SNP Profiles of ICS 1   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
TTAAGGCTTTAACCTTCTTTAAAATTAG
1._ICS_1___
TTAAGGCTTTAACCTTCTTTAAAATTAG
2._ICS_1___
TTAAGGCTTTAACCTTCTTTAAAATTAG
3._ICS_1___
TTAAGGCTTTAACCTTCTTTAAAATTAG
4._ICS_1___
TTAAGGCTTTAACCTTCTTTAAAATTAG
5._ICS_1___
TTAAGGCTTTAACCTTCTTTAAAATTAG
6._ICS_1___
TTAAGGCTTTAACCTTCTTTAAAATTAG
7._ICS_1___
TTAAGGCTTTAACCTTCTTTAAAATTAG
8._ICS_1___
TTAAGGCTTTAACCTTCTTTAAAATTAG
9._ICS_1___
TTAAGGCTTTAACCTTCTTTAAAATTAG
10._ICS_1___
TTAAGGCTTTAACCTTCTTTAAAATTAG
11._ICS_1___
TTAAGGCTTTAACCTTCTTTAAAATTAG
12._ICS_1___
TTAAGGCTTTAACCTTCTTTAAAATTAG
13._ICS_1___
TTAGGGCTTTAACCTTCTTTAAAATTAG
14._ICS_1___
__AAGGCT______TT________TTAG
15._ICS_1___
____GG________TT__TT__AA__AG
16._ICS_1___
____GG________TT__TT__AA__AG
17._ICS_1___
TTAGGGCTTTAACCTTCTCTAAAATTAG
18._ICS_1___
____CC__________________TT__
19._ICS_1___
CTGGGGCTTTACTTTTCCCCAAGGCCAG
20._ICS_1___
____CG__________________CC__
21._ICS_1___
AAAACCAGAAAAGGAA____AAAAAAAG
22._ICS_1___
AAAACCAGAAAAGGAA____AAAAAAAG
23._ICS_1___
AAAACCAGAAAAGGAA____AAAAAAAG
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
TTAAGGTTCCCGGTGGTTACCCTTTTCC
1._ICS_1___
TTAAGGTTCCCGGTGGTTACCCTTTTCC
2._ICS_1___
TTAAGGTTCCCGGTGGTTACCCTTTTCC
3._ICS_1___
TTAAGGTTCCCGGTGGTTACCCTTTTCC
4._ICS_1___
TTAAGGTTCCCGGTGGTTACCCTTTTCC
5._ICS_1___
TTAAGGTTCCCGGTGGTTACCCTTTTCC
6._ICS_1___
TTAAGGTTCCCGGTGGTTACCCTTTTCC
7._ICS_1___
TTAAGGTTCCCGGTGGTTACCCTTTTCC
8._ICS_1___
TTAAGGTTCCCGGTGGTTACCCTTTTCC
9._ICS_1___
TTAAGGTTCCCGGTGGTTACCCTTTTCC
10._ICS_1___
TTAAGGTTCCCGGTGGTTAC__TTTTCC
11._ICS_1___
TTAAGGTTCCCGGTGGTTAC__TTTTCC
12._ICS_1___
TTAAGGTTCC__GTGGTTACCCTTTTCC
13._ICS_1___
TTAAGGTTCCCGGTGGTTACCCTTTTCC
14._ICS_1___
________CCCGGT__TTAACCTTTTCC
15._ICS_1___
__________CGGTGG__ACCC____AC
16._ICS_1___
__________CGGTGG__ACCC____AC
17._ICS_1___
TTAAGGTTCCCGGTGGCTACCCTTCTCC
18._ICS_1___
TT______CCCG______ACCC______
19._ICS_1___
TTAACGTTCCGGGGAATTCCCGGGCTAA
20._ICS_1___
CT______CTCG______CCCC______
21._ICS_1___
AAAAGGAAGGCGAC__AAACCCAA__CC
22._ICS_1___
AAAAGGAAGGCGAC__AAACCCAA__CC
23._ICS_1___
AAAAGGAAGGCGAC__AAACCCAA__CC
 29 30 31 32 33 34 35 36 37 38 39 40   
_Input profile
AGGGATCTAGCGAACCGTAAATGGX_XX_X
1._ICS_1___
AGGGATCTAGCGAACCGTAAATGGX_XX_X
2._ICS_1___
AGGGATCTAGCGAACCGTAAATGGX_XX_X
3._ICS_1___
AGGGATCTAGCGAACCGTAAATGGX_XX_X
4._ICS_1___
AGGGATCTAGCGAACCGTAAATGGX_XX_X
5._ICS_1___
AGGGATCTAGCGAACCGTAAATGGX_XX_X
6._ICS_1___
AGGGATCTAGCGAACCGTAAATGGX_XX_X
7._ICS_1___
AGGGATCTAGCGAACCGTAAATGGX_XX_X
8._ICS_1___
AGGGATCTAGCGAACCGTAAATGGX_XX_X
9._ICS_1___
AGGGATCTAGCGAACCGTAAATGGX_XX_X
10._ICS_1___
AGGGATCTAGCGAACCGTAAATGGX_XX_X
11._ICS_1___
AGGGATCTAGCGAACCGTAAATGGX_XX_X
12._ICS_1___
__GGATCTAGCGAACCGTAAATGGX_XX_X
13._ICS_1___
AGGGATCTAGCGAACCGTAAATGGX_XX_X
14._ICS_1___
AG__ATCTAGCGAACCGTAA____X_XX_X
15._ICS_1___
________AG________AA____X_XX_X
16._ICS_1___
________AG________AA____X_XX_X
17._ICS_1___
AGGGATCTAGCGAACCGTAAATGGX_XX_X
18._ICS_1___
____AT__AGCGAACC__AA____X_XX_X
19._ICS_1___
AGGGAACCAACCAACCGTACATGGX_XX_X
20._ICS_1___
____TT__AGCGACCT__CC____X_XX_X
21._ICS_1___
__GGATAGAGCGAAGGACAAATGGX_XX_X
22._ICS_1___
__GGATAGAGCGAAGGACAAATGGX_XX_X
23._ICS_1___
__GGATAGAGCGAAGGACAAATGGX_XX_X

Input profile: ICS_1

 
Mars Center for Cocoa Science, Brazil
Location: 8903 8
 Dapeng Zhang, 2016

1._ICS_1 NA

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

2._ICS_1

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8903 6
 Dapeng Zhang, 2016

3._ICS_1

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8903 5
 Dapeng Zhang, 2016

4._ICS_1

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8903 3
 Dapeng Zhang, 2016

5._ICS_1

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8903 1
 Dapeng Zhang, 2016

6._ICS_1 NA

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

7._ICS_1 NA

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

8._ICS_1 NA

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

9._ICS_1 NA

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

10._ICS_1

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8903 7
 Dapeng Zhang, 2016

11._ICS_1 NA

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

12._ICS_1

identical
38 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: San Juan Block4
 Dapeng Zhang, 2016

13._ICS_1 RUQ_847

98.8 %
40 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

14._ICS_1 RUQ_847

97.9 %
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

15._ICS_1 RUQ_847B

96.2 %
13 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

16._ICS_1 RUQ_847

96.2 %
13 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

17._ICS_1 RUQ_847

95 %
40 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

18._ICS_1 RUQ_847

92.3 %
13 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Location: GBR207
 Jocelyn De Wever et al., 2019

19._ICS_1

62.5 %
40 shared markers

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

20._ICS_1 ICS1

57.7 %
13 shared markers

Center for Forestry Research and Technology Transfer, Vietnam
Location: CEFORTT
 Jocelyn De Wever et al., 2019

21._ICS_1 RUQ_847

54.3 %
35 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

22._ICS_1 MITC-000297

54.3 %
35 shared markers

USDA-SHRS, United States of America
 Mars, 2018

23._ICS_1 ICS_1_Fld#_73_Plt#_2

54.3 %
35 shared markers

USDA-TARS, United States of America
Location: Field: 73, Tree: 2
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP998 15TcSNP994
16TcSNP953 17TcSNP929 18TcSNP917 19TcSNP891 20TcSNP872
21TcSNP723 22TcSNP645 23TcSNP619 24TcSNP591 25TcSNP577
26TcSNP560 27TcSNP534 28TcSNP529 29TcSNP469 30TcSNP429
31TcSNP372 32TcSNP242 33TcSNP230 34TcSNP226 35TcSNP193
36TcSNP151 37TcSNP150 38TcSNP144 39TcSNP32 40TcSNP25