2018

10._ICS_39 GC-01-85-5-02

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 5, Rep: 2, Tree: PL5
Notes: PL5 FP2
 Mars, 2018

11._ICS_39 GC-01-85-5-02

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 5, Rep: 2, Tree: PL14
Notes: PL14 FP3
 Mars, 2018

12._ICS_39

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1502 PL8 FP
 Dapeng Zhang, 2016

13._ICS_39 GC-01-85-5-02

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 5, Rep: 2, Tree: PL8
Notes: PL8 FP1
 Mars, 2018

14._ICS_39

97.5 %
40 shared markers

Malaysian Cocoa Board (MCB), Malaysia
Location: Row 9 C0200 2A
 Dapeng Zhang, 2016

15._ICS_39

95 %
40 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B E361 T3
 Dapeng Zhang, 2016

16._ICS_39 RUQ_1089

66.3 %
40 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

17._ICS_39 ICS_39_Fld#_30_Plt#_2

54.3 %
35 shared markers

USDA-TARS, United States of America
Location: Field: 30, Tree: 2
 Mars, 2018

18._ICS_39 RUQ_1089

53.8 %
13 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

19._ICS_39 RUQ_1089

39.7 %
34 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP998 15TcSNP994
16TcSNP953 17TcSNP929 18TcSNP917 19TcSNP891 20TcSNP872
21TcSNP723 22TcSNP645 23TcSNP619 24TcSNP591 25TcSNP577
26TcSNP560 27TcSNP534 28TcSNP529 29TcSNP469 30TcSNP429
31TcSNP372 32TcSNP242 33TcSNP230 34TcSNP226 35TcSNP193
36TcSNP151 37TcSNP150 38TcSNP144 39TcSNP32 40TcSNP25